Wall clock time and date at job start Mon Mar 30 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99527 * 2 1 4 4 H 1.48494 * 109.47166 * 269.99890 * 3 2 1 5 5 H 1.48502 * 109.47140 * 29.99900 * 3 2 1 6 6 H 1.48493 * 109.47123 * 149.99810 * 3 2 1 7 7 C 1.37876 * 120.00563 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99882 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47452 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 12 17 17 C 1.46018 * 118.53569 * 90.00102 * 16 15 13 18 18 C 1.52980 * 110.04158 * 161.81342 * 17 16 15 19 19 N 1.47193 * 108.72926 * 50.29486 * 18 17 16 20 20 C 1.46899 * 110.17129 * 290.99777 * 19 18 17 21 21 C 1.33716 * 118.54181 * 269.73014 * 16 15 13 22 22 O 1.21283 * 118.61906 * 1.70728 * 21 16 15 23 23 H 0.96996 * 120.00667 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47789 * 60.00124 * 9 7 2 25 25 H 1.09002 * 109.47002 * 299.99787 * 9 7 2 26 26 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 27 27 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 28 28 H 1.09001 * 109.46832 * 59.99801 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99992 * 11 10 9 30 30 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 33 33 H 1.09000 * 109.37394 * 281.99001 * 17 16 15 34 34 H 1.08999 * 109.37317 * 41.63804 * 17 16 15 35 35 H 1.08998 * 109.59348 * 170.06159 * 18 17 16 36 36 H 1.08996 * 109.59682 * 290.36773 * 18 17 16 37 37 H 1.00903 * 110.99694 * 167.63090 * 19 18 17 38 38 H 1.09006 * 109.38476 * 170.45678 * 20 19 18 39 39 H 1.09001 * 109.38784 * 290.24785 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 6 4.0218 -2.6363 0.0010 11 6 5.5518 -2.6362 0.0009 12 7 6.0401 -4.0174 0.0014 13 6 7.3653 -4.2635 0.0020 14 8 8.1533 -3.3417 0.0016 15 6 7.8677 -5.6843 0.0019 16 7 9.3327 -5.6842 0.0020 17 6 10.0302 -5.6842 1.2848 18 6 11.4802 -6.1326 1.0932 19 7 12.0772 -5.3474 0.0007 20 6 11.4696 -5.7221 -1.2832 21 6 9.9716 -5.6896 -1.1726 22 8 9.3144 -5.6626 -2.1916 23 1 -0.4851 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8752 -0.6801 -0.8889 26 1 3.6588 -3.1499 -0.8892 27 1 3.6581 -3.1503 0.8907 28 1 5.9150 -2.1224 0.8910 29 1 5.9150 -2.1223 -0.8890 30 1 5.4099 -4.7547 0.0021 31 1 7.5040 -6.1983 0.8917 32 1 7.5048 -6.1980 -0.8883 33 1 10.0151 -4.6784 1.7046 34 1 9.5278 -6.3675 1.9695 35 1 12.0397 -5.9632 2.0131 36 1 11.5047 -7.1925 0.8403 37 1 13.0789 -5.4667 -0.0247 38 1 11.7932 -5.0230 -2.0543 39 1 11.7858 -6.7298 -1.5527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705983451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:54 Heat of formation + Delta-G solvation = -99.868656 kcal Electronic energy + Delta-G solvation = -20255.774787 eV Core-core repulsion = 17003.888656 eV Total energy + Delta-G solvation = -3251.886131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.77255 -40.29513 -37.81818 -37.05173 -35.68163 -35.16333 -33.35648 -30.96975 -30.09699 -28.46105 -26.23078 -24.66557 -23.93376 -22.28015 -21.50771 -19.61602 -18.99281 -18.36684 -18.21220 -17.96879 -16.90302 -16.72311 -16.63827 -16.24584 -15.71544 -15.65230 -15.47724 -14.94647 -14.79252 -14.40317 -14.13751 -13.86835 -13.77627 -13.26110 -13.09177 -12.76257 -12.74160 -12.70554 -12.27534 -11.95683 -11.80205 -11.61947 -11.35329 -11.22116 -11.04229 -10.77799 -10.12143 -9.82561 -9.58045 -8.30889 -6.34734 1.35627 1.36000 1.36785 1.48720 1.59031 1.82797 2.34833 2.35847 3.04740 3.11218 3.47483 3.77100 3.85415 4.08081 4.08942 4.16685 4.21882 4.31086 4.34297 4.45716 4.47548 4.55352 4.79618 4.85695 4.88038 4.97768 5.01923 5.19397 5.36788 5.48021 5.53420 5.63408 5.71412 6.25904 6.28335 6.36394 6.53427 6.73219 6.99687 7.22868 7.30186 8.85511 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042053 B = 0.002980 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.672714 B = 9393.062021 C = 9503.597994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.531 4.531 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.129 3.871 12 N -0.715 5.715 13 C 0.489 3.511 14 O -0.582 6.582 15 C 0.092 3.908 16 N -0.584 5.584 17 C 0.108 3.892 18 C 0.042 3.958 19 N -0.695 5.695 20 C 0.052 3.948 21 C 0.511 3.489 22 O -0.597 6.597 23 H 0.267 0.733 24 H 0.022 0.978 25 H 0.015 0.985 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.417 0.583 31 H 0.156 0.844 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.061 0.939 37 H 0.370 0.630 38 H 0.107 0.893 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.455 -18.020 4.852 32.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.058 0.942 9 C -0.051 4.051 10 C -0.137 4.137 11 C 0.004 3.996 12 N -0.368 5.368 13 C 0.275 3.725 14 O -0.461 6.461 15 C -0.034 4.034 16 N -0.315 5.315 17 C -0.014 4.014 18 C -0.087 4.087 19 N -0.331 5.331 20 C -0.080 4.080 21 C 0.300 3.700 22 O -0.478 6.478 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.254 0.746 31 H 0.173 0.827 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.191 0.809 38 H 0.125 0.875 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 26.163 -16.704 4.450 31.358 hybrid contribution -0.368 0.055 -0.412 0.555 sum 25.795 -16.648 4.038 30.965 Atomic orbital electron populations 1.70049 1.08157 1.28161 1.52659 1.25967 0.95590 1.03368 0.94213 0.85711 0.79521 0.78647 0.79111 1.19466 1.20782 1.17241 1.21457 0.91798 0.93338 1.50268 0.94250 1.19469 0.94187 0.94733 0.96662 1.21476 0.91774 0.98118 1.02312 1.21250 0.94519 0.82917 1.00884 1.45958 1.07033 1.09298 1.74535 1.21849 0.82290 0.93183 0.75173 1.90690 1.56438 1.47889 1.51129 1.21542 0.81683 0.92292 1.07927 1.47171 1.05698 1.71257 1.07345 1.21907 0.93369 1.02706 0.83461 1.22414 0.93695 0.96016 0.96580 1.60709 1.11033 1.59053 1.02267 1.21975 0.88202 1.03251 0.94565 1.20856 0.92018 0.74431 0.82688 1.90715 1.68219 1.52568 1.36291 0.92456 0.96003 0.96646 0.91906 0.91145 0.92341 0.93515 0.74630 0.82666 0.86640 0.92596 0.86741 0.85985 0.92097 0.80908 0.87466 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 2 C 0.01 0.33 5.47 84.65 0.46 0.79 16 3 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -11.15 6.54 99.48 0.65 -10.49 16 7 C -0.53 -30.53 9.66 25.60 0.25 -30.28 16 8 H 0.04 2.45 7.99 -2.91 -0.02 2.42 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.66 5.27 30.60 0.16 -3.50 16 11 C 0.13 4.30 5.67 86.38 0.49 4.79 16 12 N -0.72 -19.01 5.56 -463.06 -2.57 -21.58 16 13 C 0.49 13.96 7.89 87.66 0.69 14.66 16 14 O -0.58 -22.37 16.43 -3.03 -0.05 -22.42 16 15 C 0.09 1.75 5.75 85.63 0.49 2.24 16 16 N -0.58 -11.76 2.32 -829.59 -1.92 -13.68 16 17 C 0.11 1.36 6.62 86.46 0.57 1.94 16 18 C 0.04 0.32 6.62 86.24 0.57 0.89 16 19 N -0.69 -8.28 6.93 -518.05 -3.59 -11.87 16 20 C 0.05 0.82 6.68 85.41 0.57 1.39 16 21 C 0.51 12.58 7.55 87.68 0.66 13.24 16 22 O -0.60 -20.02 16.33 -3.04 -0.05 -20.07 16 23 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 25 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.42 8.16 8.47 -92.71 -0.79 7.37 16 31 H 0.16 1.40 7.92 -2.39 -0.02 1.39 16 32 H 0.12 2.26 7.25 -2.39 -0.02 2.24 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 0.64 7.98 -2.39 -0.02 0.62 16 35 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.06 0.29 8.08 -2.39 -0.02 0.27 16 37 H 0.37 2.20 8.90 -89.69 -0.80 1.41 16 38 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -84.72 325.78 -1.53 -86.26 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -0.58 Total: 10.14 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 5.04 Total: 5.70 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -7.78 Total: -106.66 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.10 Total: -42.49 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -84.72 -1.53 -86.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705983451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.612 kcal (2) G-P(sol) polarization free energy of solvation -84.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds