Wall clock time and date at job start Mon Mar 30 2020 05:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99863 * 2 1 4 4 C 1.50703 * 109.54263 * 293.76992 * 3 2 1 5 5 O 1.21297 * 119.99576 * 115.80414 * 4 3 2 6 6 N 1.34772 * 120.00006 * 295.80523 * 4 3 2 7 7 C 1.37104 * 119.99761 * 184.61020 * 6 4 3 8 8 H 1.08003 * 119.99746 * 334.86616 * 7 6 4 9 9 C 1.38944 * 120.00005 * 154.87154 * 7 6 4 10 10 N 1.31418 * 119.99912 * 350.66864 * 9 7 6 11 11 Si 1.86798 * 120.00222 * 170.94313 * 9 7 6 12 12 H 1.48507 * 109.47492 * 179.72231 * 11 9 7 13 13 H 1.48501 * 109.47456 * 299.72693 * 11 9 7 14 14 H 1.48503 * 109.46909 * 59.72561 * 11 9 7 15 15 C 1.46499 * 120.00181 * 4.60175 * 6 4 3 16 16 C 1.53002 * 117.49753 * 136.52912 * 15 6 4 17 17 C 1.52994 * 60.00248 * 252.51581 * 16 15 6 18 18 C 1.53176 * 109.54333 * 53.94668 * 3 2 1 19 19 C 1.53282 * 109.06543 * 176.85450 * 18 3 2 20 20 O 1.42901 * 109.45839 * 302.44370 * 19 18 3 21 21 C 1.42905 * 114.09502 * 61.16010 * 20 19 18 22 22 C 1.53090 * 109.41804 * 298.83736 * 21 20 19 23 23 H 1.08998 * 109.46536 * 183.47715 * 1 2 3 24 24 H 1.09006 * 109.46642 * 303.47056 * 1 2 3 25 25 H 1.08994 * 109.47490 * 63.47770 * 1 2 3 26 26 H 0.97006 * 119.99722 * 175.04443 * 10 9 7 27 27 H 1.08998 * 115.55079 * 282.24356 * 15 6 4 28 28 H 1.09008 * 117.49819 * 0.02562 * 16 15 6 29 29 H 1.09000 * 117.49901 * 145.02443 * 16 15 6 30 30 H 1.09003 * 117.50163 * 252.51331 * 17 16 15 31 31 H 1.09004 * 117.50010 * 107.48700 * 17 16 15 32 32 H 1.09007 * 109.52426 * 296.84113 * 18 3 2 33 33 H 1.08995 * 109.52576 * 57.02929 * 18 3 2 34 34 H 1.09005 * 109.45818 * 182.44748 * 19 18 3 35 35 H 1.08994 * 109.46917 * 62.44689 * 19 18 3 36 36 H 1.09005 * 109.47934 * 178.85595 * 21 20 19 37 37 H 1.08997 * 109.48948 * 58.82966 * 21 20 19 38 38 H 1.08997 * 109.52146 * 297.71218 * 22 21 20 39 39 H 1.08994 * 109.58235 * 177.54702 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6923 1.9989 -1.2997 5 8 1.0053 2.9985 -1.3015 6 7 2.1713 1.5082 -2.4600 7 6 1.9620 2.1900 -3.6309 8 1 1.1185 2.8580 -3.7234 9 6 2.8351 2.0214 -4.6986 10 7 3.9569 1.3575 -4.5315 11 14 2.4181 2.7450 -6.3695 12 1 3.5071 2.4332 -7.3298 13 1 1.1441 2.1594 -6.8586 14 1 2.2715 4.2178 -6.2484 15 6 2.9158 0.2465 -2.4700 16 6 2.5933 -0.7552 -3.5806 17 6 2.1420 -1.0328 -2.1454 18 6 1.4425 2.1191 1.1670 19 6 2.1303 3.4885 1.2041 20 8 3.5428 3.3087 1.3240 21 6 4.1344 2.5944 0.2368 22 6 3.5292 1.1902 0.1610 23 1 -0.3632 -1.0258 0.0623 24 1 -0.3633 0.5668 0.8573 25 1 -0.3634 0.4589 -0.9194 26 1 4.5319 1.1777 -5.2918 27 1 3.9503 0.3084 -2.1323 28 1 1.8275 -0.4753 -4.3041 29 1 3.4159 -1.3525 -3.9740 30 1 2.6676 -1.8128 -1.5944 31 1 1.0790 -0.9357 -1.9243 32 1 0.3692 2.2519 1.0305 33 1 1.6292 1.5927 2.1030 34 1 1.7623 4.0567 2.0585 35 1 1.9097 4.0308 0.2847 36 1 5.2103 2.5184 0.3944 37 1 3.9401 3.1248 -0.6954 38 1 3.7579 0.6451 1.0767 39 1 3.9467 0.6581 -0.6937 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706742562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:29 Heat of formation + Delta-G solvation = -69.293210 kcal Electronic energy + Delta-G solvation = -23336.816524 eV Core-core repulsion = 20053.963492 eV Total energy + Delta-G solvation = -3282.853032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39393 -37.74285 -36.74974 -36.04902 -32.90643 -32.09558 -31.26816 -30.43700 -26.70320 -25.53019 -23.94035 -23.01758 -22.02476 -21.18887 -20.71881 -18.21788 -16.97815 -16.96990 -16.01361 -15.58410 -15.20048 -14.96935 -14.74536 -14.33865 -14.06989 -13.94121 -13.46476 -13.09065 -12.83489 -12.54548 -12.16300 -11.84291 -11.71543 -11.35956 -11.16814 -11.00166 -10.80255 -10.49044 -10.46867 -10.40246 -10.34835 -10.05172 -9.69348 -9.51528 -9.29592 -9.00912 -8.66588 -8.08624 -7.70207 -6.30021 -3.92698 3.14759 3.22452 3.25666 3.60484 4.07958 4.21179 4.33035 4.70582 4.92464 5.10542 5.13212 5.27740 5.41128 5.50910 5.66739 5.72427 5.73910 5.84822 5.92444 5.98395 6.04155 6.06303 6.16727 6.18724 6.31045 6.32373 6.42552 6.51427 6.58015 6.59945 6.87804 7.11779 7.21392 7.51389 7.53529 7.63048 8.09443 8.45145 9.13103 9.38521 9.92378 10.71035 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021198 B = 0.008681 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.546645 B = 3224.663466 C = 3629.544602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.112 3.888 4 C 0.434 3.566 5 O -0.585 6.585 6 N -0.403 5.403 7 C -0.315 4.315 8 H 0.095 0.905 9 C 0.042 3.958 10 N -0.864 5.864 11 Si 0.919 3.081 12 H -0.284 1.284 13 H -0.275 1.275 14 H -0.273 1.273 15 C 0.125 3.875 16 C -0.142 4.142 17 C -0.191 4.191 18 C -0.158 4.158 19 C 0.057 3.943 20 O -0.390 6.390 21 C 0.065 3.935 22 C -0.153 4.153 23 H 0.081 0.919 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.267 0.733 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -4.081 7.014 8.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.278 6.278 3 C 0.070 3.930 4 C 0.222 3.778 5 O -0.471 6.471 6 N -0.121 5.121 7 C -0.443 4.443 8 H 0.113 0.887 9 C -0.163 4.163 10 N -0.501 5.501 11 Si 0.745 3.255 12 H -0.209 1.209 13 H -0.201 1.201 14 H -0.198 1.198 15 C 0.020 3.980 16 C -0.180 4.180 17 C -0.230 4.230 18 C -0.196 4.196 19 C -0.020 4.020 20 O -0.309 6.309 21 C -0.012 4.012 22 C -0.191 4.191 23 H 0.099 0.901 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.967 -3.696 7.028 8.000 hybrid contribution -0.467 0.223 -1.233 1.337 sum -1.434 -3.472 5.795 6.907 Atomic orbital electron populations 1.22701 0.82116 1.01770 1.00496 1.88045 1.19002 1.26034 1.94734 1.21646 0.94424 0.83568 0.93382 1.20429 0.86023 0.86414 0.84961 1.90476 1.42176 1.28044 1.86385 1.43091 1.46262 1.17184 1.05548 1.19547 1.10320 1.24666 0.89766 0.88695 1.25224 0.94015 0.97101 0.99954 1.69950 1.09770 1.39193 1.31200 0.86125 0.77957 0.79757 0.81637 1.20899 1.20057 1.19836 1.21049 0.93881 0.80203 1.02890 1.22748 1.02043 1.01772 0.91405 1.23491 1.00830 0.99904 0.98727 1.22517 1.01637 0.97679 0.97786 1.22753 0.80239 0.95707 1.03278 1.87808 1.21486 1.76190 1.45456 1.22528 0.97293 0.90763 0.90618 1.22492 0.92847 0.99129 1.04591 0.90073 0.93962 0.93835 0.92219 0.87866 0.89614 0.90136 0.89928 0.89441 0.90224 0.91041 0.89687 0.90181 0.88741 0.92153 0.90672 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 8.93 101.05 0.90 1.31 16 2 O -0.36 -6.49 6.83 -35.23 -0.24 -6.73 16 3 C 0.11 2.17 0.45 -91.59 -0.04 2.13 16 4 C 0.43 10.24 4.16 -10.99 -0.05 10.19 16 5 O -0.59 -15.38 13.72 5.54 0.08 -15.30 16 6 N -0.40 -9.95 2.92 -107.73 -0.31 -10.27 16 7 C -0.32 -8.51 8.85 -14.93 -0.13 -8.64 16 8 H 0.10 2.71 7.41 -52.48 -0.39 2.33 16 9 C 0.04 1.08 4.52 -17.47 -0.08 1.00 16 10 N -0.86 -21.84 10.28 55.50 0.57 -21.27 16 11 Si 0.92 20.36 29.57 -169.99 -5.03 15.34 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.12 2.73 2.32 -67.93 -0.16 2.57 16 16 C -0.14 -2.96 8.06 -26.73 -0.22 -3.18 16 17 C -0.19 -3.63 7.83 -26.73 -0.21 -3.84 16 18 C -0.16 -2.77 4.04 -26.49 -0.11 -2.88 16 19 C 0.06 1.02 6.56 37.30 0.24 1.27 16 20 O -0.39 -7.23 10.77 -35.23 -0.38 -7.61 16 21 C 0.06 1.18 6.62 37.20 0.25 1.43 16 22 C -0.15 -2.76 5.07 -26.59 -0.13 -2.89 16 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.04 0.62 6.21 -51.93 -0.32 0.29 16 25 H 0.04 0.80 7.35 -51.93 -0.38 0.42 16 26 H 0.27 6.49 8.32 -40.82 -0.34 6.15 16 27 H 0.10 2.30 5.95 -51.93 -0.31 1.99 16 28 H 0.09 1.95 7.58 -51.92 -0.39 1.56 16 29 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.09 1.70 5.84 -51.93 -0.30 1.39 16 32 H 0.08 1.39 6.43 -51.92 -0.33 1.06 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.68 5.97 -51.93 -0.31 1.37 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.06 1.29 7.38 -51.93 -0.38 0.90 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.10 1.93 4.09 -51.93 -0.21 1.72 16 LS Contribution 292.32 15.07 4.41 4.41 Total: -1.00 -28.70 292.32 -6.07 -34.77 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.43 Total: 8.20 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 0.27 Total: -1.53 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.26 Total: -31.54 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.54 Total: -29.65 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.70 -6.07 -34.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706742562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.520 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds