Wall clock time and date at job start Mon Mar 30 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47886 * 2 1 4 4 C 1.50699 * 109.47016 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00199 * 120.00100 * 4 2 1 6 6 C 1.37877 * 120.00168 * 299.99657 * 4 2 1 7 7 N 1.31508 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99756 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47040 * 89.99990 * 8 6 4 10 10 H 1.48498 * 109.47180 * 210.00618 * 8 6 4 11 11 H 1.48509 * 109.47126 * 330.00046 * 8 6 4 12 12 N 1.46512 * 109.46801 * 239.99875 * 2 1 3 13 13 C 1.34770 * 119.99646 * 85.00197 * 12 2 1 14 14 O 1.21281 * 120.00244 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00019 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47122 * 60.00417 * 15 13 12 17 17 C 1.53006 * 109.47184 * 300.00531 * 15 13 12 18 18 N 1.46500 * 109.47583 * 180.02562 * 15 13 12 19 19 C 1.46004 * 118.53806 * 239.73942 * 18 15 13 20 20 C 1.53171 * 109.94268 * 161.66490 * 19 18 15 21 21 N 1.47183 * 108.57132 * 50.66396 * 20 19 18 22 22 C 1.46902 * 110.17520 * 290.82546 * 21 20 19 23 23 C 1.33718 * 118.53343 * 60.00358 * 18 15 13 24 24 O 1.21279 * 118.62480 * 1.68349 * 23 18 15 25 25 H 1.09000 * 109.46718 * 299.99951 * 1 2 3 26 26 H 1.09007 * 109.47011 * 59.99569 * 1 2 3 27 27 H 1.08995 * 109.47370 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00325 * 179.97438 * 7 6 4 29 29 H 0.96992 * 119.99836 * 265.00309 * 12 2 1 30 30 H 1.09001 * 109.47002 * 299.99404 * 17 15 13 31 31 H 1.08993 * 109.46955 * 59.99842 * 17 15 13 32 32 H 1.09000 * 109.47050 * 179.97438 * 17 15 13 33 33 H 1.09002 * 109.37352 * 282.01032 * 19 18 15 34 34 H 1.08997 * 109.38028 * 41.66019 * 19 18 15 35 35 H 1.09006 * 109.81297 * 290.85139 * 20 19 18 36 36 H 1.09005 * 109.65268 * 170.38177 * 20 19 18 37 37 H 1.00894 * 111.00368 * 54.20340 * 21 20 19 38 38 H 1.08999 * 109.39019 * 290.14481 * 22 21 20 39 39 H 1.09001 * 109.38265 * 170.45597 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8745 2.6993 10 1 0.9774 1.9953 3.9070 11 1 0.8493 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1963 13 6 2.1469 -0.0183 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6497 -0.7285 -3.5875 16 1 1.9775 -1.5508 -3.8326 17 6 4.0525 -1.2787 -3.3214 18 7 2.6995 0.2129 -4.7089 19 6 1.9037 -0.0764 -5.8983 20 6 1.7288 1.1965 -6.7322 21 7 3.0524 1.8053 -6.9415 22 6 3.5698 2.3409 -5.6752 23 6 3.4759 1.2961 -4.5995 24 8 4.1320 1.4411 -3.5898 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.9040 -0.5276 4.4375 29 1 2.2489 -1.6318 -1.1527 30 1 4.7248 -0.4564 -3.0764 31 1 4.0158 -1.9791 -2.4871 32 1 4.4159 -1.7928 -4.2112 33 1 2.4080 -0.8369 -6.4946 34 1 0.9239 -0.4466 -5.5968 35 1 1.0830 1.8982 -6.2042 36 1 1.2853 0.9455 -7.6957 37 1 3.6967 1.1408 -7.3432 38 1 2.9838 3.2129 -5.3848 39 1 4.6116 2.6339 -5.8051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705740392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:39 Heat of formation + Delta-G solvation = -50.474059 kcal Electronic energy + Delta-G solvation = -21777.320883 eV Core-core repulsion = 18527.576662 eV Total energy + Delta-G solvation = -3249.744221 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88951 -38.66686 -36.80018 -35.28946 -34.65516 -32.46152 -31.28150 -29.85342 -29.19994 -25.61473 -25.19912 -24.36522 -23.37823 -21.26396 -19.66995 -18.97585 -17.61372 -17.15161 -16.36000 -15.86395 -15.71638 -15.30033 -15.19811 -14.67436 -14.26860 -14.05473 -13.60548 -13.27369 -13.14612 -12.95910 -12.54838 -12.31170 -12.18578 -12.10197 -11.86518 -11.67063 -11.57273 -11.46497 -11.15107 -10.79066 -10.22184 -10.15899 -9.67911 -9.31365 -9.19795 -8.72724 -8.62729 -8.53123 -8.08464 -6.17980 -4.19839 2.64135 2.88396 3.24544 3.30011 3.37556 3.43459 3.87171 4.00491 4.34132 4.34957 4.68224 4.71472 4.94160 5.06525 5.14686 5.17908 5.22074 5.27932 5.30405 5.53448 5.57498 5.66653 5.81842 6.20443 6.32709 6.36903 6.39097 6.46799 6.57750 6.86709 6.88427 7.22294 7.35443 7.43777 7.56975 8.17882 8.29975 8.57395 8.79627 9.00882 9.43445 10.94333 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033149 B = 0.004961 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.478327 B = 5643.138364 C = 5801.128916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.239 3.761 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.701 5.701 13 C 0.501 3.499 14 O -0.539 6.539 15 C 0.124 3.876 16 H 0.105 0.895 17 C -0.164 4.164 18 N -0.595 5.595 19 C 0.078 3.922 20 C 0.041 3.959 21 N -0.678 5.678 22 C 0.047 3.953 23 C 0.489 3.511 24 O -0.521 6.521 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.267 0.733 29 H 0.393 0.607 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.346 0.654 38 H 0.110 0.890 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 -0.949 -21.967 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.135 3.865 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.350 5.350 13 C 0.285 3.715 14 O -0.417 6.417 15 C 0.017 3.983 16 H 0.122 0.878 17 C -0.222 4.222 18 N -0.330 5.330 19 C -0.047 4.047 20 C -0.089 4.089 21 N -0.307 5.307 22 C -0.085 4.085 23 C 0.275 3.725 24 O -0.395 6.395 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.226 0.774 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.163 0.837 38 H 0.128 0.872 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.493 0.635 -21.473 21.488 hybrid contribution -0.465 -0.703 0.821 1.177 sum -0.957 -0.068 -20.652 20.674 Atomic orbital electron populations 1.22439 0.99458 1.00684 0.99160 1.19064 0.89910 0.94732 0.82792 0.93490 1.21039 1.33110 1.14343 0.88542 0.90224 1.24819 0.95534 0.96641 0.95525 1.69864 1.45005 1.40168 0.98011 0.86876 0.80423 0.83737 0.77453 1.20358 1.22128 1.18728 1.46085 1.65597 1.13647 1.09627 1.20488 0.78425 0.87722 0.84911 1.90628 1.50535 1.15707 1.84796 1.21023 0.99345 0.91367 0.86568 0.87759 1.22161 0.95686 1.02422 1.01965 1.47213 1.45977 1.23809 1.16031 1.22270 0.96468 0.99172 0.86765 1.22479 0.92169 0.94134 1.00143 1.60882 1.04723 1.40460 1.24661 1.22269 1.03513 0.96827 0.85878 1.21099 0.79312 0.82490 0.89570 1.90724 1.43377 1.75024 1.30345 0.93502 0.94784 0.92878 0.92325 0.77387 0.89423 0.90886 0.92294 0.91535 0.90269 0.89545 0.88432 0.83681 0.87242 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 8.96 37.16 0.33 -3.33 16 2 C 0.24 5.95 2.15 -69.08 -0.15 5.80 16 3 H 0.05 1.33 6.63 -51.93 -0.34 0.98 16 4 C -0.53 -14.83 9.31 -34.44 -0.32 -15.15 16 5 H 0.08 2.32 7.98 -52.48 -0.42 1.90 16 6 C 0.08 2.25 5.45 -17.82 -0.10 2.16 16 7 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 8 Si 0.89 22.49 24.37 -169.99 -4.14 18.34 16 9 H -0.28 -6.74 6.87 56.52 0.39 -6.35 16 10 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.26 -6.73 6.53 56.52 0.37 -6.36 16 12 N -0.70 -14.53 4.96 -54.93 -0.27 -14.80 16 13 C 0.50 10.01 6.41 -10.99 -0.07 9.94 16 14 O -0.54 -12.93 14.23 -15.04 -0.21 -13.14 16 15 C 0.12 1.79 3.05 -69.08 -0.21 1.58 16 16 H 0.10 1.16 7.84 -51.93 -0.41 0.75 16 17 C -0.16 -2.24 8.99 37.16 0.33 -1.91 16 18 N -0.60 -7.83 2.61 -168.21 -0.44 -8.27 16 19 C 0.08 0.66 6.40 -4.22 -0.03 0.63 16 20 C 0.04 0.31 6.67 -3.58 -0.02 0.29 16 21 N -0.68 -5.69 6.99 -114.98 -0.80 -6.49 16 22 C 0.05 0.53 6.68 -5.19 -0.03 0.50 16 23 C 0.49 7.49 6.24 -11.67 -0.07 7.42 16 24 O -0.52 -10.52 13.05 -15.04 -0.20 -10.72 16 25 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 29 H 0.39 7.09 7.96 -40.82 -0.32 6.76 16 30 H 0.09 1.50 5.92 -51.93 -0.31 1.19 16 31 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.35 2.35 8.77 -39.29 -0.34 2.00 16 38 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -36.02 308.40 -6.68 -42.70 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.69 Total: 6.04 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -0.34 Total: 7.92 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.74 Total: -55.78 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.41 Total: -23.86 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.34 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.02 -6.68 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705740392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.775 kcal (2) G-P(sol) polarization free energy of solvation -36.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds