Wall clock time and date at job start Mon Mar 30 2020 04:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47120 * 2 1 4 4 C 1.46901 * 110.99682 * 288.02358 * 3 2 1 5 5 C 1.50697 * 109.46780 * 160.36261 * 4 3 2 6 6 H 1.08000 * 120.00289 * 4.65593 * 5 4 3 7 7 C 1.37878 * 120.00082 * 184.66069 * 5 4 3 8 8 N 1.31511 * 119.99771 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00162 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46931 * 59.99861 * 9 7 5 11 11 H 1.48496 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46956 * 299.99874 * 9 7 5 13 13 C 1.46902 * 110.99641 * 164.07028 * 3 2 1 14 14 C 1.50695 * 109.47560 * 293.95328 * 13 3 2 15 15 C 1.33322 * 122.71022 * 94.99800 * 14 13 3 16 16 S 1.76170 * 108.09597 * 180.02562 * 15 14 13 17 17 C 1.70962 * 90.35670 * 0.02562 * 16 15 14 18 18 N 1.38612 * 124.95136 * 179.97438 * 17 16 15 19 19 C 1.46503 * 119.99889 * 180.02562 * 18 17 16 20 20 C 1.46492 * 119.99894 * 0.02562 * 18 17 16 21 21 N 1.29691 * 110.10058 * 0.24129 * 17 16 15 22 22 H 1.09009 * 109.46780 * 299.42204 * 1 2 3 23 23 H 1.08997 * 109.47222 * 59.41961 * 1 2 3 24 24 H 1.09000 * 109.46954 * 179.42702 * 1 2 3 25 25 H 1.09001 * 109.47338 * 239.99980 * 2 1 3 26 26 H 1.09002 * 109.47322 * 120.00020 * 2 1 3 27 27 H 1.09003 * 109.47075 * 280.35932 * 4 3 2 28 28 H 1.09000 * 109.47180 * 40.36257 * 4 3 2 29 29 H 0.97004 * 119.99891 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.46703 * 173.95068 * 13 3 2 31 31 H 1.09002 * 109.47202 * 53.95491 * 13 3 2 32 32 H 1.07990 * 125.95437 * 0.02562 * 15 14 13 33 33 H 1.09000 * 109.46935 * 90.00373 * 19 18 17 34 34 H 1.08997 * 109.47267 * 329.99959 * 19 18 17 35 35 H 1.09003 * 109.46536 * 210.00077 * 19 18 17 36 36 H 1.09004 * 109.47217 * 269.99796 * 20 18 17 37 37 H 1.09002 * 109.47620 * 29.99992 * 20 18 17 38 38 H 1.09003 * 109.47471 * 150.00009 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7950 2.0228 -1.3042 5 6 1.8465 3.5206 -1.1463 6 1 2.1020 3.9545 -0.1909 7 6 1.5672 4.3371 -2.2217 8 7 1.2563 3.8087 -3.3852 9 14 1.6302 6.1938 -2.0259 10 1 2.9965 6.6016 -1.6111 11 1 1.2915 6.8396 -3.3194 12 1 0.6520 6.6159 -0.9913 13 6 3.4385 1.4417 0.3764 14 6 3.5957 1.0059 1.8104 15 6 3.8987 -0.2462 2.1538 16 16 3.9854 -0.3258 3.9115 17 6 3.6040 1.3374 4.0163 18 7 3.4839 2.0517 5.1982 19 6 3.1513 3.4780 5.1615 20 6 3.6895 1.3802 6.4839 21 7 3.4379 1.8323 2.8291 22 1 -0.3633 0.5049 0.8952 23 1 -0.3633 0.5228 -0.8847 24 1 -0.3633 -1.0276 -0.0103 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.5690 1.7042 -2.0025 28 1 0.8173 1.7312 -1.6876 29 1 1.0595 4.3832 -4.1416 30 1 3.8035 2.4628 0.2648 31 1 4.0127 0.7780 -0.2700 32 1 4.0624 -1.0684 1.4731 33 1 2.0685 3.5994 5.1912 34 1 3.5414 3.9186 4.2441 35 1 3.5966 3.9770 6.0222 36 1 2.7401 0.9815 6.8415 37 1 4.4018 0.5648 6.3582 38 1 4.0795 2.0948 7.2088 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700105189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:45 Heat of formation + Delta-G solvation = 41.600324 kcal Electronic energy + Delta-G solvation = -18603.920657 eV Core-core repulsion = 15800.921952 eV Total energy + Delta-G solvation = -2802.998705 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89843 -38.62564 -37.32127 -34.73591 -32.20144 -31.15769 -29.20644 -28.85685 -27.18367 -26.42417 -24.43258 -22.89087 -21.53801 -20.52475 -18.88259 -18.51785 -17.22637 -16.90835 -16.55370 -16.19942 -15.88074 -15.78149 -15.26711 -14.73743 -14.31531 -14.26429 -13.83394 -13.71611 -13.48095 -13.34176 -13.27262 -12.92009 -12.87724 -12.66640 -12.56006 -12.40474 -12.11706 -12.00035 -11.48359 -11.30474 -10.87747 -10.57556 -10.40132 -9.98945 -8.98212 -8.48672 -8.17378 -6.26163 0.09266 0.27445 0.85109 1.39191 1.42723 1.50867 1.96203 2.03306 2.42030 3.13421 3.44442 3.55546 4.13335 4.22396 4.28843 4.39629 4.44328 4.49540 4.54661 4.66811 4.69683 4.72503 4.79516 4.80972 4.93822 4.96773 5.03494 5.16690 5.26398 5.28176 5.36266 5.69295 5.87756 6.01787 6.11529 6.39113 6.66638 6.88274 7.16569 7.42293 8.92675 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.005442 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.872975 B = 5143.824569 C = 6111.033548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.046 3.954 3 N -0.537 5.537 4 C 0.209 3.791 5 C -0.518 4.518 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.272 1.272 13 C 0.138 3.862 14 C 0.121 3.879 15 C -0.307 4.307 16 S 0.137 5.863 17 C 0.296 3.704 18 N -0.595 5.595 19 C 0.104 3.896 20 C 0.088 3.912 21 N -0.571 5.571 22 H 0.047 0.953 23 H 0.034 0.966 24 H 0.081 0.919 25 H 0.024 0.976 26 H 0.083 0.917 27 H -0.036 1.036 28 H 0.017 0.983 29 H 0.264 0.736 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.187 0.813 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.930 -8.777 20.166 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.082 4.082 3 N -0.262 5.262 4 C 0.084 3.916 5 C -0.556 4.556 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.204 1.204 12 H -0.197 1.197 13 C 0.007 3.993 14 C -0.011 4.011 15 C -0.449 4.449 16 S 0.386 5.614 17 C -0.074 4.074 18 N -0.315 5.315 19 C -0.041 4.041 20 C -0.053 4.053 21 N -0.297 5.297 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.099 0.901 25 H 0.042 0.958 26 H 0.101 0.899 27 H -0.018 1.018 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.204 0.796 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.673 -8.622 21.203 23.581 hybrid contribution 0.175 0.991 -2.092 2.322 sum 5.848 -7.631 19.110 21.392 Atomic orbital electron populations 1.21676 0.94931 1.01607 1.01019 1.22173 0.96577 0.89226 1.00201 1.61983 1.16115 1.16469 1.31659 1.19418 0.94371 0.93707 0.84147 1.21396 1.46038 0.92136 0.96057 0.92980 1.25818 0.94945 1.03793 0.94750 1.70062 1.48526 1.37039 1.01745 0.85517 0.78798 0.79403 0.77364 1.19575 1.20375 1.19724 1.20345 0.89721 1.00566 0.88637 1.19619 0.97854 0.89195 0.94402 1.26483 1.19219 1.01387 0.97794 1.83118 1.70417 1.05194 1.02668 1.23972 0.98578 0.94621 0.90219 1.46069 1.74394 1.09647 1.01410 1.21677 1.00343 0.78776 1.03291 1.22062 1.02308 0.98769 0.82161 1.66132 1.27550 1.38540 0.97471 0.93406 0.94681 0.90064 0.95803 0.89913 1.01807 0.96505 0.92693 0.91906 0.93512 0.79571 0.93538 0.93114 0.87815 0.91445 0.90854 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 9.99 71.98 0.72 -4.21 16 2 C 0.05 1.78 5.54 86.30 0.48 2.26 16 3 N -0.54 -25.29 4.37 -905.34 -3.96 -29.24 16 4 C 0.21 11.72 4.59 85.56 0.39 12.11 16 5 C -0.52 -31.19 8.61 25.60 0.22 -30.97 16 6 H 0.05 3.20 7.66 -2.91 -0.02 3.18 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 9 Si 0.96 46.55 29.54 68.60 2.03 48.58 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 13 C 0.14 5.94 5.23 85.56 0.45 6.39 16 14 C 0.12 4.49 5.63 41.40 0.23 4.73 16 15 C -0.31 -9.01 9.48 66.71 0.63 -8.38 16 16 S 0.14 3.23 21.69 -56.49 -1.23 2.00 16 17 C 0.30 8.82 7.74 179.32 1.39 10.21 16 18 N -0.59 -13.67 3.38 -760.99 -2.57 -16.24 16 19 C 0.10 2.28 10.60 127.77 1.35 3.64 16 20 C 0.09 1.12 10.45 127.77 1.34 2.46 16 21 N -0.57 -21.84 9.81 -189.87 -1.86 -23.70 16 22 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 23 H 0.03 1.44 6.52 -2.39 -0.02 1.43 16 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.02 0.90 8.05 -2.39 -0.02 0.89 16 26 H 0.08 2.84 5.70 -2.39 -0.01 2.82 16 27 H -0.04 -2.12 8.00 -2.39 -0.02 -2.14 16 28 H 0.02 1.01 6.24 -2.39 -0.01 0.99 16 29 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.06 3.08 7.32 -2.38 -0.02 3.06 16 31 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 32 H 0.19 4.59 8.06 -2.92 -0.02 4.57 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.44 7.62 -2.39 -0.02 1.42 16 35 H 0.10 1.43 7.89 -2.39 -0.02 1.41 16 36 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.07 0.85 7.05 -2.39 -0.02 0.83 16 38 H 0.11 0.77 7.89 -2.39 -0.02 0.75 16 Total: -1.00 -73.19 323.65 1.39 -71.80 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.04 Total: 5.19 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 7.66 Total: -1.02 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -8.11 Total: -126.55 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.23 Total: 2.00 kcal Total: -73.19 1.39 -71.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700105189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.396 kcal (2) G-P(sol) polarization free energy of solvation -73.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds