Wall clock time and date at job start Mon Mar 30 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47886 * 2 1 4 4 C 1.50699 * 109.47016 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00199 * 120.00100 * 4 2 1 6 6 C 1.37877 * 120.00168 * 299.99657 * 4 2 1 7 7 N 1.31508 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99756 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47040 * 89.99990 * 8 6 4 10 10 H 1.48498 * 109.47180 * 210.00618 * 8 6 4 11 11 H 1.48509 * 109.47126 * 330.00046 * 8 6 4 12 12 N 1.46512 * 109.46801 * 239.99875 * 2 1 3 13 13 C 1.34770 * 119.99646 * 85.00197 * 12 2 1 14 14 O 1.21281 * 120.00244 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00019 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47122 * 60.00417 * 15 13 12 17 17 C 1.53006 * 109.47184 * 300.00531 * 15 13 12 18 18 N 1.46500 * 109.47583 * 180.02562 * 15 13 12 19 19 C 1.46004 * 118.53806 * 239.73942 * 18 15 13 20 20 C 1.53171 * 109.94268 * 161.66490 * 19 18 15 21 21 N 1.47183 * 108.57132 * 50.66396 * 20 19 18 22 22 C 1.46902 * 110.17520 * 290.82546 * 21 20 19 23 23 C 1.33718 * 118.53343 * 60.00358 * 18 15 13 24 24 O 1.21279 * 118.62480 * 1.68349 * 23 18 15 25 25 H 1.09000 * 109.46718 * 299.99951 * 1 2 3 26 26 H 1.09007 * 109.47011 * 59.99569 * 1 2 3 27 27 H 1.08995 * 109.47370 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00325 * 179.97438 * 7 6 4 29 29 H 0.96992 * 119.99836 * 265.00309 * 12 2 1 30 30 H 1.09001 * 109.47002 * 299.99404 * 17 15 13 31 31 H 1.08993 * 109.46955 * 59.99842 * 17 15 13 32 32 H 1.09000 * 109.47050 * 179.97438 * 17 15 13 33 33 H 1.09002 * 109.37352 * 282.01032 * 19 18 15 34 34 H 1.08997 * 109.38028 * 41.66019 * 19 18 15 35 35 H 1.09006 * 109.81297 * 290.85139 * 20 19 18 36 36 H 1.09005 * 109.65268 * 170.38177 * 20 19 18 37 37 H 1.00894 * 111.00368 * 54.20340 * 21 20 19 38 38 H 1.08999 * 109.39019 * 290.14481 * 22 21 20 39 39 H 1.09001 * 109.38265 * 170.45597 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8745 2.6993 10 1 0.9774 1.9953 3.9070 11 1 0.8493 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1963 13 6 2.1469 -0.0183 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6497 -0.7285 -3.5875 16 1 1.9775 -1.5508 -3.8326 17 6 4.0525 -1.2787 -3.3214 18 7 2.6995 0.2129 -4.7089 19 6 1.9037 -0.0764 -5.8983 20 6 1.7288 1.1965 -6.7322 21 7 3.0524 1.8053 -6.9415 22 6 3.5698 2.3409 -5.6752 23 6 3.4759 1.2961 -4.5995 24 8 4.1320 1.4411 -3.5898 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.9040 -0.5276 4.4375 29 1 2.2489 -1.6318 -1.1527 30 1 4.7248 -0.4564 -3.0764 31 1 4.0158 -1.9791 -2.4871 32 1 4.4159 -1.7928 -4.2112 33 1 2.4080 -0.8369 -6.4946 34 1 0.9239 -0.4466 -5.5968 35 1 1.0830 1.8982 -6.2042 36 1 1.2853 0.9455 -7.6957 37 1 3.6967 1.1408 -7.3432 38 1 2.9838 3.2129 -5.3848 39 1 4.6116 2.6339 -5.8051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705740392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:38 Heat of formation + Delta-G solvation = -80.655733 kcal Electronic energy + Delta-G solvation = -21778.629659 eV Core-core repulsion = 18527.576662 eV Total energy + Delta-G solvation = -3251.052997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03419 -40.17132 -37.80446 -36.92824 -36.00729 -34.46263 -32.64773 -31.08961 -30.45652 -27.27673 -26.49817 -25.57665 -24.36142 -22.86494 -21.31405 -20.12725 -19.19725 -18.15702 -18.11500 -17.30717 -17.00226 -16.66816 -16.17605 -15.99747 -15.63300 -15.47932 -14.95569 -14.80691 -14.73956 -14.17818 -14.01295 -13.75033 -13.52357 -13.35377 -13.23688 -13.05618 -12.83698 -12.76441 -12.52473 -12.22665 -12.17466 -11.67192 -11.33708 -11.31408 -10.90914 -10.78666 -9.90049 -9.74029 -9.43840 -8.42098 -6.47520 1.21239 1.30761 1.40369 1.52090 1.76339 1.88113 2.22131 2.51016 2.93973 3.19236 3.48021 3.77253 3.95938 4.00082 4.04843 4.09771 4.32589 4.39876 4.49422 4.51332 4.55145 4.64988 4.67011 4.75838 4.81088 4.95086 4.99055 5.18786 5.26558 5.38256 5.40030 5.62519 5.64417 6.10899 6.30319 6.42244 6.53389 6.84113 7.14950 7.20480 7.45725 8.73283 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033149 B = 0.004961 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.478327 B = 5643.138364 C = 5801.128916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.244 3.756 3 H 0.008 0.992 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.938 3.062 9 H -0.253 1.253 10 H -0.291 1.291 11 H -0.272 1.272 12 N -0.700 5.700 13 C 0.494 3.506 14 O -0.584 6.584 15 C 0.130 3.870 16 H 0.150 0.850 17 C -0.157 4.157 18 N -0.593 5.593 19 C 0.071 3.929 20 C 0.042 3.958 21 N -0.668 5.668 22 C 0.057 3.943 23 C 0.478 3.522 24 O -0.582 6.582 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.271 0.729 29 H 0.406 0.594 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.359 0.641 38 H 0.099 0.901 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -1.972 -24.777 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.139 3.861 3 H 0.026 0.974 4 C -0.571 4.571 5 H 0.076 0.924 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.766 3.234 9 H -0.179 1.179 10 H -0.218 1.218 11 H -0.198 1.198 12 N -0.350 5.350 13 C 0.280 3.720 14 O -0.464 6.464 15 C 0.023 3.977 16 H 0.168 0.832 17 C -0.215 4.215 18 N -0.327 5.327 19 C -0.052 4.052 20 C -0.087 4.087 21 N -0.299 5.299 22 C -0.076 4.076 23 C 0.266 3.734 24 O -0.460 6.460 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.242 0.758 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.178 0.822 38 H 0.117 0.883 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.844 -0.444 -24.351 24.425 hybrid contribution 0.001 -0.423 1.628 1.682 sum -1.843 -0.867 -22.723 22.815 Atomic orbital electron populations 1.22291 0.97458 1.01844 0.99212 1.18686 0.91366 0.92592 0.83435 0.97420 1.21247 1.32377 1.13577 0.89895 0.92413 1.25522 0.96859 0.99171 0.95357 1.69962 1.46596 1.41866 0.98624 0.86018 0.80131 0.80361 0.76894 1.17884 1.21771 1.19787 1.45933 1.65839 1.14233 1.08997 1.21546 0.77038 0.87387 0.85997 1.90602 1.52221 1.17860 1.85675 1.21092 1.00284 0.91942 0.84431 0.83238 1.22094 0.94436 1.01216 1.03768 1.47418 1.45540 1.22894 1.16810 1.22660 0.96821 1.00428 0.85290 1.22573 0.91380 0.93268 1.01524 1.60891 1.05357 1.41192 1.22477 1.22164 1.04137 0.95337 0.85939 1.21921 0.78591 0.83352 0.89570 1.90703 1.45984 1.76480 1.32869 0.94249 0.93848 0.91088 0.91972 0.75805 0.93300 0.90455 0.88829 0.88032 0.89089 0.91588 0.84884 0.82179 0.88281 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.73 8.96 71.98 0.65 -6.09 16 2 C 0.24 12.30 2.15 44.24 0.10 12.40 16 3 H 0.01 0.46 6.63 -2.39 -0.02 0.45 16 4 C -0.53 -30.21 9.31 25.60 0.24 -29.97 16 5 H 0.06 3.45 7.98 -2.91 -0.02 3.43 16 6 C 0.03 1.80 5.45 84.66 0.46 2.26 16 7 N -0.93 -57.07 13.96 21.45 0.30 -56.77 16 8 Si 0.94 46.64 24.37 68.60 1.67 48.31 16 9 H -0.25 -11.60 6.87 99.48 0.68 -10.91 16 10 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 11 H -0.27 -13.91 6.53 99.48 0.65 -13.26 16 12 N -0.70 -28.94 4.96 -446.10 -2.21 -31.15 16 13 C 0.49 19.59 6.41 87.66 0.56 20.15 16 14 O -0.58 -28.48 14.23 16.66 0.24 -28.24 16 15 C 0.13 3.47 3.05 44.25 0.13 3.60 16 16 H 0.15 2.65 7.84 -2.39 -0.02 2.64 16 17 C -0.16 -4.05 8.99 71.98 0.65 -3.40 16 18 N -0.59 -14.33 2.61 -805.06 -2.10 -16.43 16 19 C 0.07 0.91 6.40 86.53 0.55 1.47 16 20 C 0.04 0.50 6.67 86.31 0.58 1.08 16 21 N -0.67 -9.40 6.99 -517.69 -3.62 -13.02 16 22 C 0.06 1.23 6.68 85.42 0.57 1.81 16 23 C 0.48 14.49 6.24 87.68 0.55 15.03 16 24 O -0.58 -24.38 13.05 16.67 0.22 -24.17 16 25 H 0.04 1.81 3.27 -2.39 -0.01 1.80 16 26 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.41 14.40 7.96 -92.71 -0.74 13.66 16 30 H 0.05 1.69 5.92 -2.39 -0.01 1.67 16 31 H 0.08 1.88 7.56 -2.39 -0.02 1.87 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 1.03 8.09 -2.39 -0.02 1.01 16 35 H 0.07 1.09 8.08 -2.38 -0.02 1.07 16 36 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.36 3.60 8.77 -89.70 -0.79 2.82 16 38 H 0.10 2.36 8.14 -2.39 -0.02 2.35 16 39 H 0.12 2.28 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -82.19 308.40 -1.01 -83.20 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.53 Total: 19.95 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 5.03 Total: 18.33 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -7.63 Total: -117.38 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: 0.45 Total: -52.41 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.67 Total: 48.31 kcal Total: -82.19 -1.01 -83.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705740392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.544 kcal (2) G-P(sol) polarization free energy of solvation -82.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds