Wall clock time and date at job start Mon Mar 30 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.08998 * 109.46959 * 54.27569 * 3 2 1 5 5 C 1.50696 * 109.47084 * 174.27299 * 3 2 1 6 6 H 1.08002 * 120.00148 * 114.30700 * 5 3 2 7 7 C 1.37879 * 120.00311 * 294.30919 * 5 3 2 8 8 N 1.31518 * 120.00121 * 153.95432 * 7 5 3 9 9 Si 1.86798 * 119.99881 * 333.95009 * 7 5 3 10 10 H 1.48494 * 109.47229 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47282 * 300.00464 * 9 7 5 12 12 H 1.48504 * 109.46791 * 60.00284 * 9 7 5 13 13 N 1.46500 * 109.47386 * 294.27869 * 3 2 1 14 14 C 1.34767 * 120.00017 * 84.99764 * 13 3 2 15 15 O 1.21276 * 120.00461 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99899 * 180.02562 * 14 13 3 17 17 N 1.46503 * 109.47185 * 180.02562 * 16 14 13 18 18 C 1.46005 * 118.53528 * 89.99967 * 17 16 14 19 19 C 1.52988 * 110.04165 * 161.81556 * 18 17 16 20 20 N 1.47191 * 108.72745 * 50.28838 * 19 18 17 21 21 C 1.46898 * 110.17935 * 291.00390 * 20 19 18 22 22 C 1.33711 * 118.53232 * 269.73083 * 17 16 14 23 23 O 1.21286 * 118.62705 * 1.70889 * 22 17 16 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 28 28 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 29 29 H 0.97002 * 119.99919 * 354.95953 * 8 7 5 30 30 H 0.97000 * 119.99178 * 265.00145 * 13 3 2 31 31 H 1.08999 * 109.46987 * 300.00193 * 16 14 13 32 32 H 1.08997 * 109.47508 * 59.99821 * 16 14 13 33 33 H 1.09000 * 109.37759 * 281.98639 * 18 17 16 34 34 H 1.09000 * 109.37744 * 41.64229 * 18 17 16 35 35 H 1.08993 * 109.59642 * 170.06075 * 19 18 17 36 36 H 1.09000 * 109.59048 * 290.36666 * 19 18 17 37 37 H 1.00902 * 110.99635 * 167.63351 * 20 19 18 38 38 H 1.08994 * 109.39162 * 170.45187 * 21 20 19 39 39 H 1.09003 * 109.38152 * 290.24709 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9851 0.8343 5 6 3.5402 1.4451 0.1418 6 1 4.1586 1.8024 -0.6684 7 6 4.1235 0.9911 1.3057 8 7 5.3468 0.5087 1.2836 9 14 3.1762 1.0614 2.9142 10 1 4.0187 0.5168 4.0090 11 1 2.8196 2.4706 3.2175 12 1 1.9370 0.2519 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4514 2.6586 -1.3910 15 8 -0.3344 2.6299 -0.4677 16 6 0.0679 3.3264 -2.6864 17 7 -1.2921 3.8601 -2.5767 18 6 -1.4684 5.2257 -2.0909 19 6 -2.8587 5.7409 -2.4679 20 7 -3.8599 4.7436 -2.0561 21 6 -3.7455 3.5377 -2.8870 22 6 -2.3161 3.0768 -2.9311 23 8 -2.0818 1.9452 -3.2994 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8117 0.4042 0.4386 30 1 2.2956 2.1148 -1.9976 31 1 0.7617 4.1409 -2.8946 32 1 0.1086 2.5984 -3.4966 33 1 -1.3590 5.2407 -1.0065 34 1 -0.7108 5.8692 -2.5381 35 1 -3.0502 6.6840 -1.9562 36 1 -2.9124 5.8924 -3.5460 37 1 -4.7921 5.1271 -2.1017 38 1 -4.3697 2.7487 -2.4677 39 1 -4.0792 3.7632 -3.8999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705983641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:04 Heat of formation + Delta-G solvation = -62.185411 kcal Electronic energy + Delta-G solvation = -21595.322142 eV Core-core repulsion = 18345.070079 eV Total energy + Delta-G solvation = -3250.252063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60153 -38.79221 -36.82712 -35.38911 -34.45090 -32.42754 -31.43508 -30.04021 -28.52013 -26.91243 -25.16893 -23.30303 -22.28861 -20.72810 -19.46114 -18.64818 -17.82465 -17.26196 -16.92637 -16.65640 -15.55037 -15.43389 -14.97052 -14.78041 -14.51682 -13.91481 -13.48621 -13.35538 -12.95725 -12.72999 -12.51165 -12.36693 -12.35591 -11.92611 -11.85784 -11.65955 -11.28456 -10.74107 -10.62661 -10.37362 -9.92616 -9.82003 -9.72503 -9.45484 -9.14400 -8.94464 -8.51070 -8.22335 -8.00570 -6.58467 -4.17194 2.55655 2.88218 3.30981 3.44262 3.48266 3.64384 3.75175 4.12673 4.36825 4.47010 4.55780 4.80545 4.97455 5.04713 5.10774 5.19439 5.29274 5.36511 5.47631 5.54486 5.79215 6.17506 6.19259 6.21521 6.39507 6.41769 6.80074 6.85472 6.90513 7.05368 7.17610 7.38032 7.44998 7.49436 7.73251 8.12969 8.27216 8.54976 8.74670 9.05612 9.47319 10.79176 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031412 B = 0.004890 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.173036 B = 5724.475073 C = 5808.800644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.253 3.747 4 H 0.039 0.961 5 C -0.628 4.628 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.887 5.887 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.487 3.513 15 O -0.538 6.538 16 C 0.087 3.913 17 N -0.580 5.580 18 C 0.116 3.884 19 C 0.041 3.959 20 N -0.679 5.679 21 C 0.047 3.953 22 C 0.524 3.476 23 O -0.547 6.547 24 H 0.028 0.972 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.351 0.649 38 H 0.113 0.887 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.342 11.234 -10.058 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.149 3.851 4 H 0.056 0.944 5 C -0.665 4.665 6 H 0.080 0.920 7 C -0.159 4.159 8 N -0.519 5.519 9 Si 0.857 3.143 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.270 3.730 15 O -0.416 6.416 16 C -0.040 4.040 17 N -0.312 5.312 18 C -0.007 4.007 19 C -0.089 4.089 20 N -0.312 5.312 21 C -0.085 4.085 22 C 0.312 3.688 23 O -0.424 6.424 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.060 0.940 37 H 0.170 0.830 38 H 0.131 0.869 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.252 10.066 -7.427 19.726 hybrid contribution -0.098 0.676 -2.811 2.893 sum -15.350 10.742 -10.238 21.350 Atomic orbital electron populations 1.21877 0.97262 0.98820 1.02056 1.22216 0.93768 0.99720 1.01197 1.18977 0.95592 0.88475 0.82046 0.94357 1.21987 0.89780 1.49971 1.04784 0.91976 1.25591 0.96591 0.91653 1.02080 1.70876 1.13941 1.36537 1.30531 0.84223 0.76080 0.77588 0.76458 1.20879 1.20744 1.19929 1.46230 1.14499 1.56237 1.18138 1.20791 0.82815 0.79796 0.89575 1.90671 1.50362 1.59428 1.41117 1.21444 0.83881 1.00499 0.98144 1.46883 1.05640 1.14420 1.64256 1.21579 0.96408 0.81520 1.01184 1.22321 0.91921 0.95722 0.98955 1.60738 1.08828 1.06140 1.55529 1.22061 0.94280 0.94838 0.97291 1.19987 0.87076 0.85096 0.76645 1.90744 1.84767 1.18637 1.48228 0.95281 0.93293 0.92911 0.93253 0.92053 0.91903 0.77597 0.88035 0.87278 0.90117 0.90364 0.88530 0.94016 0.83000 0.86862 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.53 37.16 0.32 -2.90 16 2 C -0.13 -3.10 5.37 -26.73 -0.14 -3.24 16 3 C 0.25 6.20 1.84 -69.08 -0.13 6.08 16 4 H 0.04 1.03 6.12 -51.93 -0.32 0.71 16 5 C -0.63 -17.10 8.92 -34.44 -0.31 -17.41 16 6 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 7 C 0.05 1.39 5.15 -17.82 -0.09 1.30 16 8 N -0.89 -26.39 13.70 55.43 0.76 -25.63 16 9 Si 1.03 25.49 26.56 -169.99 -4.51 20.97 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.53 6.34 56.52 0.36 -6.17 16 13 N -0.70 -14.46 5.03 -54.93 -0.28 -14.74 16 14 C 0.49 9.50 6.49 -10.99 -0.07 9.42 16 15 O -0.54 -12.34 13.57 5.56 0.08 -12.26 16 16 C 0.09 1.27 5.75 -5.19 -0.03 1.24 16 17 N -0.58 -8.08 2.32 -175.96 -0.41 -8.48 16 18 C 0.12 1.22 6.62 -4.32 -0.03 1.19 16 19 C 0.04 0.31 6.62 -3.67 -0.02 0.28 16 20 N -0.68 -6.16 6.93 -115.09 -0.80 -6.96 16 21 C 0.05 0.50 6.68 -5.19 -0.03 0.47 16 22 C 0.52 7.96 7.55 -11.68 -0.09 7.87 16 23 O -0.55 -10.42 16.33 5.55 0.09 -10.33 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 1.14 7.89 -51.93 -0.41 0.73 16 26 H 0.05 1.23 5.63 -51.93 -0.29 0.94 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.52 5.77 -51.93 -0.30 1.22 16 29 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 30 H 0.39 7.10 8.53 -40.82 -0.35 6.76 16 31 H 0.10 1.11 7.92 -51.93 -0.41 0.70 16 32 H 0.11 1.59 7.25 -51.93 -0.38 1.21 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.61 7.98 -51.93 -0.41 0.20 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 37 H 0.35 2.11 8.90 -39.29 -0.35 1.77 16 38 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -35.23 314.12 -6.75 -41.98 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.79 Total: 6.41 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -0.63 Total: 4.30 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.72 Total: -55.81 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.17 Total: -22.59 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.51 Total: 20.97 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.23 -6.75 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705983641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.205 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds