Wall clock time and date at job start Mon Mar 30 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99527 * 2 1 4 4 H 1.48494 * 109.47166 * 269.99890 * 3 2 1 5 5 H 1.48502 * 109.47140 * 29.99900 * 3 2 1 6 6 H 1.48493 * 109.47123 * 149.99810 * 3 2 1 7 7 C 1.37876 * 120.00563 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99882 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47452 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 12 17 17 C 1.46018 * 118.53569 * 90.00102 * 16 15 13 18 18 C 1.52980 * 110.04158 * 161.81342 * 17 16 15 19 19 N 1.47193 * 108.72926 * 50.29486 * 18 17 16 20 20 C 1.46899 * 110.17129 * 290.99777 * 19 18 17 21 21 C 1.33716 * 118.54181 * 269.73014 * 16 15 13 22 22 O 1.21283 * 118.61906 * 1.70728 * 21 16 15 23 23 H 0.96996 * 120.00667 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47789 * 60.00124 * 9 7 2 25 25 H 1.09002 * 109.47002 * 299.99787 * 9 7 2 26 26 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 27 27 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 28 28 H 1.09001 * 109.46832 * 59.99801 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99992 * 11 10 9 30 30 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 33 33 H 1.09000 * 109.37394 * 281.99001 * 17 16 15 34 34 H 1.08999 * 109.37317 * 41.63804 * 17 16 15 35 35 H 1.08998 * 109.59348 * 170.06159 * 18 17 16 36 36 H 1.08996 * 109.59682 * 290.36773 * 18 17 16 37 37 H 1.00903 * 110.99694 * 167.63090 * 19 18 17 38 38 H 1.09006 * 109.38476 * 170.45678 * 20 19 18 39 39 H 1.09001 * 109.38784 * 290.24785 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 6 4.0218 -2.6363 0.0010 11 6 5.5518 -2.6362 0.0009 12 7 6.0401 -4.0174 0.0014 13 6 7.3653 -4.2635 0.0020 14 8 8.1533 -3.3417 0.0016 15 6 7.8677 -5.6843 0.0019 16 7 9.3327 -5.6842 0.0020 17 6 10.0302 -5.6842 1.2848 18 6 11.4802 -6.1326 1.0932 19 7 12.0772 -5.3474 0.0007 20 6 11.4696 -5.7221 -1.2832 21 6 9.9716 -5.6896 -1.1726 22 8 9.3144 -5.6626 -2.1916 23 1 -0.4851 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8752 -0.6801 -0.8889 26 1 3.6588 -3.1499 -0.8892 27 1 3.6581 -3.1503 0.8907 28 1 5.9150 -2.1224 0.8910 29 1 5.9150 -2.1223 -0.8890 30 1 5.4099 -4.7547 0.0021 31 1 7.5040 -6.1983 0.8917 32 1 7.5048 -6.1980 -0.8883 33 1 10.0151 -4.6784 1.7046 34 1 9.5278 -6.3675 1.9695 35 1 12.0397 -5.9632 2.0131 36 1 11.5047 -7.1925 0.8403 37 1 13.0789 -5.4667 -0.0247 38 1 11.7932 -5.0230 -2.0543 39 1 11.7858 -6.7298 -1.5527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705983451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:55 Heat of formation + Delta-G solvation = -68.364823 kcal Electronic energy + Delta-G solvation = -20254.408678 eV Core-core repulsion = 17003.888656 eV Total energy + Delta-G solvation = -3250.520023 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88641 -39.13728 -37.05350 -35.62013 -34.83559 -33.29890 -31.52794 -30.29504 -28.98591 -26.96544 -25.39789 -23.59030 -22.67588 -20.80407 -20.09061 -18.80962 -17.62542 -17.28437 -17.17492 -16.75573 -15.88864 -15.69316 -15.40401 -15.04639 -14.86786 -14.23217 -14.13681 -13.89985 -13.60597 -13.19086 -12.69425 -12.67000 -12.46926 -12.14528 -11.95234 -11.90302 -11.63793 -11.06398 -10.87544 -10.25977 -10.17852 -9.99238 -9.81501 -9.68753 -9.21977 -9.13393 -8.87409 -8.82902 -8.54393 -6.05320 -4.03985 2.28273 2.59416 2.73439 3.32789 3.39941 3.44630 3.45231 3.57336 4.14071 4.33918 4.45695 4.61678 4.73836 4.81674 4.85737 4.93632 5.10343 5.13267 5.25825 5.28871 5.54780 5.58549 5.68265 5.91461 6.03875 6.21070 6.37483 6.46815 6.67718 6.72109 6.81320 7.09996 7.24412 7.37807 7.63123 7.77757 7.88169 8.35198 8.51473 8.98476 9.57063 11.07925 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042053 B = 0.002980 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.672714 B = 9393.062021 C = 9503.597994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.725 5.725 13 C 0.493 3.507 14 O -0.533 6.533 15 C 0.089 3.911 16 N -0.583 5.583 17 C 0.116 3.884 18 C 0.040 3.960 19 N -0.680 5.680 20 C 0.046 3.954 21 C 0.525 3.475 22 O -0.545 6.545 23 H 0.263 0.737 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.399 0.601 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.353 0.647 38 H 0.115 0.885 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.279 -16.955 3.655 29.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.377 5.377 13 C 0.277 3.723 14 O -0.409 6.409 15 C -0.037 4.037 16 N -0.316 5.316 17 C -0.007 4.007 18 C -0.090 4.090 19 N -0.313 5.313 20 C -0.085 4.085 21 C 0.313 3.687 22 O -0.422 6.422 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.233 0.767 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.172 0.828 38 H 0.133 0.867 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.968 -15.591 3.212 28.773 hybrid contribution 0.362 -0.216 -0.072 0.428 sum 24.330 -15.807 3.140 29.184 Atomic orbital electron populations 1.69910 1.06313 1.26959 1.51064 1.25027 0.94747 0.99239 0.94462 0.86774 0.80384 0.83513 0.78625 1.20226 1.21368 1.18910 1.21099 0.89314 0.94513 1.51046 0.90997 1.19505 0.97254 0.91516 0.96653 1.21703 0.90617 1.01029 1.01726 1.21633 0.96091 0.81160 1.01844 1.46126 1.06534 1.10034 1.75035 1.21028 0.82815 0.91763 0.76730 1.90713 1.55294 1.45990 1.48879 1.21389 0.81454 0.95245 1.05653 1.46931 1.05412 1.72666 1.06565 1.21607 0.91542 1.03002 0.84559 1.22324 0.95095 0.95440 0.96157 1.60753 1.09795 1.58146 1.02647 1.22068 0.90762 1.01975 0.93734 1.20060 0.90372 0.75367 0.82884 1.90753 1.66854 1.50053 1.34545 0.92698 0.96330 0.96750 0.92085 0.92093 0.91881 0.91886 0.76677 0.87458 0.86697 0.90198 0.90195 0.88392 0.93841 0.82782 0.86698 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.14 5.27 -26.73 -0.14 -2.28 16 11 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 12 N -0.73 -10.16 5.56 -60.30 -0.33 -10.50 16 13 C 0.49 7.30 7.89 -10.98 -0.09 7.21 16 14 O -0.53 -10.24 16.43 5.56 0.09 -10.15 16 15 C 0.09 0.94 5.75 -5.19 -0.03 0.91 16 16 N -0.58 -6.37 2.32 -175.96 -0.41 -6.78 16 17 C 0.12 0.89 6.62 -4.31 -0.03 0.86 16 18 C 0.04 0.21 6.62 -3.67 -0.02 0.19 16 19 N -0.68 -4.77 6.93 -115.10 -0.80 -5.57 16 20 C 0.05 0.40 6.68 -5.20 -0.03 0.36 16 21 C 0.53 6.65 7.55 -11.68 -0.09 6.56 16 22 O -0.55 -9.03 16.33 5.56 0.09 -8.94 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 25 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.40 4.34 8.47 -40.82 -0.35 3.99 16 31 H 0.11 0.70 7.92 -51.93 -0.41 0.29 16 32 H 0.12 1.21 7.25 -51.93 -0.38 0.84 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.39 7.98 -51.93 -0.41 -0.03 16 35 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 37 H 0.35 1.49 8.90 -39.29 -0.35 1.14 16 38 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -37.82 325.78 -7.40 -45.22 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.05 Total: -0.40 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.00 Total: 2.06 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.77 Total: -50.07 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.18 Total: -19.09 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.82 -7.40 -45.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705983451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.145 kcal (2) G-P(sol) polarization free energy of solvation -37.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds