Wall clock time and date at job start Mon Mar 30 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46817 * 2 1 4 4 C 1.53001 * 109.47090 * 239.99586 * 2 1 3 5 5 H 1.08998 * 109.47012 * 64.12127 * 4 2 1 6 6 N 1.46504 * 109.46575 * 184.11438 * 4 2 1 7 7 C 1.34770 * 120.00463 * 274.99887 * 6 4 2 8 8 N 1.34770 * 120.00163 * 180.02562 * 7 6 4 9 9 O 1.21588 * 119.99504 * 0.02562 * 7 6 4 10 10 C 1.50699 * 109.47112 * 304.11710 * 4 2 1 11 11 O 1.21292 * 120.00138 * 279.96496 * 10 4 2 12 12 N 1.34771 * 119.99774 * 99.97285 * 10 4 2 13 13 C 1.37100 * 120.00014 * 173.41942 * 12 10 4 14 14 H 1.07993 * 120.00334 * 139.65286 * 13 12 10 15 15 C 1.38952 * 119.99712 * 319.65209 * 13 12 10 16 16 N 1.31404 * 120.00131 * 159.28726 * 15 13 12 17 17 Si 1.86806 * 120.00074 * 339.28238 * 15 13 12 18 18 H 1.48503 * 109.46827 * 94.99295 * 17 15 13 19 19 H 1.48498 * 109.47019 * 214.99372 * 17 15 13 20 20 H 1.48503 * 109.46834 * 334.99607 * 17 15 13 21 21 C 1.46498 * 120.00203 * 353.41429 * 12 10 4 22 22 C 1.53001 * 117.50096 * 187.34355 * 21 12 10 23 23 C 1.53006 * 117.49856 * 118.68452 * 21 12 10 24 24 H 1.08996 * 109.47000 * 54.09203 * 1 2 3 25 25 H 1.09000 * 109.46847 * 174.08594 * 1 2 3 26 26 H 1.08994 * 109.47165 * 294.08512 * 1 2 3 27 27 H 1.09003 * 109.46552 * 119.99524 * 2 1 3 28 28 H 1.09000 * 109.47812 * 59.99638 * 3 2 1 29 29 H 1.09004 * 109.47342 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47171 * 299.99145 * 3 2 1 31 31 H 0.97004 * 119.99392 * 95.00486 * 6 4 2 32 32 H 0.96998 * 120.00308 * 359.97438 * 8 7 6 33 33 H 0.97001 * 119.99930 * 180.02562 * 8 7 6 34 34 H 0.97003 * 120.00187 * 179.97438 * 16 15 13 35 35 H 1.08994 * 115.55023 * 333.01934 * 21 12 10 36 36 H 1.09011 * 117.49654 * 0.02562 * 22 21 12 37 37 H 1.09000 * 117.50101 * 145.02124 * 22 21 12 38 38 H 1.08993 * 117.50010 * 214.98167 * 23 21 12 39 39 H 1.09004 * 117.49776 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.7383 -0.1667 -2.1377 6 7 3.5018 -0.8077 -1.2006 7 6 4.2527 0.2195 -1.6447 8 7 5.5973 0.1398 -1.6004 9 8 3.7170 1.2181 -2.0854 10 6 1.4562 -2.1097 -1.3012 11 8 1.9396 -2.9964 -0.6295 12 7 0.3970 -2.3659 -2.0941 13 6 -0.0502 -3.6530 -2.2459 14 1 -1.1104 -3.8568 -2.2719 15 6 0.8608 -4.6953 -2.3664 16 7 0.4871 -5.9280 -2.1065 17 14 2.6169 -4.3442 -2.8980 18 1 3.4783 -4.2007 -1.6969 19 1 3.1150 -5.4665 -3.7332 20 1 2.6532 -3.0863 -3.6864 21 6 -0.2767 -1.2692 -2.7938 22 6 -1.5721 -1.5966 -3.5391 23 6 -0.2893 -1.3090 -4.3232 24 1 -0.3633 0.6027 -0.8323 25 1 -0.3633 -1.0222 -0.1059 26 1 -0.3633 0.4194 0.9381 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 3.9290 -1.6043 -0.8487 32 1 6.0247 -0.6567 -1.2485 33 1 6.1378 0.8792 -1.9198 34 1 1.1230 -6.6556 -2.1909 35 1 -0.2039 -0.2920 -2.3164 36 1 -1.9234 -2.6281 -3.5085 37 1 -2.3515 -0.8347 -3.5524 38 1 -0.2253 -0.3580 -4.8520 39 1 0.2040 -2.1510 -4.8089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706855804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:09 Heat of formation + Delta-G solvation = -50.623918 kcal Electronic energy + Delta-G solvation = -22629.233647 eV Core-core repulsion = 19379.482928 eV Total energy + Delta-G solvation = -3249.750719 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83510 -40.46116 -38.17585 -37.06512 -35.02023 -34.87585 -33.66063 -33.39098 -29.09362 -27.77191 -26.38809 -23.48018 -23.02628 -22.32377 -22.05695 -20.59193 -19.81945 -18.74990 -18.21439 -17.70855 -17.33864 -16.77141 -16.23588 -15.87819 -15.73894 -15.25013 -15.21918 -15.00275 -14.64092 -14.26580 -13.81850 -13.58102 -13.40722 -13.13346 -12.74687 -12.62052 -12.44786 -12.23287 -12.08174 -11.98547 -11.76442 -11.59232 -11.34352 -11.24086 -10.82946 -10.62358 -10.46349 -10.00074 -9.41100 -8.48120 -6.17118 1.14001 1.29684 1.35946 1.60201 1.99669 2.15099 2.31957 2.59794 2.92286 3.21951 3.52954 3.65099 3.88351 3.90886 4.07977 4.13741 4.27565 4.31552 4.38568 4.70057 4.82539 4.86546 4.90158 5.01284 5.03406 5.17203 5.18634 5.31623 5.41148 5.43429 5.49864 5.66114 5.76393 5.86919 6.04682 6.67990 6.84168 6.97660 7.28661 7.62312 7.78404 8.61464 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.009491 C = 0.007747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.169636 B = 2949.333608 C = 3613.559854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.120 4.120 4 C 0.160 3.840 5 H 0.101 0.899 6 N -0.733 5.733 7 C 0.705 3.295 8 N -0.848 5.848 9 O -0.618 6.618 10 C 0.450 3.550 11 O -0.582 6.582 12 N -0.437 5.437 13 C -0.338 4.338 14 H 0.077 0.923 15 C 0.046 3.954 16 N -0.902 5.902 17 Si 0.947 3.053 18 H -0.262 1.262 19 H -0.303 1.303 20 H -0.269 1.269 21 C 0.030 3.970 22 C -0.160 4.160 23 C -0.191 4.191 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.402 0.598 32 H 0.410 0.590 33 H 0.425 0.575 34 H 0.273 0.727 35 H 0.148 0.852 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 14.761 0.470 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.177 4.177 4 C 0.051 3.949 5 H 0.118 0.882 6 N -0.389 5.389 7 C 0.403 3.597 8 N -0.418 5.418 9 O -0.499 6.499 10 C 0.241 3.759 11 O -0.467 6.467 12 N -0.156 5.156 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.159 4.159 16 N -0.539 5.539 17 Si 0.776 3.224 18 H -0.188 1.188 19 H -0.232 1.232 20 H -0.194 1.194 21 C -0.073 4.073 22 C -0.198 4.198 23 C -0.229 4.229 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.238 0.762 32 H 0.240 0.760 33 H 0.259 0.741 34 H 0.083 0.917 35 H 0.165 0.835 36 H 0.099 0.901 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.094 14.876 0.465 15.731 hybrid contribution 1.287 -1.347 -0.091 1.865 sum 6.382 13.529 0.374 14.963 Atomic orbital electron populations 1.22001 0.93523 1.01676 1.03577 1.21396 0.96998 0.97192 0.95686 1.21716 1.00629 0.93467 1.01938 1.20774 0.79917 0.92762 1.01467 0.88153 1.44949 1.05844 1.19985 1.68169 1.15967 0.82802 0.82674 0.78234 1.42759 1.03899 1.24622 1.70532 1.90919 1.72678 1.32096 1.54197 1.20813 0.84073 0.90280 0.80781 1.90526 1.62563 1.48477 1.45135 1.43234 1.27881 1.05858 1.38664 1.18701 0.93514 0.81506 1.52746 0.90527 1.25854 1.02171 0.94466 0.93435 1.69833 1.38040 1.00882 1.45128 0.85785 0.82340 0.77054 0.77267 1.18810 1.23190 1.19432 1.22498 1.00779 0.92217 0.91855 1.23189 0.91080 1.03281 1.02219 1.23318 1.02038 1.03378 0.94172 0.90577 0.94194 0.90213 0.91616 0.91454 0.93560 0.92386 0.76247 0.76044 0.74133 0.91743 0.83493 0.90062 0.85151 0.85651 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 7.80 71.98 0.56 -3.70 16 2 C -0.09 -2.85 2.70 -10.79 -0.03 -2.88 16 3 C -0.12 -3.23 7.78 71.98 0.56 -2.67 16 4 C 0.16 5.82 1.79 44.24 0.08 5.90 16 5 H 0.10 3.66 5.80 -2.39 -0.01 3.64 16 6 N -0.73 -24.37 5.01 -461.42 -2.31 -26.68 16 7 C 0.71 21.01 7.37 179.06 1.32 22.33 16 8 N -0.85 -16.61 8.88 -184.76 -1.64 -18.25 16 9 O -0.62 -21.51 14.31 -3.99 -0.06 -21.57 16 10 C 0.45 20.57 3.42 87.66 0.30 20.87 16 11 O -0.58 -30.93 12.29 -3.07 -0.04 -30.97 16 12 N -0.44 -20.34 2.19 -613.14 -1.34 -21.68 16 13 C -0.34 -18.81 8.73 84.04 0.73 -18.08 16 14 H 0.08 4.52 6.80 -2.91 -0.02 4.50 16 15 C 0.05 2.68 4.81 84.93 0.41 3.09 16 16 N -0.90 -55.67 13.96 21.66 0.30 -55.37 16 17 Si 0.95 48.88 24.87 68.60 1.71 50.59 16 18 H -0.26 -13.64 6.40 99.48 0.64 -13.00 16 19 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 20 H -0.27 -13.44 7.11 99.48 0.71 -12.74 16 21 C 0.03 1.10 4.71 44.99 0.21 1.31 16 22 C -0.16 -5.18 9.82 30.62 0.30 -4.88 16 23 C -0.19 -6.30 10.30 30.62 0.32 -5.98 16 24 H 0.08 1.85 6.44 -2.39 -0.02 1.84 16 25 H 0.04 1.39 6.23 -2.39 -0.01 1.38 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.33 5.66 -2.38 -0.01 1.32 16 30 H 0.06 1.60 7.79 -2.39 -0.02 1.58 16 31 H 0.40 13.43 8.05 -92.71 -0.75 12.68 16 32 H 0.41 6.12 8.84 -92.71 -0.82 5.30 16 33 H 0.42 6.48 8.93 -92.71 -0.83 5.66 16 34 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 35 H 0.15 4.45 4.11 -2.39 -0.01 4.44 16 36 H 0.08 3.14 6.43 -2.38 -0.02 3.12 16 37 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 Total: -1.00 -73.95 303.59 0.03 -73.92 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -1.35 Total: 34.69 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 4.76 Total: 15.32 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -4.99 Total: -121.98 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.09 Total: -52.54 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.71 Total: 50.59 kcal Total: -73.95 0.03 -73.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706855804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.296 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds