Wall clock time and date at job start Mon Mar 30 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46870 * 2 1 4 4 C 1.50693 * 109.47182 * 240.00658 * 2 1 3 5 5 O 1.21281 * 120.00095 * 239.99756 * 4 2 1 6 6 N 1.34780 * 120.00182 * 59.99417 * 4 2 1 7 7 C 1.46500 * 119.99910 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.47129 * 324.99754 * 7 6 4 9 9 C 1.52997 * 109.47473 * 85.00011 * 7 6 4 10 10 C 1.50708 * 109.47008 * 205.00179 * 7 6 4 11 11 H 1.08000 * 119.99723 * 359.97438 * 10 7 6 12 12 C 1.37873 * 119.99930 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99779 * 179.97438 * 12 10 7 14 14 Si 1.86795 * 120.00284 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47308 * 89.99617 * 14 12 10 16 16 H 1.48501 * 109.47369 * 209.99691 * 14 12 10 17 17 H 1.48502 * 109.47235 * 329.99860 * 14 12 10 18 18 N 1.46499 * 109.47347 * 120.00285 * 2 1 3 19 19 C 1.46012 * 118.53390 * 239.99966 * 18 2 1 20 20 C 1.52980 * 110.04115 * 161.81592 * 19 18 2 21 21 N 1.47190 * 108.73106 * 50.29165 * 20 19 18 22 22 C 1.46905 * 110.17512 * 291.00464 * 21 20 19 23 23 C 1.33709 * 118.53759 * 59.72991 * 18 2 1 24 24 O 1.21288 * 118.62150 * 1.71548 * 23 18 2 25 25 H 1.08997 * 109.47722 * 59.99451 * 1 2 3 26 26 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99650 * 1 2 3 28 28 H 0.96994 * 120.00115 * 0.02562 * 6 4 2 29 29 H 1.09002 * 109.47153 * 59.99757 * 9 7 6 30 30 H 1.09001 * 109.46832 * 299.99948 * 9 7 6 31 31 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 32 32 H 0.96999 * 119.99874 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.37654 * 281.99198 * 19 18 2 34 34 H 1.09001 * 109.37750 * 41.76106 * 19 18 2 35 35 H 1.09000 * 109.59545 * 170.06357 * 20 19 18 36 36 H 1.08999 * 109.59919 * 290.36942 * 20 19 18 37 37 H 1.00900 * 111.00874 * 167.63333 * 21 20 19 38 38 H 1.08997 * 109.38589 * 170.44744 * 22 21 20 39 39 H 1.08997 * 109.38432 * 290.23862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 2.7296 -1.6963 -1.1193 6 7 1.7066 -0.2497 -2.4546 7 6 2.1945 -0.9406 -3.6508 8 1 3.1937 -1.3330 -3.4616 9 6 1.2501 -2.0942 -3.9945 10 6 2.2454 0.0278 -4.8045 11 1 1.9440 1.0549 -4.6610 12 6 2.6767 -0.3976 -6.0430 13 7 2.7206 0.4473 -7.0499 14 14 3.1973 -2.1743 -6.2913 15 1 2.0203 -2.9827 -6.6990 16 1 4.2356 -2.2424 -7.3508 17 1 3.7500 -2.7102 -5.0214 18 7 2.0183 -0.6907 1.1961 19 6 2.8556 0.0495 2.1359 20 6 2.8824 -0.6643 3.4887 21 7 3.2073 -2.0829 3.2682 22 6 2.0936 -2.7581 2.5887 23 6 1.6731 -1.9690 1.3813 24 8 0.9957 -2.5161 0.5369 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.1492 0.5391 -2.5435 29 1 0.2510 -1.7017 -4.1837 30 1 1.2134 -2.7945 -3.1600 31 1 1.6130 -2.6079 -4.8848 32 1 3.0237 0.1480 -7.9213 33 1 3.8697 0.1160 1.7419 34 1 2.4518 1.0535 2.2667 35 1 3.6409 -0.2105 4.1265 36 1 1.9059 -0.5806 3.9657 37 1 3.4318 -2.5420 4.1382 38 1 2.4088 -3.7550 2.2806 39 1 1.2492 -2.8409 3.2729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705740390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:36 Heat of formation + Delta-G solvation = -48.528515 kcal Electronic energy + Delta-G solvation = -21756.192211 eV Core-core repulsion = 18506.532355 eV Total energy + Delta-G solvation = -3249.659856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74949 -38.55304 -36.71249 -35.27716 -34.61113 -32.43303 -31.33183 -29.80172 -29.18504 -25.86444 -25.10267 -24.35133 -23.19310 -21.10048 -19.51541 -18.59596 -17.46266 -17.34117 -16.38774 -15.99940 -15.73917 -15.25506 -14.90230 -14.79556 -14.29239 -14.10319 -13.62062 -13.26095 -13.07895 -12.83805 -12.47402 -12.31990 -12.14401 -12.08515 -11.94984 -11.62857 -11.56767 -11.40603 -11.05997 -10.73410 -10.10290 -9.63508 -9.54122 -9.21410 -9.13593 -8.90629 -8.68679 -8.43599 -8.00285 -6.15441 -4.17075 2.73160 2.95772 3.29867 3.39984 3.40828 3.47920 3.78540 4.06758 4.38352 4.46703 4.56759 4.82940 4.98174 5.06679 5.09241 5.19646 5.22695 5.26554 5.37108 5.48307 5.64962 5.70574 5.84110 6.23299 6.38362 6.43510 6.48576 6.55050 6.69955 6.88435 7.00145 7.30511 7.41593 7.52384 7.63249 8.22836 8.36137 8.63594 8.82603 9.10118 9.46896 10.96763 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.004928 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.209381 B = 5680.156370 C = 5878.844047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 H 0.107 0.893 4 C 0.501 3.499 5 O -0.534 6.534 6 N -0.703 5.703 7 C 0.240 3.760 8 H 0.046 0.954 9 C -0.159 4.159 10 C -0.532 4.532 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.895 5.895 14 Si 0.886 3.114 15 H -0.276 1.276 16 H -0.295 1.295 17 H -0.262 1.262 18 N -0.589 5.589 19 C 0.118 3.882 20 C 0.040 3.960 21 N -0.680 5.680 22 C 0.046 3.954 23 C 0.527 3.473 24 O -0.525 6.525 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.392 0.608 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.266 0.734 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.350 0.650 38 H 0.112 0.888 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.530 0.531 22.705 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 H 0.125 0.875 4 C 0.284 3.716 5 O -0.410 6.410 6 N -0.352 5.352 7 C 0.136 3.864 8 H 0.063 0.937 9 C -0.217 4.217 10 C -0.570 4.570 11 H 0.097 0.903 12 C -0.125 4.125 13 N -0.532 5.532 14 Si 0.716 3.284 15 H -0.203 1.203 16 H -0.223 1.223 17 H -0.187 1.187 18 N -0.323 5.323 19 C -0.006 4.006 20 C -0.089 4.089 21 N -0.313 5.313 22 C -0.086 4.086 23 C 0.315 3.685 24 O -0.399 6.399 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.225 0.775 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.169 0.831 38 H 0.130 0.870 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.969 -0.360 21.550 21.642 hybrid contribution -0.547 -0.482 0.381 0.823 sum -2.516 -0.842 21.931 22.091 Atomic orbital electron populations 1.22143 0.92825 1.04891 1.02294 1.21007 0.96010 0.96412 0.84932 0.87505 1.20464 0.81144 0.85207 0.84804 1.90652 1.38176 1.25806 1.86378 1.46082 1.52446 1.31193 1.05489 1.19043 0.93768 0.90910 0.82658 0.93651 1.22420 1.00912 0.99135 0.99277 1.21059 1.45929 0.97308 0.92704 0.90257 1.24817 0.94480 0.97636 0.95589 1.69872 1.46797 1.35013 1.01505 0.86870 0.78136 0.85278 0.78160 1.20329 1.22252 1.18700 1.47090 1.51228 1.11720 1.22244 1.21541 0.95804 0.94767 0.88456 1.22306 1.00691 0.89483 0.96458 1.60750 1.39416 1.02576 1.28593 1.22098 0.93197 0.99259 0.94003 1.19808 0.79934 0.81274 0.87523 1.90726 1.38837 1.67608 1.42775 0.90881 0.89766 0.92218 0.77459 0.92982 0.94323 0.93731 0.92371 0.90817 0.90385 0.88644 0.93986 0.83116 0.86974 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.98 37.16 0.33 -1.82 16 2 C 0.12 1.84 3.05 -69.09 -0.21 1.62 16 3 H 0.11 1.25 7.84 -51.93 -0.41 0.85 16 4 C 0.50 10.27 6.39 -10.99 -0.07 10.20 16 5 O -0.53 -13.24 14.15 -15.83 -0.22 -13.47 16 6 N -0.70 -14.83 4.96 -54.93 -0.27 -15.11 16 7 C 0.24 6.07 2.15 -69.08 -0.15 5.92 16 8 H 0.05 1.27 6.63 -51.93 -0.34 0.93 16 9 C -0.16 -3.88 8.96 37.16 0.33 -3.55 16 10 C -0.53 -14.83 9.31 -34.44 -0.32 -15.16 16 11 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 12 C 0.08 2.25 5.45 -17.82 -0.10 2.16 16 13 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 14 Si 0.89 22.75 24.37 -169.99 -4.14 18.60 16 15 H -0.28 -6.90 6.87 56.52 0.39 -6.51 16 16 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 17 H -0.26 -6.80 6.53 56.52 0.37 -6.43 16 18 N -0.59 -8.24 2.61 -168.33 -0.44 -8.68 16 19 C 0.12 1.14 6.49 -4.32 -0.03 1.11 16 20 C 0.04 0.30 6.62 -3.68 -0.02 0.27 16 21 N -0.68 -6.24 6.93 -115.10 -0.80 -7.04 16 22 C 0.05 0.53 6.68 -5.19 -0.03 0.49 16 23 C 0.53 8.39 6.29 -11.68 -0.07 8.31 16 24 O -0.52 -10.59 12.99 -15.84 -0.21 -10.80 16 25 H 0.07 0.88 7.56 -51.93 -0.39 0.49 16 26 H 0.08 1.36 6.03 -51.93 -0.31 1.05 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.39 7.18 7.96 -40.82 -0.32 6.85 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 1.11 3.27 -51.93 -0.17 0.94 16 32 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 37 H 0.35 2.17 8.90 -39.29 -0.35 1.82 16 38 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -36.88 308.51 -6.70 -43.59 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.70 Total: 4.95 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -0.34 Total: 9.56 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.74 Total: -57.09 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.43 Total: -24.27 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.14 Total: 18.60 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.88 -6.70 -43.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705740390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.943 kcal (2) G-P(sol) polarization free energy of solvation -36.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds