Wall clock time and date at job start Mon Mar 30 2020 05:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99863 * 2 1 4 4 C 1.50703 * 109.54263 * 293.76992 * 3 2 1 5 5 O 1.21297 * 119.99576 * 115.80414 * 4 3 2 6 6 N 1.34772 * 120.00006 * 295.80523 * 4 3 2 7 7 C 1.37104 * 119.99761 * 184.61020 * 6 4 3 8 8 H 1.08003 * 119.99746 * 334.86616 * 7 6 4 9 9 C 1.38944 * 120.00005 * 154.87154 * 7 6 4 10 10 N 1.31418 * 119.99912 * 350.66864 * 9 7 6 11 11 Si 1.86798 * 120.00222 * 170.94313 * 9 7 6 12 12 H 1.48507 * 109.47492 * 179.72231 * 11 9 7 13 13 H 1.48501 * 109.47456 * 299.72693 * 11 9 7 14 14 H 1.48503 * 109.46909 * 59.72561 * 11 9 7 15 15 C 1.46499 * 120.00181 * 4.60175 * 6 4 3 16 16 C 1.53002 * 117.49753 * 136.52912 * 15 6 4 17 17 C 1.52994 * 60.00248 * 252.51581 * 16 15 6 18 18 C 1.53176 * 109.54333 * 53.94668 * 3 2 1 19 19 C 1.53282 * 109.06543 * 176.85450 * 18 3 2 20 20 O 1.42901 * 109.45839 * 302.44370 * 19 18 3 21 21 C 1.42905 * 114.09502 * 61.16010 * 20 19 18 22 22 C 1.53090 * 109.41804 * 298.83736 * 21 20 19 23 23 H 1.08998 * 109.46536 * 183.47715 * 1 2 3 24 24 H 1.09006 * 109.46642 * 303.47056 * 1 2 3 25 25 H 1.08994 * 109.47490 * 63.47770 * 1 2 3 26 26 H 0.97006 * 119.99722 * 175.04443 * 10 9 7 27 27 H 1.08998 * 115.55079 * 282.24356 * 15 6 4 28 28 H 1.09008 * 117.49819 * 0.02562 * 16 15 6 29 29 H 1.09000 * 117.49901 * 145.02443 * 16 15 6 30 30 H 1.09003 * 117.50163 * 252.51331 * 17 16 15 31 31 H 1.09004 * 117.50010 * 107.48700 * 17 16 15 32 32 H 1.09007 * 109.52426 * 296.84113 * 18 3 2 33 33 H 1.08995 * 109.52576 * 57.02929 * 18 3 2 34 34 H 1.09005 * 109.45818 * 182.44748 * 19 18 3 35 35 H 1.08994 * 109.46917 * 62.44689 * 19 18 3 36 36 H 1.09005 * 109.47934 * 178.85595 * 21 20 19 37 37 H 1.08997 * 109.48948 * 58.82966 * 21 20 19 38 38 H 1.08997 * 109.52146 * 297.71218 * 22 21 20 39 39 H 1.08994 * 109.58235 * 177.54702 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6923 1.9989 -1.2997 5 8 1.0053 2.9985 -1.3015 6 7 2.1713 1.5082 -2.4600 7 6 1.9620 2.1900 -3.6309 8 1 1.1185 2.8580 -3.7234 9 6 2.8351 2.0214 -4.6986 10 7 3.9569 1.3575 -4.5315 11 14 2.4181 2.7450 -6.3695 12 1 3.5071 2.4332 -7.3298 13 1 1.1441 2.1594 -6.8586 14 1 2.2715 4.2178 -6.2484 15 6 2.9158 0.2465 -2.4700 16 6 2.5933 -0.7552 -3.5806 17 6 2.1420 -1.0328 -2.1454 18 6 1.4425 2.1191 1.1670 19 6 2.1303 3.4885 1.2041 20 8 3.5428 3.3087 1.3240 21 6 4.1344 2.5944 0.2368 22 6 3.5292 1.1902 0.1610 23 1 -0.3632 -1.0258 0.0623 24 1 -0.3633 0.5668 0.8573 25 1 -0.3634 0.4589 -0.9194 26 1 4.5319 1.1777 -5.2918 27 1 3.9503 0.3084 -2.1323 28 1 1.8275 -0.4753 -4.3041 29 1 3.4159 -1.3525 -3.9740 30 1 2.6676 -1.8128 -1.5944 31 1 1.0790 -0.9357 -1.9243 32 1 0.3692 2.2519 1.0305 33 1 1.6292 1.5927 2.1030 34 1 1.7623 4.0567 2.0585 35 1 1.9097 4.0308 0.2847 36 1 5.2103 2.5184 0.3944 37 1 3.9401 3.1248 -0.6954 38 1 3.7579 0.6451 1.0767 39 1 3.9467 0.6581 -0.6937 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706742562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:29 Heat of formation + Delta-G solvation = -88.277310 kcal Electronic energy + Delta-G solvation = -23337.639736 eV Core-core repulsion = 20053.963492 eV Total energy + Delta-G solvation = -3283.676244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.99540 -39.36134 -38.23158 -37.85335 -34.77056 -33.64468 -33.00734 -31.96695 -28.09906 -27.35499 -25.50519 -24.49347 -23.68387 -22.82881 -22.38372 -19.90306 -18.84757 -18.47806 -17.60285 -17.07952 -16.97349 -16.66585 -16.27864 -15.89007 -15.68192 -15.53425 -15.06644 -14.62548 -14.49080 -14.05369 -13.81071 -13.56909 -13.21504 -12.97327 -12.90194 -12.59640 -12.33001 -12.24193 -12.13886 -12.06876 -11.95197 -11.60352 -11.34599 -11.05621 -10.98412 -10.53149 -10.41466 -9.85377 -9.61175 -8.25031 -5.95828 1.34464 1.38552 1.46469 1.86474 2.25200 2.72094 2.87525 2.97784 3.13755 3.35911 3.64038 3.77272 3.91020 3.99528 4.26362 4.29390 4.38810 4.42253 4.45031 4.51108 4.58756 4.63291 4.69468 4.77080 4.85117 4.87200 4.99140 5.02707 5.04901 5.13723 5.24175 5.43347 5.52669 5.53270 6.03050 6.13962 6.17735 6.53977 7.18152 7.49788 8.04116 8.73075 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021198 B = 0.008681 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.546645 B = 3224.663466 C = 3629.544602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.358 6.358 3 C 0.117 3.883 4 C 0.427 3.573 5 O -0.624 6.624 6 N -0.415 5.415 7 C -0.351 4.351 8 H 0.063 0.937 9 C 0.018 3.982 10 N -0.869 5.869 11 Si 0.971 3.029 12 H -0.268 1.268 13 H -0.273 1.273 14 H -0.281 1.281 15 C 0.108 3.892 16 C -0.146 4.146 17 C -0.156 4.156 18 C -0.153 4.153 19 C 0.056 3.944 20 O -0.389 6.389 21 C 0.067 3.933 22 C -0.149 4.149 23 H 0.116 0.884 24 H 0.058 0.942 25 H 0.010 0.990 26 H 0.272 0.728 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.040 0.960 36 H 0.124 0.876 37 H 0.017 0.983 38 H 0.105 0.895 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 -5.823 8.432 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.276 6.276 3 C 0.075 3.925 4 C 0.216 3.784 5 O -0.512 6.512 6 N -0.133 5.133 7 C -0.479 4.479 8 H 0.081 0.919 9 C -0.187 4.187 10 N -0.506 5.506 11 Si 0.796 3.204 12 H -0.193 1.193 13 H -0.198 1.198 14 H -0.207 1.207 15 C 0.004 3.996 16 C -0.184 4.184 17 C -0.194 4.194 18 C -0.191 4.191 19 C -0.021 4.021 20 O -0.308 6.308 21 C -0.010 4.010 22 C -0.186 4.186 23 H 0.134 0.866 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.132 0.868 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.135 0.865 35 H 0.059 0.941 36 H 0.142 0.858 37 H 0.035 0.965 38 H 0.123 0.877 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.324 -5.468 8.448 10.068 hybrid contribution -0.691 0.803 -1.667 1.975 sum -1.015 -4.665 6.781 8.293 Atomic orbital electron populations 1.22872 0.81000 1.03948 0.99510 1.88026 1.20128 1.24901 1.94540 1.21555 0.95658 0.84072 0.91245 1.21333 0.84654 0.86070 0.86296 1.90441 1.43667 1.29860 1.87253 1.43249 1.46617 1.18148 1.05244 1.19410 1.10495 1.26076 0.91902 0.91938 1.25761 0.93744 0.97121 1.02080 1.69998 1.09665 1.38888 1.32006 0.85340 0.78208 0.78434 0.78428 1.19272 1.19792 1.20713 1.21114 0.94012 0.79944 1.04574 1.22680 1.01947 1.01958 0.91823 1.23483 1.00533 0.98350 0.97060 1.22520 1.01231 0.97221 0.98150 1.22771 0.80299 0.96219 1.02775 1.87812 1.21662 1.76300 1.45030 1.22547 0.99101 0.90536 0.88840 1.22475 0.91570 0.98878 1.05656 0.86612 0.92361 0.97118 0.91764 0.88208 0.92131 0.88888 0.86768 0.89803 0.90551 0.88006 0.86482 0.94131 0.85778 0.96465 0.87660 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 8.93 113.37 1.01 1.69 16 2 O -0.36 -12.03 6.83 -148.98 -1.02 -13.04 16 3 C 0.12 4.40 0.45 -11.42 -0.01 4.39 16 4 C 0.43 20.70 4.16 87.66 0.36 21.07 16 5 O -0.62 -34.50 13.72 -3.08 -0.04 -34.54 16 6 N -0.42 -21.10 2.92 -613.12 -1.79 -22.89 16 7 C -0.35 -19.80 8.85 84.04 0.74 -19.06 16 8 H 0.06 3.83 7.41 -2.91 -0.02 3.81 16 9 C 0.02 0.92 4.52 84.92 0.38 1.30 16 10 N -0.87 -44.13 10.28 21.66 0.22 -43.90 16 11 Si 0.97 42.45 29.57 68.60 2.03 44.48 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 C 0.11 4.69 2.32 44.99 0.10 4.79 16 16 C -0.15 -6.02 8.06 30.59 0.25 -5.78 16 17 C -0.16 -5.63 7.83 30.59 0.24 -5.39 16 18 C -0.15 -5.08 4.04 30.75 0.12 -4.95 16 19 C 0.06 1.96 6.56 72.08 0.47 2.43 16 20 O -0.39 -13.82 10.77 -148.98 -1.60 -15.42 16 21 C 0.07 2.37 6.62 72.01 0.48 2.85 16 22 C -0.15 -5.06 5.07 30.68 0.16 -4.90 16 23 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.06 1.56 6.21 -2.38 -0.01 1.54 16 25 H 0.01 0.38 7.35 -2.39 -0.02 0.36 16 26 H 0.27 13.06 8.32 -92.70 -0.77 12.29 16 27 H 0.10 4.40 5.95 -2.39 -0.01 4.39 16 28 H 0.06 2.79 7.58 -2.38 -0.02 2.77 16 29 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 30 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.08 3.11 5.84 -2.38 -0.01 3.10 16 32 H 0.08 2.58 6.43 -2.38 -0.02 2.56 16 33 H 0.10 2.79 8.14 -2.39 -0.02 2.78 16 34 H 0.12 3.31 8.14 -2.38 -0.02 3.29 16 35 H 0.04 1.76 5.97 -2.39 -0.01 1.75 16 36 H 0.12 3.62 8.14 -2.38 -0.02 3.60 16 37 H 0.02 0.75 7.38 -2.39 -0.02 0.74 16 38 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.10 3.43 4.09 -2.39 -0.01 3.42 16 Total: -1.00 -64.36 292.32 3.17 -61.19 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 1.06 Total: 25.69 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 4.32 Total: -1.55 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -1.57 Total: -66.79 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: -2.66 Total: -63.01 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -64.36 3.17 -61.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706742562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.086 kcal (2) G-P(sol) polarization free energy of solvation -64.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds