Wall clock time and date at job start Mon Mar 30 2020 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46494 * 2 1 4 4 C 1.52997 * 109.47140 * 240.00035 * 2 1 3 5 5 H 1.08999 * 109.46826 * 303.51688 * 4 2 1 6 6 N 1.46497 * 109.47127 * 183.51901 * 4 2 1 7 7 C 1.34777 * 120.00305 * 84.99729 * 6 4 2 8 8 N 1.34775 * 120.00089 * 180.02562 * 7 6 4 9 9 O 1.21591 * 119.99765 * 0.02562 * 7 6 4 10 10 C 1.50696 * 109.47091 * 63.51707 * 4 2 1 11 11 O 1.21293 * 119.99985 * 87.29567 * 10 4 2 12 12 N 1.34782 * 119.99908 * 267.28953 * 10 4 2 13 13 C 1.37101 * 119.99792 * 174.86740 * 12 10 4 14 14 H 1.08001 * 120.00269 * 22.56094 * 13 12 10 15 15 C 1.38952 * 119.99905 * 202.55755 * 13 12 10 16 16 N 1.31408 * 119.99850 * 15.38635 * 15 13 12 17 17 Si 1.86796 * 119.99760 * 195.38345 * 15 13 12 18 18 H 1.48504 * 109.46979 * 90.00749 * 17 15 13 19 19 H 1.48504 * 109.47040 * 210.00092 * 17 15 13 20 20 H 1.48492 * 109.47502 * 330.00357 * 17 15 13 21 21 C 1.46500 * 119.99897 * 354.86918 * 12 10 4 22 22 C 1.53001 * 117.49834 * 307.72568 * 21 12 10 23 23 C 1.53004 * 117.49739 * 239.06520 * 21 12 10 24 24 H 1.09002 * 109.46928 * 294.99515 * 1 2 3 25 25 H 1.08999 * 109.46620 * 175.00057 * 1 2 3 26 26 H 1.08996 * 109.47371 * 54.99476 * 1 2 3 27 27 H 1.08998 * 109.47022 * 119.99306 * 2 1 3 28 28 H 1.08994 * 109.47654 * 60.00195 * 3 2 1 29 29 H 1.09005 * 109.46685 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47370 * 299.99351 * 3 2 1 31 31 H 0.97000 * 119.99982 * 265.00213 * 6 4 2 32 32 H 0.97005 * 120.00323 * 359.97438 * 8 7 6 33 33 H 0.96999 * 119.99985 * 180.02562 * 8 7 6 34 34 H 0.97001 * 119.99996 * 184.95326 * 16 15 13 35 35 H 1.08994 * 115.55065 * 93.40046 * 21 12 10 36 36 H 1.08995 * 117.49610 * 0.02562 * 22 21 12 37 37 H 1.08996 * 117.49363 * 145.02591 * 22 21 12 38 38 H 1.08994 * 117.50100 * 214.98343 * 23 21 12 39 39 H 1.09002 * 117.49892 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6261 -1.7291 -1.2813 6 7 3.5026 -0.7951 -1.2076 7 6 4.1080 -1.7969 -0.5396 8 7 5.4535 -1.8645 -0.5009 9 8 3.4403 -2.6397 0.0281 10 6 1.6101 0.0377 -2.4781 11 8 2.3001 0.9385 -2.9068 12 7 0.4591 -0.2845 -3.1008 13 6 0.0147 0.4718 -4.1545 14 1 0.7116 1.0733 -4.7193 15 6 -1.3322 0.4644 -4.4958 16 7 -2.2212 -0.0095 -3.6520 17 14 -1.8791 1.1280 -6.1540 18 1 -1.8754 0.0289 -7.1527 19 1 -3.2506 1.6852 -6.0363 20 1 -0.9463 2.1974 -6.5914 21 6 -0.3173 -1.4429 -2.6517 22 6 0.4169 -2.7793 -2.5251 23 6 -0.5766 -2.5567 -3.6683 24 1 -0.3633 0.4342 0.9314 25 1 -0.3632 -1.0238 -0.0896 26 1 -0.3634 0.5895 -0.8417 27 1 1.8934 -0.5137 0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8901 31 1 4.0352 -0.1229 -1.6607 32 1 5.9862 -1.1923 -0.9541 33 1 5.8893 -2.5858 -0.0204 34 1 -3.1515 -0.0813 -3.9172 35 1 -1.1032 -1.2299 -1.9273 36 1 1.4775 -2.7965 -2.7756 37 1 0.1136 -3.4455 -1.7176 38 1 -1.5329 -3.0765 -3.6123 39 1 -0.1699 -2.4273 -4.6713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706855806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:12 Heat of formation + Delta-G solvation = -33.284500 kcal Electronic energy + Delta-G solvation = -22522.243390 eV Core-core repulsion = 19273.244565 eV Total energy + Delta-G solvation = -3248.998826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.11594 -38.74765 -36.37672 -35.22816 -33.58962 -33.10067 -32.29482 -31.08184 -27.05395 -26.42952 -24.61301 -21.86618 -21.48609 -21.16529 -20.29430 -18.48235 -18.01969 -17.02598 -16.90671 -15.47958 -15.44525 -14.97779 -14.83699 -14.32728 -13.99905 -13.91585 -13.52728 -13.33279 -12.79180 -12.42216 -12.19021 -11.59878 -11.47062 -11.24523 -11.11642 -10.85516 -10.67919 -10.44971 -10.39927 -10.38229 -10.30035 -9.99785 -9.78959 -9.52372 -9.48343 -8.87451 -8.61863 -8.25867 -7.74562 -6.32460 -3.91497 3.09484 3.19846 3.25647 3.29979 3.48587 3.82459 4.11205 4.62963 4.68352 4.81244 5.07515 5.35503 5.52858 5.59232 5.73389 5.76212 5.93385 6.10259 6.16269 6.20924 6.27851 6.36581 6.42984 6.52803 6.57529 6.66039 6.83539 6.85567 6.88899 6.97264 7.03043 7.10723 7.21623 7.54907 8.06580 8.28418 8.43188 8.90233 9.12647 9.37170 9.89903 10.70704 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.006763 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.482066 B = 4139.059317 C = 4295.585088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.143 4.143 4 C 0.138 3.862 5 H 0.116 0.884 6 N -0.722 5.722 7 C 0.704 3.296 8 N -0.872 5.872 9 O -0.599 6.599 10 C 0.455 3.545 11 O -0.586 6.586 12 N -0.410 5.410 13 C -0.313 4.313 14 H 0.100 0.900 15 C 0.043 3.957 16 N -0.865 5.865 17 Si 0.917 3.083 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.126 3.874 22 C -0.221 4.221 23 C -0.158 4.158 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.401 0.599 32 H 0.395 0.605 33 H 0.410 0.590 34 H 0.267 0.733 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.054 -3.095 5.001 9.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.201 4.201 4 C 0.030 3.970 5 H 0.133 0.867 6 N -0.378 5.378 7 C 0.402 3.598 8 N -0.440 5.440 9 O -0.478 6.478 10 C 0.243 3.757 11 O -0.471 6.471 12 N -0.127 5.127 13 C -0.440 4.440 14 H 0.117 0.883 15 C -0.162 4.162 16 N -0.502 5.502 17 Si 0.744 3.256 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.195 1.195 21 C 0.020 3.980 22 C -0.259 4.259 23 C -0.196 4.196 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.237 0.763 32 H 0.223 0.777 33 H 0.242 0.758 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.411 -3.227 5.208 8.867 hybrid contribution 0.268 0.488 -1.067 1.203 sum 6.679 -2.739 4.141 8.322 Atomic orbital electron populations 1.21976 0.94034 1.02469 1.02348 1.21301 0.96545 0.96508 0.96809 1.21827 1.00377 0.95883 1.01995 1.21206 0.78908 1.02314 0.94577 0.86663 1.44951 1.07468 1.29009 1.56374 1.15972 0.82120 0.82015 0.79701 1.42968 1.05591 1.34181 1.61285 1.90935 1.63862 1.42096 1.50896 1.19807 0.84390 0.86084 0.85393 1.90494 1.54755 1.34070 1.67782 1.43053 1.18811 1.22745 1.28140 1.19594 0.92382 1.25042 1.06976 0.88272 1.25193 0.95236 0.97145 0.98662 1.69932 1.02428 1.44771 1.33079 0.86067 0.77962 0.79191 0.82378 1.20453 1.21002 1.19471 1.21458 0.95739 0.80183 1.00590 1.23532 0.98083 1.01894 1.02371 1.22898 0.98731 1.02792 0.95134 0.93207 0.92373 0.90629 0.91061 0.93653 0.93396 0.91146 0.76305 0.77739 0.75820 0.92242 0.85908 0.89582 0.88817 0.89471 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 7.48 37.16 0.28 -2.46 16 2 C -0.09 -1.66 2.88 -90.62 -0.26 -1.92 16 3 C -0.14 -2.53 8.58 37.16 0.32 -2.21 16 4 C 0.14 2.70 1.59 -69.09 -0.11 2.59 16 5 H 0.12 2.33 3.56 -51.93 -0.18 2.15 16 6 N -0.72 -12.31 4.45 -59.82 -0.27 -12.58 16 7 C 0.70 11.46 8.80 -86.92 -0.77 10.69 16 8 N -0.87 -9.52 8.88 27.63 0.25 -9.28 16 9 O -0.60 -11.91 16.84 5.29 0.09 -11.82 16 10 C 0.46 10.51 4.98 -10.98 -0.05 10.46 16 11 O -0.59 -14.84 14.63 5.55 0.08 -14.76 16 12 N -0.41 -9.91 2.46 -107.73 -0.26 -10.17 16 13 C -0.31 -8.28 9.13 -14.93 -0.14 -8.42 16 14 H 0.10 2.78 7.39 -52.49 -0.39 2.39 16 15 C 0.04 1.08 4.93 -17.47 -0.09 0.99 16 16 N -0.86 -21.73 10.90 55.50 0.61 -21.12 16 17 Si 0.92 20.12 29.58 -169.99 -5.03 15.09 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 C 0.13 2.72 2.01 -67.93 -0.14 2.58 16 22 C -0.22 -4.19 7.83 -26.69 -0.21 -4.40 16 23 C -0.16 -3.19 9.52 -26.69 -0.25 -3.44 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.03 6.78 -51.93 -0.35 0.68 16 26 H 0.07 1.61 6.70 -51.93 -0.35 1.26 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.79 7.71 -51.93 -0.40 0.39 16 30 H 0.07 1.45 6.48 -51.93 -0.34 1.11 16 31 H 0.40 6.50 7.91 -40.82 -0.32 6.18 16 32 H 0.40 3.24 8.84 -40.82 -0.36 2.88 16 33 H 0.41 3.76 8.93 -40.82 -0.36 3.40 16 34 H 0.27 6.43 8.32 -40.82 -0.34 6.09 16 35 H 0.12 2.76 5.90 -51.93 -0.31 2.46 16 36 H 0.09 1.70 7.34 -51.93 -0.38 1.32 16 37 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -30.18 311.51 -6.68 -36.86 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -5.42 Total: 18.63 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.42 Total: 4.47 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.32 Total: -53.15 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: 0.17 Total: -26.58 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.18 -6.68 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706855806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.571 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds