Wall clock time and date at job start Mon Mar 30 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46494 * 2 1 4 4 C 1.52997 * 109.47140 * 240.00035 * 2 1 3 5 5 H 1.08999 * 109.46826 * 303.51688 * 4 2 1 6 6 N 1.46497 * 109.47127 * 183.51901 * 4 2 1 7 7 C 1.34777 * 120.00305 * 84.99729 * 6 4 2 8 8 N 1.34775 * 120.00089 * 180.02562 * 7 6 4 9 9 O 1.21591 * 119.99765 * 0.02562 * 7 6 4 10 10 C 1.50696 * 109.47091 * 63.51707 * 4 2 1 11 11 O 1.21293 * 119.99985 * 87.29567 * 10 4 2 12 12 N 1.34782 * 119.99908 * 267.28953 * 10 4 2 13 13 C 1.37101 * 119.99792 * 174.86740 * 12 10 4 14 14 H 1.08001 * 120.00269 * 22.56094 * 13 12 10 15 15 C 1.38952 * 119.99905 * 202.55755 * 13 12 10 16 16 N 1.31408 * 119.99850 * 15.38635 * 15 13 12 17 17 Si 1.86796 * 119.99760 * 195.38345 * 15 13 12 18 18 H 1.48504 * 109.46979 * 90.00749 * 17 15 13 19 19 H 1.48504 * 109.47040 * 210.00092 * 17 15 13 20 20 H 1.48492 * 109.47502 * 330.00357 * 17 15 13 21 21 C 1.46500 * 119.99897 * 354.86918 * 12 10 4 22 22 C 1.53001 * 117.49834 * 307.72568 * 21 12 10 23 23 C 1.53004 * 117.49739 * 239.06520 * 21 12 10 24 24 H 1.09002 * 109.46928 * 294.99515 * 1 2 3 25 25 H 1.08999 * 109.46620 * 175.00057 * 1 2 3 26 26 H 1.08996 * 109.47371 * 54.99476 * 1 2 3 27 27 H 1.08998 * 109.47022 * 119.99306 * 2 1 3 28 28 H 1.08994 * 109.47654 * 60.00195 * 3 2 1 29 29 H 1.09005 * 109.46685 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47370 * 299.99351 * 3 2 1 31 31 H 0.97000 * 119.99982 * 265.00213 * 6 4 2 32 32 H 0.97005 * 120.00323 * 359.97438 * 8 7 6 33 33 H 0.96999 * 119.99985 * 180.02562 * 8 7 6 34 34 H 0.97001 * 119.99996 * 184.95326 * 16 15 13 35 35 H 1.08994 * 115.55065 * 93.40046 * 21 12 10 36 36 H 1.08995 * 117.49610 * 0.02562 * 22 21 12 37 37 H 1.08996 * 117.49363 * 145.02591 * 22 21 12 38 38 H 1.08994 * 117.50100 * 214.98343 * 23 21 12 39 39 H 1.09002 * 117.49892 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6261 -1.7291 -1.2813 6 7 3.5026 -0.7951 -1.2076 7 6 4.1080 -1.7969 -0.5396 8 7 5.4535 -1.8645 -0.5009 9 8 3.4403 -2.6397 0.0281 10 6 1.6101 0.0377 -2.4781 11 8 2.3001 0.9385 -2.9068 12 7 0.4591 -0.2845 -3.1008 13 6 0.0147 0.4718 -4.1545 14 1 0.7116 1.0733 -4.7193 15 6 -1.3322 0.4644 -4.4958 16 7 -2.2212 -0.0095 -3.6520 17 14 -1.8791 1.1280 -6.1540 18 1 -1.8754 0.0289 -7.1527 19 1 -3.2506 1.6852 -6.0363 20 1 -0.9463 2.1974 -6.5914 21 6 -0.3173 -1.4429 -2.6517 22 6 0.4169 -2.7793 -2.5251 23 6 -0.5766 -2.5567 -3.6683 24 1 -0.3633 0.4342 0.9314 25 1 -0.3632 -1.0238 -0.0896 26 1 -0.3634 0.5895 -0.8417 27 1 1.8934 -0.5137 0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8901 31 1 4.0352 -0.1229 -1.6607 32 1 5.9862 -1.1923 -0.9541 33 1 5.8893 -2.5858 -0.0204 34 1 -3.1515 -0.0813 -3.9172 35 1 -1.1032 -1.2299 -1.9273 36 1 1.4775 -2.7965 -2.7756 37 1 0.1136 -3.4455 -1.7176 38 1 -1.5329 -3.0765 -3.6123 39 1 -0.1699 -2.4273 -4.6713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706855806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:11 Heat of formation + Delta-G solvation = -55.326866 kcal Electronic energy + Delta-G solvation = -22523.199219 eV Core-core repulsion = 19273.244565 eV Total energy + Delta-G solvation = -3249.954655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.66104 -40.25557 -38.06941 -36.83880 -34.94198 -34.84355 -33.60000 -32.95190 -28.67453 -27.91086 -26.42167 -23.47957 -23.16833 -22.57821 -21.82585 -20.01740 -19.38830 -18.77456 -18.23309 -17.24698 -17.11579 -16.52360 -16.28577 -15.88803 -15.54995 -15.46243 -15.00289 -14.95329 -14.35749 -14.14415 -13.88250 -13.24163 -13.00271 -12.97916 -12.86909 -12.46282 -12.29797 -12.15178 -12.13412 -11.93304 -11.82406 -11.54115 -11.38466 -11.15687 -10.66812 -10.64761 -10.22324 -9.85060 -9.63395 -8.24651 -5.91281 1.37801 1.44320 1.53460 1.79449 2.08173 2.21112 2.34682 2.92982 3.03558 3.18919 3.63344 3.78893 4.00162 4.09466 4.13794 4.23473 4.32170 4.49768 4.63412 4.74884 4.79704 4.84038 5.00211 5.03892 5.05765 5.15063 5.29994 5.37331 5.41967 5.48018 5.52009 5.57066 5.90972 6.08685 6.13172 6.53514 7.10311 7.20332 7.49290 7.69556 8.03676 8.76405 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.006763 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.482066 B = 4139.059317 C = 4295.585088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.136 4.136 4 C 0.149 3.851 5 H 0.111 0.889 6 N -0.722 5.722 7 C 0.703 3.297 8 N -0.846 5.846 9 O -0.634 6.634 10 C 0.452 3.548 11 O -0.617 6.617 12 N -0.419 5.419 13 C -0.345 4.345 14 H 0.071 0.929 15 C 0.017 3.983 16 N -0.873 5.873 17 Si 0.973 3.027 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.278 1.278 21 C 0.110 3.890 22 C -0.191 4.191 23 C -0.158 4.158 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.406 0.594 32 H 0.412 0.588 33 H 0.423 0.577 34 H 0.272 0.728 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.406 -3.972 5.866 10.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.193 4.193 4 C 0.040 3.960 5 H 0.129 0.871 6 N -0.378 5.378 7 C 0.400 3.600 8 N -0.415 5.415 9 O -0.516 6.516 10 C 0.241 3.759 11 O -0.504 6.504 12 N -0.136 5.136 13 C -0.473 4.473 14 H 0.089 0.911 15 C -0.187 4.187 16 N -0.510 5.510 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.204 1.204 21 C 0.005 3.995 22 C -0.229 4.229 23 C -0.195 4.195 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.242 0.758 32 H 0.242 0.758 33 H 0.257 0.743 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.806 -4.117 6.079 10.011 hybrid contribution 0.207 0.786 -1.314 1.545 sum 7.013 -3.331 4.765 9.109 Atomic orbital electron populations 1.21890 0.94120 1.02163 1.01931 1.21306 0.96423 0.96705 0.96356 1.21738 1.00947 0.95352 1.01274 1.20972 0.80472 1.01386 0.93183 0.87121 1.44835 1.06505 1.29612 1.56884 1.16084 0.83422 0.81201 0.79249 1.42701 1.03708 1.34676 1.60426 1.90912 1.65126 1.43196 1.52355 1.20432 0.83762 0.85831 0.85885 1.90457 1.55664 1.35477 1.68794 1.43154 1.19277 1.23368 1.27841 1.19471 0.92692 1.26573 1.08517 0.91106 1.25762 0.94760 0.97074 1.01129 1.69989 1.02611 1.44525 1.33835 0.85244 0.77417 0.78545 0.79059 1.19556 1.20162 1.20354 1.21401 0.96479 0.80245 1.01385 1.23495 0.97265 0.99974 1.02183 1.22903 0.99874 1.02301 0.94461 0.90890 0.92043 0.94246 0.89827 0.91396 0.92410 0.94705 0.75834 0.75813 0.74349 0.91799 0.86829 0.90386 0.86156 0.87861 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 7.48 71.98 0.54 -4.58 16 2 C -0.09 -3.09 2.88 -10.79 -0.03 -3.12 16 3 C -0.14 -4.67 8.58 71.98 0.62 -4.05 16 4 C 0.15 5.75 1.59 44.24 0.07 5.82 16 5 H 0.11 4.39 3.56 -2.39 -0.01 4.38 16 6 N -0.72 -23.85 4.45 -461.43 -2.05 -25.90 16 7 C 0.70 21.52 8.80 179.05 1.58 23.10 16 8 N -0.85 -16.26 8.88 -184.74 -1.64 -17.90 16 9 O -0.63 -24.05 16.84 -4.00 -0.07 -24.12 16 10 C 0.45 21.32 4.98 87.66 0.44 21.75 16 11 O -0.62 -32.28 14.63 -3.07 -0.04 -32.32 16 12 N -0.42 -20.77 2.46 -613.12 -1.51 -22.28 16 13 C -0.35 -18.88 9.13 84.04 0.77 -18.11 16 14 H 0.07 4.19 7.39 -2.91 -0.02 4.17 16 15 C 0.02 0.87 4.93 84.93 0.42 1.29 16 16 N -0.87 -43.90 10.90 21.66 0.24 -43.66 16 17 Si 0.97 41.50 29.58 68.60 2.03 43.53 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 C 0.11 4.75 2.01 44.99 0.09 4.84 16 22 C -0.19 -7.03 7.83 30.62 0.24 -6.79 16 23 C -0.16 -6.27 9.52 30.62 0.29 -5.98 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.06 2.12 6.78 -2.39 -0.02 2.10 16 26 H 0.04 1.69 6.70 -2.39 -0.02 1.68 16 27 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.83 7.71 -2.38 -0.02 1.81 16 30 H 0.03 1.44 6.48 -2.39 -0.02 1.42 16 31 H 0.41 12.80 7.91 -92.71 -0.73 12.06 16 32 H 0.41 5.59 8.84 -92.70 -0.82 4.77 16 33 H 0.42 6.53 8.93 -92.71 -0.83 5.70 16 34 H 0.27 12.92 8.32 -92.71 -0.77 12.14 16 35 H 0.11 5.13 5.90 -2.39 -0.01 5.11 16 36 H 0.08 3.02 7.34 -2.39 -0.02 3.00 16 37 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 38 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -65.88 311.51 0.69 -65.18 By element: Atomic # 1 Polarization: 44.57 SS G_CDS: -1.28 Total: 43.30 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 5.02 Total: 14.16 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.96 Total: -109.74 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -0.11 Total: -56.44 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -65.88 0.69 -65.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706855806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.856 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds