Wall clock time and date at job start Mon Mar 30 2020 05:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00118 * 2 1 4 4 C 1.50700 * 110.28768 * 57.72524 * 3 2 1 5 5 O 1.20827 * 119.99855 * 212.51461 * 4 3 2 6 6 O 1.34229 * 120.00080 * 32.23258 * 4 3 2 7 7 C 1.54256 * 110.32500 * 295.59314 * 3 2 1 8 8 C 1.54380 * 105.06548 * 241.00182 * 7 3 2 9 9 N 1.48561 * 104.59035 * 23.85126 * 8 7 3 10 10 C 1.46903 * 111.00156 * 200.95793 * 9 8 7 11 11 C 1.53006 * 109.46939 * 86.16729 * 10 9 8 12 12 C 1.50701 * 115.55079 * 283.19405 * 11 10 9 13 13 H 1.07999 * 120.00055 * 146.23159 * 12 11 10 14 14 C 1.37877 * 119.99655 * 326.23340 * 12 11 10 15 15 N 1.31507 * 120.00358 * 337.80254 * 14 12 11 16 16 Si 1.86802 * 119.99865 * 157.80877 * 14 12 11 17 17 H 1.48498 * 109.47535 * 65.00051 * 16 14 12 18 18 H 1.48497 * 109.47142 * 185.00624 * 16 14 12 19 19 H 1.48503 * 109.46892 * 305.00583 * 16 14 12 20 20 C 1.52993 * 117.49697 * 137.48695 * 11 10 9 21 21 C 1.52994 * 117.49883 * 68.86191 * 11 10 9 22 22 C 1.48717 * 104.29327 * 320.57602 * 9 8 7 23 23 H 1.09003 * 109.47118 * 175.85238 * 1 2 3 24 24 H 1.08989 * 109.46938 * 295.85791 * 1 2 3 25 25 H 1.09010 * 109.46781 * 55.85969 * 1 2 3 26 26 H 0.96705 * 117.00003 * 175.23379 * 6 4 3 27 27 H 1.09004 * 110.32758 * 359.90137 * 7 3 2 28 28 H 1.09004 * 110.32596 * 122.10740 * 7 3 2 29 29 H 1.08995 * 110.41407 * 142.63063 * 8 7 3 30 30 H 1.09001 * 110.41241 * 264.95887 * 8 7 3 31 31 H 1.08995 * 109.47286 * 206.16470 * 10 9 8 32 32 H 1.08999 * 109.47284 * 326.17311 * 10 9 8 33 33 H 0.97000 * 120.00522 * 185.03384 * 15 14 12 34 34 H 1.08996 * 117.50477 * 359.97438 * 20 11 10 35 35 H 1.09003 * 117.49907 * 145.02651 * 20 11 10 36 36 H 1.09000 * 117.50470 * 214.98062 * 21 11 10 37 37 H 1.09010 * 117.50077 * 359.97438 * 21 11 10 38 38 H 1.09003 * 110.38816 * 280.64492 * 22 9 8 39 39 H 1.08996 * 110.51153 * 158.14744 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5333 2.0897 1.1951 5 8 1.3935 3.2872 1.1152 6 8 1.2582 1.4573 2.3467 7 6 1.6573 2.0490 -1.3046 8 6 3.0145 2.3391 -1.9808 9 7 3.9347 1.3116 -1.4291 10 6 5.3359 1.7297 -1.5699 11 6 5.7329 2.5944 -0.3716 12 6 5.2271 4.0137 -0.3983 13 1 4.9634 4.5105 0.5237 14 6 5.1009 4.6781 -1.5999 15 7 5.7972 4.2860 -2.6443 16 14 3.9410 6.1352 -1.7442 17 1 4.4254 7.2411 -0.8797 18 1 3.8956 6.5939 -3.1558 19 1 2.5797 5.7289 -1.3117 20 6 7.1060 2.3450 0.2555 21 6 5.8379 1.9074 0.9914 22 6 3.5509 1.2063 0.0038 23 1 -0.3633 -1.0250 -0.0743 24 1 -0.3633 0.4482 0.9247 25 1 -0.3633 0.5768 -0.8507 26 1 1.0238 2.0092 3.1055 27 1 1.0422 1.4177 -1.9458 28 1 1.1391 2.9814 -1.0806 29 1 2.9307 2.2331 -3.0623 30 1 3.3612 3.3400 -1.7234 31 1 5.9759 0.8483 -1.6097 32 1 5.4529 2.3055 -2.4880 33 1 5.7645 4.7965 -3.4685 34 1 7.7264 1.5646 -0.1852 35 1 7.6438 3.2076 0.6489 36 1 5.5415 2.4821 1.8689 37 1 5.6238 0.8395 1.0346 38 1 3.9832 2.0285 0.5741 39 1 3.8693 0.2485 0.4151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703775872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:28 Heat of formation + Delta-G solvation = -96.001921 kcal Electronic energy + Delta-G solvation = -22925.802302 eV Core-core repulsion = 19641.791094 eV Total energy + Delta-G solvation = -3284.011208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.12723 -40.30047 -38.78739 -37.37090 -36.43018 -34.42988 -32.04035 -30.28027 -27.82572 -27.32996 -26.94697 -24.60961 -23.28346 -22.14257 -20.97032 -20.85937 -19.56943 -18.44943 -18.19280 -17.35366 -16.73323 -16.48372 -16.16508 -15.85844 -15.66312 -15.49036 -15.00248 -14.80024 -14.31115 -13.91033 -13.68455 -13.52558 -13.05350 -12.92238 -12.73715 -12.57878 -12.42985 -12.40708 -12.31478 -12.17963 -11.99678 -11.77923 -11.58782 -11.45847 -11.03087 -10.76349 -10.56292 -9.91746 -9.06359 -8.18484 -6.16487 0.94969 1.30598 1.36768 1.46702 1.85813 2.33790 2.57443 2.86191 3.34428 3.45455 3.51720 3.71449 4.12741 4.25880 4.30670 4.39499 4.46578 4.51525 4.55752 4.63556 4.69786 4.71895 4.81316 4.87059 4.88969 4.99509 5.07551 5.20623 5.28692 5.40492 5.42607 5.51248 5.55083 5.86227 5.99947 6.13301 6.25379 6.42342 6.76614 6.87284 7.37472 8.81345 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.009020 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.323391 B = 3103.606673 C = 3520.965411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.359 6.359 3 C 0.130 3.870 4 C 0.469 3.531 5 O -0.531 6.531 6 O -0.497 6.497 7 C -0.136 4.136 8 C 0.020 3.980 9 N -0.491 5.491 10 C 0.069 3.931 11 C 0.004 3.996 12 C -0.510 4.510 13 H 0.039 0.961 14 C 0.060 3.940 15 N -0.878 5.878 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.273 1.273 19 H -0.271 1.271 20 C -0.202 4.202 21 C -0.191 4.191 22 C 0.037 3.963 23 H 0.117 0.883 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.424 0.576 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.268 0.732 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 -7.492 4.549 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.278 6.278 3 C 0.087 3.913 4 C 0.310 3.690 5 O -0.421 6.421 6 O -0.310 6.310 7 C -0.174 4.174 8 C -0.108 4.108 9 N -0.214 5.214 10 C -0.059 4.059 11 C 0.002 3.998 12 C -0.547 4.547 13 H 0.057 0.943 14 C -0.143 4.143 15 N -0.515 5.515 16 Si 0.733 3.267 17 H -0.206 1.206 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.240 4.240 21 C -0.228 4.228 22 C -0.090 4.090 23 H 0.135 0.865 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.286 0.714 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.791 -8.096 3.662 13.222 hybrid contribution -0.457 2.566 0.936 2.770 sum -10.248 -5.530 4.598 12.520 Atomic orbital electron populations 1.23166 0.79634 1.05006 1.00703 1.88072 1.21412 1.23947 1.94344 1.22169 0.96418 0.83466 0.89203 1.24261 0.72611 0.86724 0.85358 1.90739 1.49081 1.17558 1.84684 1.84603 1.79989 1.45176 1.21210 1.22919 0.98974 1.00698 0.94773 1.23291 0.91220 0.96965 0.99306 1.65813 1.03730 1.40600 1.11209 1.21979 0.87423 0.95616 1.00916 1.19577 0.95473 0.94163 0.90555 1.20485 1.44397 0.97656 0.92163 0.94267 1.25165 0.95316 0.98323 0.95532 1.69914 1.37678 1.39831 1.04050 0.86439 0.81564 0.81077 0.77611 1.20583 1.19802 1.19658 1.23027 0.92215 1.01511 1.07295 1.23052 1.03336 0.99673 0.96760 1.23721 0.88093 1.03753 0.93482 0.86488 0.93454 0.93057 0.71439 0.87605 0.90738 0.90655 0.91829 0.93042 0.88039 0.92249 0.90208 0.91750 0.91000 0.88721 0.89031 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.30 113.37 1.17 1.40 16 2 O -0.36 -10.96 10.15 -135.84 -1.38 -12.34 16 3 C 0.13 4.48 1.07 -10.64 -0.01 4.46 16 4 C 0.47 15.78 6.07 71.24 0.43 16.22 16 5 O -0.53 -21.40 16.38 21.96 0.36 -21.04 16 6 O -0.50 -12.52 12.17 -46.49 -0.57 -13.08 16 7 C -0.14 -4.79 5.68 31.49 0.18 -4.62 16 8 C 0.02 0.84 6.22 86.45 0.54 1.38 16 9 N -0.49 -20.39 5.65 -881.04 -4.97 -25.36 16 10 C 0.07 3.12 5.56 86.30 0.48 3.60 16 11 C 0.00 0.18 1.04 -52.93 -0.06 0.13 16 12 C -0.51 -27.04 7.54 25.60 0.19 -26.85 16 13 H 0.04 2.19 7.91 -2.91 -0.02 2.17 16 14 C 0.06 3.11 3.38 84.66 0.29 3.40 16 15 N -0.88 -46.50 11.02 21.45 0.24 -46.26 16 16 Si 0.91 42.42 28.52 68.60 1.96 44.38 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 20 C -0.20 -8.89 9.88 30.59 0.30 -8.59 16 21 C -0.19 -7.84 6.94 30.59 0.21 -7.63 16 22 C 0.04 1.44 4.08 86.42 0.35 1.79 16 23 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.05 1.01 6.58 -2.39 -0.02 1.00 16 25 H 0.05 1.07 6.59 -2.38 -0.02 1.06 16 26 H 0.42 6.60 9.11 -74.05 -0.67 5.92 16 27 H 0.11 3.15 6.81 -2.39 -0.02 3.13 16 28 H 0.07 2.77 6.78 -2.38 -0.02 2.75 16 29 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.06 3.04 3.25 -2.39 -0.01 3.03 16 31 H 0.05 2.23 7.98 -2.39 -0.02 2.21 16 32 H 0.10 5.15 5.07 -2.39 -0.01 5.13 16 33 H 0.27 13.56 8.32 -92.71 -0.77 12.79 16 34 H 0.08 3.25 8.11 -2.39 -0.02 3.23 16 35 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.09 3.49 6.60 -2.38 -0.02 3.47 16 38 H 0.09 3.95 3.56 -2.39 -0.01 3.94 16 39 H 0.10 3.50 7.22 -2.39 -0.02 3.48 16 Total: -1.00 -61.26 299.43 0.12 -61.14 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.41 Total: 27.87 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.08 Total: -15.31 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -4.74 Total: -71.62 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.59 Total: -46.46 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.96 Total: 44.38 kcal Total: -61.26 0.12 -61.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703775872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.859 kcal (2) G-P(sol) polarization free energy of solvation -61.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds