Wall clock time and date at job start Mon Mar 30 2020 05:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00118 * 2 1 4 4 C 1.50700 * 110.28768 * 57.72524 * 3 2 1 5 5 O 1.20827 * 119.99855 * 212.51461 * 4 3 2 6 6 O 1.34229 * 120.00080 * 32.23258 * 4 3 2 7 7 C 1.54256 * 110.32500 * 295.59314 * 3 2 1 8 8 C 1.54380 * 105.06548 * 241.00182 * 7 3 2 9 9 N 1.48561 * 104.59035 * 23.85126 * 8 7 3 10 10 C 1.46903 * 111.00156 * 200.95793 * 9 8 7 11 11 C 1.53006 * 109.46939 * 86.16729 * 10 9 8 12 12 C 1.50701 * 115.55079 * 283.19405 * 11 10 9 13 13 H 1.07999 * 120.00055 * 146.23159 * 12 11 10 14 14 C 1.37877 * 119.99655 * 326.23340 * 12 11 10 15 15 N 1.31507 * 120.00358 * 337.80254 * 14 12 11 16 16 Si 1.86802 * 119.99865 * 157.80877 * 14 12 11 17 17 H 1.48498 * 109.47535 * 65.00051 * 16 14 12 18 18 H 1.48497 * 109.47142 * 185.00624 * 16 14 12 19 19 H 1.48503 * 109.46892 * 305.00583 * 16 14 12 20 20 C 1.52993 * 117.49697 * 137.48695 * 11 10 9 21 21 C 1.52994 * 117.49883 * 68.86191 * 11 10 9 22 22 C 1.48717 * 104.29327 * 320.57602 * 9 8 7 23 23 H 1.09003 * 109.47118 * 175.85238 * 1 2 3 24 24 H 1.08989 * 109.46938 * 295.85791 * 1 2 3 25 25 H 1.09010 * 109.46781 * 55.85969 * 1 2 3 26 26 H 0.96705 * 117.00003 * 175.23379 * 6 4 3 27 27 H 1.09004 * 110.32758 * 359.90137 * 7 3 2 28 28 H 1.09004 * 110.32596 * 122.10740 * 7 3 2 29 29 H 1.08995 * 110.41407 * 142.63063 * 8 7 3 30 30 H 1.09001 * 110.41241 * 264.95887 * 8 7 3 31 31 H 1.08995 * 109.47286 * 206.16470 * 10 9 8 32 32 H 1.08999 * 109.47284 * 326.17311 * 10 9 8 33 33 H 0.97000 * 120.00522 * 185.03384 * 15 14 12 34 34 H 1.08996 * 117.50477 * 359.97438 * 20 11 10 35 35 H 1.09003 * 117.49907 * 145.02651 * 20 11 10 36 36 H 1.09000 * 117.50470 * 214.98062 * 21 11 10 37 37 H 1.09010 * 117.50077 * 359.97438 * 21 11 10 38 38 H 1.09003 * 110.38816 * 280.64492 * 22 9 8 39 39 H 1.08996 * 110.51153 * 158.14744 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5333 2.0897 1.1951 5 8 1.3935 3.2872 1.1152 6 8 1.2582 1.4573 2.3467 7 6 1.6573 2.0490 -1.3046 8 6 3.0145 2.3391 -1.9808 9 7 3.9347 1.3116 -1.4291 10 6 5.3359 1.7297 -1.5699 11 6 5.7329 2.5944 -0.3716 12 6 5.2271 4.0137 -0.3983 13 1 4.9634 4.5105 0.5237 14 6 5.1009 4.6781 -1.5999 15 7 5.7972 4.2860 -2.6443 16 14 3.9410 6.1352 -1.7442 17 1 4.4254 7.2411 -0.8797 18 1 3.8956 6.5939 -3.1558 19 1 2.5797 5.7289 -1.3117 20 6 7.1060 2.3450 0.2555 21 6 5.8379 1.9074 0.9914 22 6 3.5509 1.2063 0.0038 23 1 -0.3633 -1.0250 -0.0743 24 1 -0.3633 0.4482 0.9247 25 1 -0.3633 0.5768 -0.8507 26 1 1.0238 2.0092 3.1055 27 1 1.0422 1.4177 -1.9458 28 1 1.1391 2.9814 -1.0806 29 1 2.9307 2.2331 -3.0623 30 1 3.3612 3.3400 -1.7234 31 1 5.9759 0.8483 -1.6097 32 1 5.4529 2.3055 -2.4880 33 1 5.7645 4.7965 -3.4685 34 1 7.7264 1.5646 -0.1852 35 1 7.6438 3.2076 0.6489 36 1 5.5415 2.4821 1.8689 37 1 5.6238 0.8395 1.0346 38 1 3.9832 2.0285 0.5741 39 1 3.8693 0.2485 0.4151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703775872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:29 Heat of formation + Delta-G solvation = -75.034578 kcal Electronic energy + Delta-G solvation = -22924.893090 eV Core-core repulsion = 19641.791094 eV Total energy + Delta-G solvation = -3283.101996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.72186 -38.74423 -37.36801 -36.04736 -34.87125 -32.46865 -30.49373 -28.79513 -26.24932 -25.90086 -25.23486 -23.13204 -21.58932 -20.49308 -19.53613 -19.05382 -18.26336 -17.12465 -16.30617 -15.94476 -15.07909 -14.83168 -14.75369 -14.34830 -14.27688 -13.94598 -13.37903 -13.28240 -12.69377 -12.31867 -12.27256 -11.76330 -11.49782 -11.28927 -11.13963 -11.06889 -11.01048 -10.79970 -10.59384 -10.41839 -10.33315 -10.15573 -9.99335 -9.62097 -9.51936 -9.17144 -8.72078 -8.05816 -7.33974 -6.20985 -4.15630 2.32529 3.11281 3.21590 3.28317 3.38177 3.83611 4.27569 4.76141 4.87074 4.97208 5.07462 5.32630 5.39434 5.47074 5.51759 5.71798 5.79732 5.94759 6.03578 6.17312 6.19233 6.31888 6.40581 6.51082 6.57179 6.61949 6.66704 6.75009 6.95770 7.00435 7.15338 7.22507 7.31371 7.40203 7.72439 7.92190 8.01774 8.07766 8.34511 8.76307 9.37232 10.79615 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.009020 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.323391 B = 3103.606673 C = 3520.965411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.350 6.350 3 C 0.127 3.873 4 C 0.461 3.539 5 O -0.497 6.497 6 O -0.509 6.509 7 C -0.142 4.142 8 C 0.025 3.975 9 N -0.495 5.495 10 C 0.061 3.939 11 C 0.026 3.974 12 C -0.497 4.497 13 H 0.060 0.940 14 C 0.081 3.919 15 N -0.863 5.863 16 Si 0.868 3.132 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.264 1.264 20 C -0.198 4.198 21 C -0.218 4.218 22 C 0.036 3.964 23 H 0.089 0.911 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.401 0.599 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.125 0.875 33 H 0.266 0.734 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 -6.104 4.026 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.268 6.268 3 C 0.085 3.915 4 C 0.302 3.698 5 O -0.383 6.383 6 O -0.321 6.321 7 C -0.180 4.180 8 C -0.102 4.102 9 N -0.217 5.217 10 C -0.066 4.066 11 C 0.024 3.976 12 C -0.534 4.534 13 H 0.078 0.922 14 C -0.123 4.123 15 N -0.499 5.499 16 Si 0.695 3.305 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.237 4.237 21 C -0.255 4.255 22 C -0.091 4.091 23 H 0.107 0.893 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.259 0.741 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.142 0.858 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.586 -6.696 3.111 11.324 hybrid contribution -0.783 2.187 1.025 2.539 sum -9.369 -4.509 4.136 11.190 Atomic orbital electron populations 1.22878 0.81794 1.02924 1.00115 1.88093 1.19157 1.25302 1.94280 1.22436 0.97512 0.82584 0.88968 1.24419 0.73341 0.87462 0.84623 1.90743 1.47366 1.16168 1.84002 1.84672 1.80819 1.45239 1.21332 1.22981 1.00323 1.00456 0.94214 1.23323 0.89797 0.98406 0.98716 1.65808 1.04613 1.41045 1.10283 1.22173 0.86175 0.95982 1.02281 1.19569 0.94427 0.94807 0.88768 1.20435 1.43818 0.96282 0.92833 0.92175 1.24846 0.94836 0.96907 0.95708 1.69854 1.37031 1.39140 1.03855 0.87036 0.83164 0.82946 0.77400 1.20153 1.20840 1.18873 1.23011 0.92168 1.01385 1.07133 1.23113 1.05249 0.98881 0.98288 1.23845 0.86447 1.04211 0.94613 0.89267 0.93910 0.93781 0.74105 0.90071 0.89879 0.91096 0.89056 0.93672 0.85750 0.92352 0.91595 0.90605 0.90802 0.90727 0.87018 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.30 101.05 1.04 1.29 16 2 O -0.35 -5.86 10.15 -48.98 -0.50 -6.35 16 3 C 0.13 2.31 1.07 -90.39 -0.10 2.21 16 4 C 0.46 8.16 6.07 36.01 0.22 8.38 16 5 O -0.50 -10.18 16.38 -18.75 -0.31 -10.48 16 6 O -0.51 -7.11 12.17 -44.39 -0.54 -7.65 16 7 C -0.14 -2.60 5.68 -25.35 -0.14 -2.75 16 8 C 0.03 0.53 6.22 -2.18 -0.01 0.52 16 9 N -0.49 -10.51 5.65 -229.83 -1.30 -11.81 16 10 C 0.06 1.41 5.56 -3.82 -0.02 1.39 16 11 C 0.03 0.61 1.04 -155.66 -0.16 0.45 16 12 C -0.50 -12.99 7.54 -34.44 -0.26 -13.25 16 13 H 0.06 1.64 7.91 -52.49 -0.42 1.22 16 14 C 0.08 2.10 3.38 -17.82 -0.06 2.04 16 15 N -0.86 -22.64 11.02 55.43 0.61 -22.02 16 16 Si 0.87 20.44 28.52 -169.99 -4.85 15.59 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 20 C -0.20 -4.44 9.88 -26.73 -0.26 -4.70 16 21 C -0.22 -4.61 6.94 -26.73 -0.19 -4.79 16 22 C 0.04 0.73 4.08 -2.09 -0.01 0.72 16 23 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.04 0.53 6.58 -51.93 -0.34 0.18 16 25 H 0.04 0.53 6.59 -51.92 -0.34 0.19 16 26 H 0.40 3.69 9.11 45.56 0.41 4.10 16 27 H 0.08 1.30 6.81 -51.93 -0.35 0.95 16 28 H 0.08 1.57 6.78 -51.93 -0.35 1.22 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.09 2.17 3.25 -51.93 -0.17 2.00 16 31 H 0.04 1.00 7.98 -51.93 -0.41 0.58 16 32 H 0.12 3.13 5.07 -51.93 -0.26 2.87 16 33 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 34 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 35 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.07 1.46 6.60 -51.92 -0.34 1.12 16 38 H 0.11 2.45 3.56 -51.93 -0.18 2.27 16 39 H 0.09 1.68 7.22 -51.93 -0.37 1.31 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -28.89 299.43 -6.71 -35.60 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.39 Total: 11.10 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 0.04 Total: -8.49 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: -0.69 Total: -33.83 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -1.34 Total: -24.49 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.85 Total: 15.59 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.89 -6.71 -35.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703775872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.432 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds