Wall clock time and date at job start Mon Mar 30 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46817 * 2 1 4 4 C 1.53001 * 109.47090 * 239.99586 * 2 1 3 5 5 H 1.08998 * 109.47012 * 64.12127 * 4 2 1 6 6 N 1.46504 * 109.46575 * 184.11438 * 4 2 1 7 7 C 1.34770 * 120.00463 * 274.99887 * 6 4 2 8 8 N 1.34770 * 120.00163 * 180.02562 * 7 6 4 9 9 O 1.21588 * 119.99504 * 0.02562 * 7 6 4 10 10 C 1.50699 * 109.47112 * 304.11710 * 4 2 1 11 11 O 1.21292 * 120.00138 * 279.96496 * 10 4 2 12 12 N 1.34771 * 119.99774 * 99.97285 * 10 4 2 13 13 C 1.37100 * 120.00014 * 173.41942 * 12 10 4 14 14 H 1.07993 * 120.00334 * 139.65286 * 13 12 10 15 15 C 1.38952 * 119.99712 * 319.65209 * 13 12 10 16 16 N 1.31404 * 120.00131 * 159.28726 * 15 13 12 17 17 Si 1.86806 * 120.00074 * 339.28238 * 15 13 12 18 18 H 1.48503 * 109.46827 * 94.99295 * 17 15 13 19 19 H 1.48498 * 109.47019 * 214.99372 * 17 15 13 20 20 H 1.48503 * 109.46834 * 334.99607 * 17 15 13 21 21 C 1.46498 * 120.00203 * 353.41429 * 12 10 4 22 22 C 1.53001 * 117.50096 * 187.34355 * 21 12 10 23 23 C 1.53006 * 117.49856 * 118.68452 * 21 12 10 24 24 H 1.08996 * 109.47000 * 54.09203 * 1 2 3 25 25 H 1.09000 * 109.46847 * 174.08594 * 1 2 3 26 26 H 1.08994 * 109.47165 * 294.08512 * 1 2 3 27 27 H 1.09003 * 109.46552 * 119.99524 * 2 1 3 28 28 H 1.09000 * 109.47812 * 59.99638 * 3 2 1 29 29 H 1.09004 * 109.47342 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47171 * 299.99145 * 3 2 1 31 31 H 0.97004 * 119.99392 * 95.00486 * 6 4 2 32 32 H 0.96998 * 120.00308 * 359.97438 * 8 7 6 33 33 H 0.97001 * 119.99930 * 180.02562 * 8 7 6 34 34 H 0.97003 * 120.00187 * 179.97438 * 16 15 13 35 35 H 1.08994 * 115.55023 * 333.01934 * 21 12 10 36 36 H 1.09011 * 117.49654 * 0.02562 * 22 21 12 37 37 H 1.09000 * 117.50101 * 145.02124 * 22 21 12 38 38 H 1.08993 * 117.50010 * 214.98167 * 23 21 12 39 39 H 1.09004 * 117.49776 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.7383 -0.1667 -2.1377 6 7 3.5018 -0.8077 -1.2006 7 6 4.2527 0.2195 -1.6447 8 7 5.5973 0.1398 -1.6004 9 8 3.7170 1.2181 -2.0854 10 6 1.4562 -2.1097 -1.3012 11 8 1.9396 -2.9964 -0.6295 12 7 0.3970 -2.3659 -2.0941 13 6 -0.0502 -3.6530 -2.2459 14 1 -1.1104 -3.8568 -2.2719 15 6 0.8608 -4.6953 -2.3664 16 7 0.4871 -5.9280 -2.1065 17 14 2.6169 -4.3442 -2.8980 18 1 3.4783 -4.2007 -1.6969 19 1 3.1150 -5.4665 -3.7332 20 1 2.6532 -3.0863 -3.6864 21 6 -0.2767 -1.2692 -2.7938 22 6 -1.5721 -1.5966 -3.5391 23 6 -0.2893 -1.3090 -4.3232 24 1 -0.3633 0.6027 -0.8323 25 1 -0.3633 -1.0222 -0.1059 26 1 -0.3633 0.4194 0.9381 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 3.9290 -1.6043 -0.8487 32 1 6.0247 -0.6567 -1.2485 33 1 6.1378 0.8792 -1.9198 34 1 1.1230 -6.6556 -2.1909 35 1 -0.2039 -0.2920 -2.3164 36 1 -1.9234 -2.6281 -3.5085 37 1 -2.3515 -0.8347 -3.5524 38 1 -0.2253 -0.3580 -4.8520 39 1 0.2040 -2.1510 -4.8089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706855804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:10 Heat of formation + Delta-G solvation = -23.824247 kcal Electronic energy + Delta-G solvation = -22628.071526 eV Core-core repulsion = 19379.482928 eV Total energy + Delta-G solvation = -3248.588598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.31997 -38.95239 -36.58436 -35.58436 -33.74925 -32.98782 -32.41414 -31.47975 -27.52815 -26.49123 -24.55950 -21.95032 -21.51481 -21.08153 -20.47755 -19.03368 -18.39072 -17.34510 -16.58811 -16.15947 -15.61181 -15.39539 -14.75833 -14.31776 -14.04245 -13.96148 -13.65853 -13.29186 -12.86933 -12.52575 -12.27141 -12.21918 -11.93948 -11.45415 -11.24668 -11.16536 -10.83913 -10.66872 -10.44632 -10.39888 -10.16412 -10.02405 -9.93893 -9.70172 -9.52651 -8.84001 -8.69476 -8.45089 -7.54158 -6.30932 -4.02004 2.93394 3.27287 3.38340 3.40400 3.47826 3.66780 4.27204 4.40092 4.58742 4.67701 5.01222 5.21169 5.26219 5.30841 5.47621 5.59663 5.63965 5.71703 5.79815 5.94919 6.03043 6.16466 6.19674 6.28484 6.30116 6.38034 6.58171 6.68752 6.69985 6.73950 6.84447 6.86892 7.03228 7.74475 7.88146 8.15982 8.67190 8.80578 8.81306 9.33067 9.70436 10.74996 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.009491 C = 0.007747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.169636 B = 2949.333608 C = 3613.559854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 C -0.133 4.133 4 C 0.151 3.849 5 H 0.100 0.900 6 N -0.726 5.726 7 C 0.707 3.293 8 N -0.871 5.871 9 O -0.593 6.593 10 C 0.448 3.552 11 O -0.544 6.544 12 N -0.424 5.424 13 C -0.345 4.345 14 H 0.100 0.900 15 C 0.094 3.906 16 N -0.857 5.857 17 Si 0.898 3.102 18 H -0.257 1.257 19 H -0.304 1.304 20 H -0.275 1.275 21 C 0.051 3.949 22 C -0.172 4.172 23 C -0.198 4.198 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.402 0.598 32 H 0.396 0.604 33 H 0.412 0.588 34 H 0.273 0.727 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.783 11.736 0.707 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.117 4.117 3 C -0.190 4.190 4 C 0.042 3.958 5 H 0.118 0.882 6 N -0.383 5.383 7 C 0.405 3.595 8 N -0.440 5.440 9 O -0.472 6.472 10 C 0.238 3.762 11 O -0.427 6.427 12 N -0.144 5.144 13 C -0.471 4.471 14 H 0.117 0.883 15 C -0.116 4.116 16 N -0.491 5.491 17 Si 0.727 3.273 18 H -0.183 1.183 19 H -0.233 1.233 20 H -0.200 1.200 21 C -0.055 4.055 22 C -0.210 4.210 23 C -0.236 4.236 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.238 0.762 32 H 0.223 0.777 33 H 0.243 0.757 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.410 11.826 0.721 12.642 hybrid contribution 1.537 -0.475 -0.209 1.622 sum 5.947 11.351 0.513 12.824 Atomic orbital electron populations 1.22031 0.94436 1.03199 1.01471 1.21395 0.96268 0.96498 0.97508 1.21840 1.01309 0.94860 1.00981 1.20904 0.78942 0.95854 1.00147 0.88219 1.44954 1.06337 1.19404 1.67566 1.15872 0.81647 0.83457 0.78515 1.42973 1.05579 1.23627 1.71773 1.90938 1.71803 1.31377 1.53070 1.20052 0.85045 0.88954 0.82182 1.90558 1.61436 1.46782 1.43883 1.43123 1.27397 1.06111 1.37745 1.18786 0.94500 0.79578 1.54254 0.88263 1.25231 0.99236 0.94395 0.92709 1.69750 1.37018 1.00094 1.42286 0.86574 0.85516 0.77217 0.77955 1.18260 1.23302 1.19973 1.22192 0.99613 0.92642 0.91024 1.23142 0.90592 1.03583 1.03656 1.23267 1.02394 1.02621 0.95364 0.92412 0.91008 0.92500 0.90642 0.93746 0.92644 0.92126 0.76220 0.77659 0.75653 0.91709 0.86217 0.87176 0.89348 0.89410 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 7.80 37.16 0.29 -2.08 16 2 C -0.10 -1.59 2.70 -90.62 -0.24 -1.84 16 3 C -0.13 -1.99 7.78 37.15 0.29 -1.70 16 4 C 0.15 2.86 1.79 -69.08 -0.12 2.74 16 5 H 0.10 1.94 5.80 -51.93 -0.30 1.64 16 6 N -0.73 -12.69 5.01 -59.81 -0.30 -12.99 16 7 C 0.71 11.38 7.37 -86.93 -0.64 10.74 16 8 N -0.87 -9.73 8.88 27.63 0.25 -9.49 16 9 O -0.59 -11.09 14.31 5.29 0.08 -11.02 16 10 C 0.45 10.33 3.42 -10.99 -0.04 10.29 16 11 O -0.54 -14.31 12.29 5.55 0.07 -14.25 16 12 N -0.42 -9.89 2.19 -107.73 -0.24 -10.13 16 13 C -0.35 -9.37 8.73 -14.93 -0.13 -9.50 16 14 H 0.10 2.80 6.80 -52.49 -0.36 2.44 16 15 C 0.09 2.69 4.81 -17.47 -0.08 2.61 16 16 N -0.86 -25.50 13.96 55.50 0.77 -24.72 16 17 Si 0.90 23.22 24.87 -169.99 -4.23 19.00 16 18 H -0.26 -6.71 6.40 56.52 0.36 -6.35 16 19 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 20 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 21 C 0.05 0.96 4.71 -67.93 -0.32 0.64 16 22 C -0.17 -2.94 9.82 -26.69 -0.26 -3.21 16 23 C -0.20 -3.49 10.30 -26.69 -0.27 -3.76 16 24 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 25 H 0.07 1.30 6.23 -51.93 -0.32 0.98 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.88 5.66 -51.93 -0.29 0.58 16 30 H 0.06 0.95 7.79 -51.93 -0.40 0.54 16 31 H 0.40 6.96 8.05 -40.82 -0.33 6.63 16 32 H 0.40 3.50 8.84 -40.82 -0.36 3.14 16 33 H 0.41 3.77 8.93 -40.82 -0.36 3.41 16 34 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.12 2.00 4.11 -51.93 -0.21 1.79 16 36 H 0.11 2.11 6.43 -51.92 -0.33 1.78 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 303.59 15.07 4.57 4.57 Total: -1.00 -33.28 303.59 -5.89 -39.17 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -5.33 Total: 14.93 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.54 Total: 4.92 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.48 Total: -57.33 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.14 Total: -25.26 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.23 Total: 19.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.28 -5.89 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706855804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.341 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds