Wall clock time and date at job start Mon Mar 30 2020 04:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47630 * 2 1 4 4 C 1.50702 * 109.47211 * 120.00029 * 2 1 3 5 5 H 1.08006 * 120.00084 * 119.99784 * 4 2 1 6 6 C 1.37876 * 120.00035 * 300.00127 * 4 2 1 7 7 N 1.31511 * 119.99698 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00047 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47114 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46768 * 119.99731 * 8 6 4 11 11 H 1.48496 * 109.46934 * 239.99815 * 8 6 4 12 12 N 1.46899 * 109.47212 * 239.99859 * 2 1 3 13 13 C 1.46903 * 111.00484 * 183.95459 * 12 2 1 14 14 C 1.46897 * 111.00111 * 59.99971 * 12 2 1 15 15 C 1.50692 * 109.47438 * 190.00050 * 14 12 2 16 16 C 1.33328 * 122.71397 * 95.00026 * 15 14 12 17 17 S 1.76168 * 108.09917 * 180.02562 * 16 15 14 18 18 C 1.70965 * 90.35695 * 0.02562 * 17 16 15 19 19 N 1.38608 * 124.94871 * 179.97438 * 18 17 16 20 20 C 1.46499 * 119.99898 * 180.02562 * 19 18 17 21 21 C 1.46499 * 120.00041 * 0.02562 * 19 18 17 22 22 N 1.29686 * 110.09826 * 0.24250 * 18 17 16 23 23 H 1.09007 * 109.47390 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47089 * 299.99770 * 1 2 3 25 25 H 1.08998 * 109.47289 * 60.00365 * 1 2 3 26 26 H 0.97003 * 119.99576 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47091 * 296.04806 * 13 12 2 28 28 H 1.09001 * 109.46791 * 56.04148 * 13 12 2 29 29 H 1.08995 * 109.47720 * 176.04564 * 13 12 2 30 30 H 1.09003 * 109.46855 * 70.00310 * 14 12 2 31 31 H 1.09003 * 109.47427 * 310.00455 * 14 12 2 32 32 H 1.08004 * 125.94573 * 359.97438 * 16 15 14 33 33 H 1.09002 * 109.47391 * 59.99423 * 20 19 18 34 34 H 1.09001 * 109.46813 * 299.99479 * 20 19 18 35 35 H 1.09004 * 109.47041 * 179.97438 * 20 19 18 36 36 H 1.08999 * 109.47655 * 270.01055 * 21 19 18 37 37 H 1.09006 * 109.46899 * 30.00955 * 21 19 18 38 38 H 1.08997 * 109.46879 * 150.00132 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.1464 -2.2870 3.6038 10 1 3.1466 -0.1874 4.8165 11 1 1.1660 -1.5867 4.8160 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7946 -1.1871 14 6 1.5486 -0.0265 -2.4210 15 6 1.8579 -0.8912 -3.6158 16 6 0.9737 -1.7414 -4.1382 17 16 1.7327 -2.5470 -5.5087 18 6 3.1712 -1.6610 -5.2465 19 7 4.3230 -1.7731 -6.0094 20 6 5.4973 -0.9589 -5.6868 21 6 4.3660 -2.7059 -7.1383 22 7 3.0294 -0.8729 -4.2264 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7095 1.1617 3.4844 27 1 3.9192 0.2043 -1.2301 28 1 3.8069 -1.2915 -0.2719 29 1 3.8164 -1.3722 -2.0500 30 1 2.0519 0.9345 -2.5280 31 1 0.4722 0.1324 -2.3564 32 1 -0.0324 -1.9078 -3.7824 33 1 5.8294 -1.1854 -4.6736 34 1 5.2373 0.0974 -5.7563 35 1 6.2992 -1.1830 -6.3903 36 1 4.7183 -3.6779 -6.7933 37 1 3.3668 -2.8107 -7.5612 38 1 5.0446 -2.3228 -7.9003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700104932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:43 Heat of formation + Delta-G solvation = 50.826404 kcal Electronic energy + Delta-G solvation = -18638.347675 eV Core-core repulsion = 15835.749043 eV Total energy + Delta-G solvation = -2802.598632 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90359 -38.68090 -37.41641 -34.76418 -31.72549 -30.90953 -29.19699 -28.51843 -27.10583 -26.61000 -25.15323 -22.82837 -21.37099 -20.43973 -18.95767 -18.24307 -17.33439 -17.03540 -16.57337 -15.92476 -15.78597 -15.62097 -15.56752 -14.48042 -14.26920 -14.19436 -13.78586 -13.68221 -13.53358 -13.41292 -12.95371 -12.88154 -12.84008 -12.59330 -12.48241 -12.21208 -12.10456 -11.93825 -11.72538 -10.96019 -10.82943 -10.51092 -10.46377 -10.00467 -8.98044 -8.49824 -8.10590 -6.22369 0.11874 0.28015 0.86118 1.41537 1.42921 1.55178 1.93687 2.00574 2.43795 3.17380 3.43158 3.69020 4.16231 4.21271 4.37986 4.46600 4.48951 4.58580 4.65077 4.70683 4.71677 4.80934 4.86655 4.91863 5.02072 5.03600 5.07491 5.17753 5.22976 5.51075 5.72657 5.77832 5.85996 6.02482 6.25558 6.36491 6.68935 6.90909 7.09460 7.46348 8.95604 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.031499 B = 0.004358 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.714126 B = 6422.705351 C = 6811.801203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.215 3.785 3 H -0.038 1.038 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.277 1.277 12 N -0.533 5.533 13 C 0.058 3.942 14 C 0.126 3.874 15 C 0.111 3.889 16 C -0.293 4.293 17 S 0.131 5.869 18 C 0.296 3.704 19 N -0.594 5.594 20 C 0.109 3.891 21 C 0.088 3.912 22 N -0.572 5.572 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.034 0.966 26 H 0.262 0.738 27 H 0.000 1.000 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.095 0.905 32 H 0.183 0.817 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.173 -6.970 -20.929 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.108 3.892 3 H -0.020 1.020 4 C -0.557 4.557 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.203 1.203 12 N -0.258 5.258 13 C -0.091 4.091 14 C -0.004 4.004 15 C -0.019 4.019 16 C -0.435 4.435 17 S 0.380 5.620 18 C -0.074 4.074 19 N -0.315 5.315 20 C -0.036 4.036 21 C -0.054 4.054 22 N -0.299 5.299 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.018 0.982 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.114 0.886 32 H 0.200 0.800 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.184 -7.792 -21.477 23.428 hybrid contribution 0.380 1.395 1.950 2.427 sum 5.563 -6.397 -19.527 21.288 Atomic orbital electron populations 1.21668 0.96715 0.99544 0.99969 1.19106 0.93098 0.90122 0.86842 1.02038 1.21414 1.31120 1.12225 0.90926 0.92556 1.25694 0.95341 0.95769 1.01801 1.70024 1.37758 1.24109 1.24027 0.85461 0.78172 0.78529 0.79187 1.19425 1.20651 1.20299 1.62103 1.10183 1.52038 1.01467 1.22016 0.87988 0.98242 1.00856 1.20604 1.00860 0.92590 0.86370 1.19612 0.87696 0.98017 0.96579 1.26444 1.06802 1.06558 1.03709 1.83203 1.04693 1.42962 1.31104 1.23902 0.94022 0.95905 0.93591 1.46064 1.09306 1.44853 1.31274 1.21648 0.86239 0.94262 1.01447 1.22082 1.04018 0.92383 0.86872 1.66183 1.24558 1.27921 1.11253 0.94654 0.91913 0.94747 0.92871 0.98173 0.92524 0.92082 0.95883 0.88650 0.80009 0.94056 0.93572 0.86985 0.91446 0.91062 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.76 71.98 0.63 -5.43 16 2 C 0.21 11.54 2.06 44.17 0.09 11.63 16 3 H -0.04 -2.27 8.14 -2.39 -0.02 -2.29 16 4 C -0.52 -29.68 7.88 25.60 0.20 -29.48 16 5 H 0.06 3.24 6.41 -2.91 -0.02 3.23 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 8 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.53 -25.15 4.61 -906.07 -4.18 -29.33 16 13 C 0.06 2.63 9.02 127.69 1.15 3.78 16 14 C 0.13 5.17 5.22 85.56 0.45 5.62 16 15 C 0.11 4.04 5.57 41.40 0.23 4.27 16 16 C -0.29 -9.04 11.08 66.71 0.74 -8.30 16 17 S 0.13 3.16 21.69 -56.49 -1.22 1.93 16 18 C 0.30 8.34 7.75 179.32 1.39 9.73 16 19 N -0.59 -12.42 3.38 -760.99 -2.57 -14.99 16 20 C 0.11 2.02 10.44 127.77 1.33 3.36 16 21 C 0.09 1.01 10.38 127.77 1.33 2.33 16 22 N -0.57 -20.15 8.88 -189.87 -1.69 -21.83 16 23 H 0.03 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 25 H 0.03 1.50 6.20 -2.39 -0.01 1.48 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.06 2.71 6.10 -2.39 -0.01 2.69 16 29 H 0.06 2.63 6.41 -2.39 -0.02 2.61 16 30 H 0.02 0.99 8.12 -2.39 -0.02 0.97 16 31 H 0.10 3.70 5.78 -2.39 -0.01 3.68 16 32 H 0.18 5.06 8.06 -2.91 -0.02 5.03 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 1.14 7.79 -2.38 -0.02 1.12 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.78 7.05 -2.38 -0.02 0.76 16 38 H 0.11 0.62 7.92 -2.39 -0.02 0.60 16 Total: -1.00 -68.32 317.29 1.64 -66.68 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.05 Total: 5.74 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 7.99 Total: -1.34 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -8.20 Total: -119.79 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.22 Total: 1.93 kcal Total: -68.32 1.64 -66.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700104932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.509 kcal (2) G-P(sol) polarization free energy of solvation -68.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds