Wall clock time and date at job start Mon Mar 30 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46870 * 2 1 4 4 C 1.50693 * 109.47182 * 240.00658 * 2 1 3 5 5 O 1.21281 * 120.00095 * 239.99756 * 4 2 1 6 6 N 1.34780 * 120.00182 * 59.99417 * 4 2 1 7 7 C 1.46500 * 119.99910 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.47129 * 324.99754 * 7 6 4 9 9 C 1.52997 * 109.47473 * 85.00011 * 7 6 4 10 10 C 1.50708 * 109.47008 * 205.00179 * 7 6 4 11 11 H 1.08000 * 119.99723 * 359.97438 * 10 7 6 12 12 C 1.37873 * 119.99930 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99779 * 179.97438 * 12 10 7 14 14 Si 1.86795 * 120.00284 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47308 * 89.99617 * 14 12 10 16 16 H 1.48501 * 109.47369 * 209.99691 * 14 12 10 17 17 H 1.48502 * 109.47235 * 329.99860 * 14 12 10 18 18 N 1.46499 * 109.47347 * 120.00285 * 2 1 3 19 19 C 1.46012 * 118.53390 * 239.99966 * 18 2 1 20 20 C 1.52980 * 110.04115 * 161.81592 * 19 18 2 21 21 N 1.47190 * 108.73106 * 50.29165 * 20 19 18 22 22 C 1.46905 * 110.17512 * 291.00464 * 21 20 19 23 23 C 1.33709 * 118.53759 * 59.72991 * 18 2 1 24 24 O 1.21288 * 118.62150 * 1.71548 * 23 18 2 25 25 H 1.08997 * 109.47722 * 59.99451 * 1 2 3 26 26 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99650 * 1 2 3 28 28 H 0.96994 * 120.00115 * 0.02562 * 6 4 2 29 29 H 1.09002 * 109.47153 * 59.99757 * 9 7 6 30 30 H 1.09001 * 109.46832 * 299.99948 * 9 7 6 31 31 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 32 32 H 0.96999 * 119.99874 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.37654 * 281.99198 * 19 18 2 34 34 H 1.09001 * 109.37750 * 41.76106 * 19 18 2 35 35 H 1.09000 * 109.59545 * 170.06357 * 20 19 18 36 36 H 1.08999 * 109.59919 * 290.36942 * 20 19 18 37 37 H 1.00900 * 111.00874 * 167.63333 * 21 20 19 38 38 H 1.08997 * 109.38589 * 170.44744 * 22 21 20 39 39 H 1.08997 * 109.38432 * 290.23862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 2.7296 -1.6963 -1.1193 6 7 1.7066 -0.2497 -2.4546 7 6 2.1945 -0.9406 -3.6508 8 1 3.1937 -1.3330 -3.4616 9 6 1.2501 -2.0942 -3.9945 10 6 2.2454 0.0278 -4.8045 11 1 1.9440 1.0549 -4.6610 12 6 2.6767 -0.3976 -6.0430 13 7 2.7206 0.4473 -7.0499 14 14 3.1973 -2.1743 -6.2913 15 1 2.0203 -2.9827 -6.6990 16 1 4.2356 -2.2424 -7.3508 17 1 3.7500 -2.7102 -5.0214 18 7 2.0183 -0.6907 1.1961 19 6 2.8556 0.0495 2.1359 20 6 2.8824 -0.6643 3.4887 21 7 3.2073 -2.0829 3.2682 22 6 2.0936 -2.7581 2.5887 23 6 1.6731 -1.9690 1.3813 24 8 0.9957 -2.5161 0.5369 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.1492 0.5391 -2.5435 29 1 0.2510 -1.7017 -4.1837 30 1 1.2134 -2.7945 -3.1600 31 1 1.6130 -2.6079 -4.8848 32 1 3.0237 0.1480 -7.9213 33 1 3.8697 0.1160 1.7419 34 1 2.4518 1.0535 2.2667 35 1 3.6409 -0.2105 4.1265 36 1 1.9059 -0.5806 3.9657 37 1 3.4318 -2.5420 4.1382 38 1 2.4088 -3.7550 2.2806 39 1 1.2492 -2.8409 3.2729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705740390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:36 Heat of formation + Delta-G solvation = -79.309072 kcal Electronic energy + Delta-G solvation = -21757.526956 eV Core-core repulsion = 18506.532355 eV Total energy + Delta-G solvation = -3250.994601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92995 -40.08778 -37.69473 -36.90288 -36.03057 -34.44168 -32.70302 -31.11153 -30.42949 -27.25183 -26.75992 -25.52729 -24.28604 -22.72175 -21.20532 -19.82924 -18.95698 -18.30967 -18.08190 -17.36612 -17.11616 -16.49164 -16.29160 -15.89401 -15.67443 -15.50466 -14.99952 -14.90298 -14.52730 -14.21335 -14.14364 -13.82537 -13.42170 -13.33167 -13.12308 -13.00032 -12.90684 -12.82855 -12.45332 -12.28464 -12.18477 -11.64920 -11.31043 -10.89448 -10.75957 -10.70284 -9.85347 -9.69421 -9.54073 -8.40530 -6.45255 1.23718 1.31348 1.41869 1.57821 1.82412 1.95384 2.23624 2.54300 2.95482 3.14539 3.55169 3.84750 3.89383 4.04929 4.07117 4.19263 4.31514 4.40126 4.48003 4.52134 4.55965 4.66418 4.67782 4.79961 4.84611 4.95936 4.99227 5.21473 5.27594 5.39600 5.43257 5.66420 5.73878 6.13643 6.37368 6.48806 6.55674 6.88430 7.17769 7.24202 7.51466 8.74537 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.004928 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.209381 B = 5680.156370 C = 5878.844047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.146 0.854 4 C 0.494 3.506 5 O -0.582 6.582 6 N -0.701 5.701 7 C 0.246 3.754 8 H 0.015 0.985 9 C -0.151 4.151 10 C -0.529 4.529 11 H 0.063 0.937 12 C 0.034 3.966 13 N -0.930 5.930 14 Si 0.934 3.066 15 H -0.262 1.262 16 H -0.287 1.287 17 H -0.272 1.272 18 N -0.589 5.589 19 C 0.106 3.894 20 C 0.044 3.956 21 N -0.693 5.693 22 C 0.054 3.946 23 C 0.512 3.488 24 O -0.580 6.580 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.407 0.593 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.271 0.729 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.368 0.632 38 H 0.099 0.901 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 1.401 25.072 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.164 0.836 4 C 0.280 3.720 5 O -0.461 6.461 6 N -0.351 5.351 7 C 0.141 3.859 8 H 0.032 0.968 9 C -0.209 4.209 10 C -0.567 4.567 11 H 0.081 0.919 12 C -0.166 4.166 13 N -0.568 5.568 14 Si 0.762 3.238 15 H -0.188 1.188 16 H -0.214 1.214 17 H -0.197 1.197 18 N -0.321 5.321 19 C -0.016 4.016 20 C -0.085 4.085 21 N -0.329 5.329 22 C -0.078 4.078 23 C 0.301 3.699 24 O -0.459 6.459 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.242 0.758 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.076 0.924 37 H 0.189 0.811 38 H 0.117 0.883 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.298 0.557 23.970 24.086 hybrid contribution -0.403 -0.677 -0.304 0.845 sum -2.701 -0.120 23.665 23.819 Atomic orbital electron populations 1.22081 0.91311 1.03381 1.04461 1.21109 0.97092 0.97265 0.82527 0.83641 1.21562 0.79858 0.84695 0.85922 1.90623 1.40275 1.28075 1.87146 1.45923 1.52720 1.31577 1.04918 1.18666 0.92810 0.90885 0.83528 0.96753 1.22305 1.01257 0.98561 0.98752 1.21221 1.44994 0.97040 0.93468 0.91905 1.25452 0.94715 1.00838 0.95578 1.69953 1.48098 1.36670 1.02123 0.86077 0.78427 0.81565 0.77699 1.18763 1.21426 1.19713 1.47322 1.50984 1.11598 1.22221 1.21944 0.94548 0.96483 0.88625 1.22413 1.02666 0.88029 0.95428 1.60695 1.38582 1.03799 1.29819 1.21946 0.94885 0.97976 0.93027 1.20658 0.79144 0.81927 0.88180 1.90697 1.41330 1.68910 1.44965 0.89965 0.93052 0.88757 0.75760 0.91661 0.94897 0.94192 0.91966 0.92222 0.86743 0.85623 0.92368 0.81054 0.88253 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.98 71.98 0.65 -3.10 16 2 C 0.13 3.54 3.05 44.24 0.13 3.68 16 3 H 0.15 2.89 7.84 -2.38 -0.02 2.88 16 4 C 0.49 20.23 6.39 87.65 0.56 20.79 16 5 O -0.58 -29.58 14.15 17.41 0.25 -29.33 16 6 N -0.70 -29.55 4.96 -446.09 -2.21 -31.76 16 7 C 0.25 12.60 2.15 44.25 0.10 12.70 16 8 H 0.01 0.84 6.63 -2.39 -0.02 0.82 16 9 C -0.15 -7.35 8.96 71.98 0.65 -6.71 16 10 C -0.53 -29.76 9.31 25.60 0.24 -29.52 16 11 H 0.06 3.68 7.98 -2.91 -0.02 3.65 16 12 C 0.03 1.99 5.45 84.65 0.46 2.45 16 13 N -0.93 -56.43 13.96 21.45 0.30 -56.13 16 14 Si 0.93 47.02 24.37 68.60 1.67 48.70 16 15 H -0.26 -12.49 6.87 99.48 0.68 -11.81 16 16 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 17 H -0.27 -14.03 6.53 99.48 0.65 -13.38 16 18 N -0.59 -15.39 2.61 -805.45 -2.10 -17.50 16 19 C 0.11 1.70 6.49 86.46 0.56 2.26 16 20 C 0.04 0.47 6.62 86.24 0.57 1.04 16 21 N -0.69 -11.00 6.93 -518.05 -3.59 -14.59 16 22 C 0.05 1.16 6.68 85.41 0.57 1.73 16 23 C 0.51 16.01 6.29 87.68 0.55 16.56 16 24 O -0.58 -24.00 12.99 17.39 0.23 -23.77 16 25 H 0.08 1.81 7.56 -2.39 -0.02 1.79 16 26 H 0.05 1.64 6.03 -2.39 -0.01 1.62 16 27 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.41 14.58 7.96 -92.71 -0.74 13.84 16 29 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.96 3.27 -2.38 -0.01 1.95 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.01 8.09 -2.39 -0.02 1.00 16 35 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.49 8.08 -2.39 -0.02 0.47 16 37 H 0.37 3.50 8.90 -89.69 -0.80 2.70 16 38 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -83.01 308.51 -0.96 -83.98 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -0.54 Total: 18.54 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 5.04 Total: 21.88 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -7.61 Total: -119.98 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: 0.47 Total: -53.11 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.67 Total: 48.70 kcal Total: -83.01 -0.96 -83.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705740390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.670 kcal (2) G-P(sol) polarization free energy of solvation -83.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds