Wall clock time and date at job start Mon Mar 30 2020 04:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47120 * 2 1 4 4 C 1.46901 * 110.99682 * 288.02358 * 3 2 1 5 5 C 1.50697 * 109.46780 * 160.36261 * 4 3 2 6 6 H 1.08000 * 120.00289 * 4.65593 * 5 4 3 7 7 C 1.37878 * 120.00082 * 184.66069 * 5 4 3 8 8 N 1.31511 * 119.99771 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00162 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46931 * 59.99861 * 9 7 5 11 11 H 1.48496 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46956 * 299.99874 * 9 7 5 13 13 C 1.46902 * 110.99641 * 164.07028 * 3 2 1 14 14 C 1.50695 * 109.47560 * 293.95328 * 13 3 2 15 15 C 1.33322 * 122.71022 * 94.99800 * 14 13 3 16 16 S 1.76170 * 108.09597 * 180.02562 * 15 14 13 17 17 C 1.70962 * 90.35670 * 0.02562 * 16 15 14 18 18 N 1.38612 * 124.95136 * 179.97438 * 17 16 15 19 19 C 1.46503 * 119.99889 * 180.02562 * 18 17 16 20 20 C 1.46492 * 119.99894 * 0.02562 * 18 17 16 21 21 N 1.29691 * 110.10058 * 0.24129 * 17 16 15 22 22 H 1.09009 * 109.46780 * 299.42204 * 1 2 3 23 23 H 1.08997 * 109.47222 * 59.41961 * 1 2 3 24 24 H 1.09000 * 109.46954 * 179.42702 * 1 2 3 25 25 H 1.09001 * 109.47338 * 239.99980 * 2 1 3 26 26 H 1.09002 * 109.47322 * 120.00020 * 2 1 3 27 27 H 1.09003 * 109.47075 * 280.35932 * 4 3 2 28 28 H 1.09000 * 109.47180 * 40.36257 * 4 3 2 29 29 H 0.97004 * 119.99891 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.46703 * 173.95068 * 13 3 2 31 31 H 1.09002 * 109.47202 * 53.95491 * 13 3 2 32 32 H 1.07990 * 125.95437 * 0.02562 * 15 14 13 33 33 H 1.09000 * 109.46935 * 90.00373 * 19 18 17 34 34 H 1.08997 * 109.47267 * 329.99959 * 19 18 17 35 35 H 1.09003 * 109.46536 * 210.00077 * 19 18 17 36 36 H 1.09004 * 109.47217 * 269.99796 * 20 18 17 37 37 H 1.09002 * 109.47620 * 29.99992 * 20 18 17 38 38 H 1.09003 * 109.47471 * 150.00009 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7950 2.0228 -1.3042 5 6 1.8465 3.5206 -1.1463 6 1 2.1020 3.9545 -0.1909 7 6 1.5672 4.3371 -2.2217 8 7 1.2563 3.8087 -3.3852 9 14 1.6302 6.1938 -2.0259 10 1 2.9965 6.6016 -1.6111 11 1 1.2915 6.8396 -3.3194 12 1 0.6520 6.6159 -0.9913 13 6 3.4385 1.4417 0.3764 14 6 3.5957 1.0059 1.8104 15 6 3.8987 -0.2462 2.1538 16 16 3.9854 -0.3258 3.9115 17 6 3.6040 1.3374 4.0163 18 7 3.4839 2.0517 5.1982 19 6 3.1513 3.4780 5.1615 20 6 3.6895 1.3802 6.4839 21 7 3.4379 1.8323 2.8291 22 1 -0.3633 0.5049 0.8952 23 1 -0.3633 0.5228 -0.8847 24 1 -0.3633 -1.0276 -0.0103 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.5690 1.7042 -2.0025 28 1 0.8173 1.7312 -1.6876 29 1 1.0595 4.3832 -4.1416 30 1 3.8035 2.4628 0.2648 31 1 4.0127 0.7780 -0.2700 32 1 4.0624 -1.0684 1.4731 33 1 2.0685 3.5994 5.1912 34 1 3.5414 3.9186 4.2441 35 1 3.5966 3.9770 6.0222 36 1 2.7401 0.9815 6.8415 37 1 4.4018 0.5648 6.3582 38 1 4.0795 2.0948 7.2088 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700105189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:46 Heat of formation + Delta-G solvation = 63.232042 kcal Electronic energy + Delta-G solvation = -18602.982636 eV Core-core repulsion = 15800.921952 eV Total energy + Delta-G solvation = -2802.060684 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.63598 -37.21386 -36.03449 -32.54446 -30.76564 -29.57264 -28.38238 -27.00061 -26.07737 -24.84382 -22.49508 -21.72626 -19.84693 -19.30113 -17.69800 -16.39725 -16.02855 -15.58396 -14.98825 -14.85330 -14.63777 -14.09250 -13.53732 -13.34319 -13.08384 -12.81235 -12.71926 -12.59551 -12.25721 -12.03913 -11.86735 -11.38449 -11.20323 -10.93532 -10.77808 -10.64787 -10.46326 -10.18348 -9.80939 -9.60342 -9.20795 -9.13770 -8.85081 -8.32944 -7.44620 -7.13878 -5.93473 -3.93371 1.27712 1.37458 2.03605 2.90300 3.31370 3.40593 3.43458 3.48041 4.51538 4.61950 4.99792 5.09556 5.13527 5.19593 5.35804 5.42589 5.57394 5.60660 5.78740 5.82855 5.89065 6.00931 6.17552 6.21196 6.28026 6.41327 6.63303 6.69378 6.77139 6.90241 7.08196 7.31453 7.40420 7.93392 8.19787 8.28099 8.35362 8.64767 9.15226 9.70133 11.17190 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.005442 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.872975 B = 5143.824569 C = 6111.033548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 N -0.525 5.525 4 C 0.192 3.808 5 C -0.500 4.500 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.902 5.902 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.132 3.868 14 C 0.146 3.854 15 C -0.305 4.305 16 S 0.055 5.945 17 C 0.316 3.684 18 N -0.594 5.594 19 C 0.105 3.895 20 C 0.097 3.903 21 N -0.520 5.520 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.043 0.957 25 H 0.021 0.979 26 H 0.061 0.939 27 H -0.011 1.011 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.169 0.831 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.479 -7.945 17.584 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.250 5.250 4 C 0.068 3.932 5 C -0.539 4.539 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.001 3.999 14 C 0.015 3.985 15 C -0.446 4.446 16 S 0.303 5.697 17 C -0.055 4.055 18 N -0.315 5.315 19 C -0.040 4.040 20 C -0.047 4.047 21 N -0.244 5.244 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.007 0.993 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.186 0.814 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.216 -7.774 18.564 20.790 hybrid contribution 0.283 0.808 -1.420 1.659 sum 5.498 -6.965 17.143 19.304 Atomic orbital electron populations 1.21716 0.95619 0.99738 1.02779 1.22082 0.96030 0.91027 0.99136 1.62073 1.14340 1.14291 1.34339 1.19797 0.96512 0.94295 0.82612 1.21179 1.45686 0.90651 0.96371 0.91755 1.24970 0.95624 0.98823 0.95221 1.69950 1.48045 1.35216 1.01034 0.86579 0.78516 0.85421 0.76995 1.20325 1.21505 1.20257 1.20549 0.91033 1.02239 0.86099 1.20047 0.94924 0.87844 0.95718 1.26213 1.21206 1.02085 0.95095 1.83501 1.71964 1.08273 1.05935 1.23579 0.98963 0.92778 0.90142 1.45633 1.75594 1.09312 1.01010 1.21653 1.00536 0.78689 1.03136 1.21737 1.01332 0.97895 0.83698 1.66219 1.25177 1.36831 0.96159 0.92646 0.92033 0.93791 0.96125 0.92059 0.99333 0.94355 0.93021 0.88408 0.94425 0.81400 0.92977 0.90012 0.91674 0.92588 0.91501 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.99 37.16 0.37 -2.22 16 2 C 0.05 0.88 5.54 -3.82 -0.02 0.86 16 3 N -0.53 -11.93 4.37 -237.51 -1.04 -12.96 16 4 C 0.19 5.12 4.59 -4.98 -0.02 5.10 16 5 C -0.50 -14.45 8.61 -34.44 -0.30 -14.74 16 6 H 0.06 1.89 7.66 -52.49 -0.40 1.48 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 9 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.13 2.72 5.23 -4.98 -0.03 2.70 16 14 C 0.15 2.71 5.63 -84.19 -0.47 2.23 16 15 C -0.31 -4.73 9.48 29.02 0.27 -4.46 16 16 S 0.05 0.73 21.69 -107.50 -2.33 -1.60 16 17 C 0.32 4.91 7.74 -87.68 -0.68 4.23 16 18 N -0.59 -7.42 3.38 -191.88 -0.65 -8.07 16 19 C 0.10 1.20 10.60 59.85 0.63 1.84 16 20 C 0.10 0.79 10.45 59.84 0.63 1.41 16 21 N -0.52 -9.84 9.81 -11.36 -0.11 -9.95 16 22 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 23 H 0.06 1.24 6.52 -51.93 -0.34 0.91 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 26 H 0.06 1.09 5.70 -51.93 -0.30 0.80 16 27 H -0.01 -0.31 8.00 -51.93 -0.42 -0.73 16 28 H 0.04 1.08 6.24 -51.93 -0.32 0.76 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.10 2.23 7.32 -51.93 -0.38 1.85 16 31 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.13 7.62 -51.93 -0.40 0.74 16 35 H 0.06 0.53 7.89 -51.93 -0.41 0.12 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.51 7.05 -51.93 -0.37 0.15 16 38 H 0.08 0.45 7.89 -51.93 -0.41 0.04 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -32.50 323.65 -9.07 -41.57 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.82 Total: -3.08 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 0.29 Total: -1.58 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -1.06 Total: -57.45 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.33 Total: -1.60 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.50 -9.07 -41.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700105189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.806 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds