Wall clock time and date at job start Mon Mar 30 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.08998 * 109.46959 * 54.27569 * 3 2 1 5 5 C 1.50696 * 109.47084 * 174.27299 * 3 2 1 6 6 H 1.08002 * 120.00148 * 114.30700 * 5 3 2 7 7 C 1.37879 * 120.00311 * 294.30919 * 5 3 2 8 8 N 1.31518 * 120.00121 * 153.95432 * 7 5 3 9 9 Si 1.86798 * 119.99881 * 333.95009 * 7 5 3 10 10 H 1.48494 * 109.47229 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47282 * 300.00464 * 9 7 5 12 12 H 1.48504 * 109.46791 * 60.00284 * 9 7 5 13 13 N 1.46500 * 109.47386 * 294.27869 * 3 2 1 14 14 C 1.34767 * 120.00017 * 84.99764 * 13 3 2 15 15 O 1.21276 * 120.00461 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99899 * 180.02562 * 14 13 3 17 17 N 1.46503 * 109.47185 * 180.02562 * 16 14 13 18 18 C 1.46005 * 118.53528 * 89.99967 * 17 16 14 19 19 C 1.52988 * 110.04165 * 161.81556 * 18 17 16 20 20 N 1.47191 * 108.72745 * 50.28838 * 19 18 17 21 21 C 1.46898 * 110.17935 * 291.00390 * 20 19 18 22 22 C 1.33711 * 118.53232 * 269.73083 * 17 16 14 23 23 O 1.21286 * 118.62705 * 1.70889 * 22 17 16 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 28 28 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 29 29 H 0.97002 * 119.99919 * 354.95953 * 8 7 5 30 30 H 0.97000 * 119.99178 * 265.00145 * 13 3 2 31 31 H 1.08999 * 109.46987 * 300.00193 * 16 14 13 32 32 H 1.08997 * 109.47508 * 59.99821 * 16 14 13 33 33 H 1.09000 * 109.37759 * 281.98639 * 18 17 16 34 34 H 1.09000 * 109.37744 * 41.64229 * 18 17 16 35 35 H 1.08993 * 109.59642 * 170.06075 * 19 18 17 36 36 H 1.09000 * 109.59048 * 290.36666 * 19 18 17 37 37 H 1.00902 * 110.99635 * 167.63351 * 20 19 18 38 38 H 1.08994 * 109.39162 * 170.45187 * 21 20 19 39 39 H 1.09003 * 109.38152 * 290.24709 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9851 0.8343 5 6 3.5402 1.4451 0.1418 6 1 4.1586 1.8024 -0.6684 7 6 4.1235 0.9911 1.3057 8 7 5.3468 0.5087 1.2836 9 14 3.1762 1.0614 2.9142 10 1 4.0187 0.5168 4.0090 11 1 2.8196 2.4706 3.2175 12 1 1.9370 0.2519 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4514 2.6586 -1.3910 15 8 -0.3344 2.6299 -0.4677 16 6 0.0679 3.3264 -2.6864 17 7 -1.2921 3.8601 -2.5767 18 6 -1.4684 5.2257 -2.0909 19 6 -2.8587 5.7409 -2.4679 20 7 -3.8599 4.7436 -2.0561 21 6 -3.7455 3.5377 -2.8870 22 6 -2.3161 3.0768 -2.9311 23 8 -2.0818 1.9452 -3.2994 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8117 0.4042 0.4386 30 1 2.2956 2.1148 -1.9976 31 1 0.7617 4.1409 -2.8946 32 1 0.1086 2.5984 -3.4966 33 1 -1.3590 5.2407 -1.0065 34 1 -0.7108 5.8692 -2.5381 35 1 -3.0502 6.6840 -1.9562 36 1 -2.9124 5.8924 -3.5460 37 1 -4.7921 5.1271 -2.1017 38 1 -4.3697 2.7487 -2.4677 39 1 -4.0792 3.7632 -3.8999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705983641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:04 Heat of formation + Delta-G solvation = -91.381003 kcal Electronic energy + Delta-G solvation = -21596.588158 eV Core-core repulsion = 18345.070079 eV Total energy + Delta-G solvation = -3251.518079 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.74134 -40.34206 -37.79621 -37.10985 -35.60342 -34.48273 -33.24123 -30.90259 -29.90479 -28.62494 -26.16163 -24.43020 -24.04426 -22.37729 -21.25327 -20.02686 -19.40867 -18.24712 -18.13426 -17.94032 -17.10994 -16.61066 -16.29445 -15.89786 -15.63941 -15.50614 -15.02864 -14.57248 -14.46707 -14.34740 -14.25653 -14.08649 -13.66358 -13.22719 -12.98030 -12.73927 -12.68320 -12.54090 -12.35301 -12.23233 -11.79298 -11.63269 -11.24647 -11.09446 -10.94003 -10.41910 -9.80214 -9.76613 -9.56275 -8.81648 -6.41068 1.42200 1.45907 1.46561 1.68587 1.78173 1.88259 2.41219 2.62128 2.91820 3.12537 3.49267 3.85184 3.92644 4.09590 4.21482 4.25481 4.30910 4.34108 4.34625 4.45878 4.50957 4.56797 4.79729 4.82801 4.98550 5.02122 5.14968 5.20533 5.27347 5.49450 5.68381 5.69615 5.72783 6.02608 6.33264 6.39444 6.54835 6.85103 7.04923 7.26649 7.47239 8.54735 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031412 B = 0.004890 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.173036 B = 5724.475073 C = 5808.800644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.127 4.127 3 C 0.258 3.742 4 H 0.019 0.981 5 C -0.625 4.625 6 H 0.045 0.955 7 C 0.009 3.991 8 N -0.915 5.915 9 Si 1.062 2.938 10 H -0.279 1.279 11 H -0.272 1.272 12 H -0.262 1.262 13 N -0.704 5.704 14 C 0.484 3.516 15 O -0.574 6.574 16 C 0.093 3.907 17 N -0.581 5.581 18 C 0.107 3.893 19 C 0.045 3.955 20 N -0.694 5.694 21 C 0.054 3.946 22 C 0.510 3.490 23 O -0.597 6.597 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.262 0.738 30 H 0.403 0.597 31 H 0.144 0.856 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.061 0.939 37 H 0.370 0.630 38 H 0.108 0.892 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.044 12.927 -10.846 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.153 3.847 4 H 0.037 0.963 5 C -0.662 4.662 6 H 0.063 0.937 7 C -0.194 4.194 8 N -0.548 5.548 9 Si 0.884 3.116 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.187 1.187 13 N -0.354 5.354 14 C 0.270 3.730 15 O -0.454 6.454 16 C -0.034 4.034 17 N -0.311 5.311 18 C -0.015 4.015 19 C -0.084 4.084 20 N -0.330 5.330 21 C -0.077 4.077 22 C 0.300 3.700 23 O -0.478 6.478 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.238 0.762 31 H 0.162 0.838 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.079 0.921 37 H 0.191 0.809 38 H 0.126 0.874 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.973 11.817 -8.240 22.263 hybrid contribution 0.447 0.200 -2.608 2.653 sum -16.526 12.017 -10.848 23.134 Atomic orbital electron populations 1.21708 0.96047 0.99855 1.00937 1.22128 0.94685 0.99009 1.00748 1.18644 0.93580 0.89062 0.83401 0.96296 1.22133 0.91223 1.48786 1.04056 0.93673 1.26602 0.96709 0.91255 1.04866 1.70962 1.15007 1.38745 1.30085 0.83780 0.75634 0.78317 0.73828 1.20417 1.19744 1.18689 1.46081 1.15619 1.56439 1.17231 1.21664 0.81606 0.78833 0.90912 1.90649 1.51178 1.60608 1.42948 1.21458 0.85488 1.01668 0.94741 1.47126 1.05035 1.15574 1.63402 1.21887 0.99603 0.80244 0.99779 1.22388 0.89601 0.95930 1.00466 1.60682 1.10484 1.06209 1.55602 1.21964 0.91040 0.95551 0.99186 1.20878 0.88944 0.84566 0.75641 1.90710 1.85742 1.20769 1.50536 0.93119 0.94420 0.93920 0.93085 0.93082 0.92829 0.76225 0.83843 0.87166 0.92794 0.87244 0.85921 0.92050 0.80851 0.87390 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.53 71.98 0.61 -5.08 16 2 C -0.13 -5.99 5.37 30.60 0.16 -5.83 16 3 C 0.26 12.66 1.84 44.25 0.08 12.74 16 4 H 0.02 1.02 6.12 -2.39 -0.01 1.01 16 5 C -0.62 -34.24 8.92 25.60 0.23 -34.01 16 6 H 0.05 2.58 7.96 -2.91 -0.02 2.56 16 7 C 0.01 0.51 5.15 84.65 0.44 0.94 16 8 N -0.91 -55.03 13.70 21.45 0.29 -54.74 16 9 Si 1.06 51.34 26.56 68.60 1.82 53.16 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.26 -12.10 6.34 99.48 0.63 -11.47 16 13 N -0.70 -28.66 5.03 -446.11 -2.24 -30.90 16 14 C 0.48 18.54 6.49 87.66 0.57 19.11 16 15 O -0.57 -26.25 13.57 -3.02 -0.04 -26.29 16 16 C 0.09 2.55 5.75 85.63 0.49 3.04 16 17 N -0.58 -15.10 2.32 -829.59 -1.92 -17.02 16 18 C 0.11 1.95 6.62 86.47 0.57 2.53 16 19 C 0.05 0.52 6.62 86.24 0.57 1.09 16 20 N -0.69 -10.65 6.93 -518.04 -3.59 -14.24 16 21 C 0.05 1.05 6.68 85.42 0.57 1.62 16 22 C 0.51 14.89 7.55 87.68 0.66 15.55 16 23 O -0.60 -22.68 16.33 -3.05 -0.05 -22.73 16 24 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.04 1.73 7.89 -2.39 -0.02 1.71 16 26 H 0.04 1.97 5.63 -2.39 -0.01 1.95 16 27 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.05 2.50 5.77 -2.39 -0.01 2.48 16 29 H 0.26 15.74 8.73 -92.71 -0.81 14.93 16 30 H 0.40 14.38 8.53 -92.71 -0.79 13.59 16 31 H 0.14 2.67 7.92 -2.39 -0.02 2.66 16 32 H 0.11 3.06 7.25 -2.39 -0.02 3.04 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.29 7.98 -2.39 -0.02 1.27 16 35 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.52 8.08 -2.39 -0.02 0.50 16 37 H 0.37 3.26 8.90 -89.69 -0.80 2.46 16 38 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -77.63 314.12 -1.39 -79.02 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -0.63 Total: 22.04 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 4.96 Total: 11.70 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -7.46 Total: -116.90 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.09 Total: -49.02 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 1.82 Total: 53.16 kcal Total: -77.63 -1.39 -79.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705983641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.360 kcal (2) G-P(sol) polarization free energy of solvation -77.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds