Wall clock time and date at job start Mon Mar 30 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00224 * 2 1 4 4 H 1.48506 * 109.47109 * 270.00685 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00061 * 3 2 1 6 6 H 1.48494 * 109.47293 * 150.00314 * 3 2 1 7 7 C 1.37875 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46846 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47398 * 305.00335 * 11 10 9 13 13 N 1.46896 * 109.47053 * 65.00581 * 11 10 9 14 14 C 1.50703 * 109.46912 * 185.00257 * 11 10 9 15 15 O 1.21285 * 119.99889 * 260.00048 * 14 11 10 16 16 N 1.34769 * 119.99927 * 80.00142 * 14 11 10 17 17 C 1.46068 * 118.73414 * 359.73437 * 16 14 11 18 18 C 1.52633 * 110.00899 * 243.80549 * 17 16 14 19 19 N 1.46919 * 108.94211 * 278.59445 * 18 17 16 20 20 C 1.33632 * 120.62812 * 71.87646 * 19 18 17 21 21 O 1.21275 * 119.77679 * 179.72356 * 20 19 18 22 22 C 1.51198 * 120.45399 * 359.69889 * 20 19 18 23 23 C 1.46161 * 118.72992 * 179.97438 * 16 14 11 24 24 H 0.96998 * 120.00041 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47229 * 60.00097 * 9 7 2 26 26 H 1.09001 * 109.47286 * 299.99924 * 9 7 2 27 27 H 1.09002 * 109.46824 * 60.00111 * 10 9 7 28 28 H 1.08991 * 109.47210 * 300.00195 * 10 9 7 29 29 H 1.00900 * 111.00550 * 59.99664 * 13 11 10 30 30 H 1.00896 * 111.00310 * 183.95250 * 13 11 10 31 31 H 1.09001 * 109.43103 * 3.91182 * 17 16 14 32 32 H 1.09001 * 109.42993 * 123.75993 * 17 16 14 33 33 H 1.08997 * 109.57791 * 158.72209 * 18 17 16 34 34 H 1.09005 * 109.57267 * 38.46469 * 18 17 16 35 35 H 0.97004 * 119.68772 * 251.89251 * 19 18 17 36 36 H 1.09010 * 109.61137 * 169.03627 * 22 20 19 37 37 H 1.08999 * 109.61243 * 48.52175 * 22 20 19 38 38 H 1.09002 * 109.46266 * 236.32170 * 23 16 14 39 39 H 1.08996 * 109.46734 * 356.29363 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 1 0.7890 -5.0072 0.8414 13 7 0.7272 -5.1183 -1.2556 14 6 2.4550 -6.1299 0.1215 15 8 2.7857 -6.7533 -0.8649 16 7 2.9591 -6.4591 1.3272 17 6 2.5463 -5.6860 2.4957 18 6 3.7486 -4.9594 3.0926 19 7 4.5006 -5.8965 3.9382 20 6 5.2187 -6.8816 3.3908 21 8 5.8376 -7.6433 4.1032 22 6 5.2645 -7.0535 1.8893 23 6 3.9019 -7.5726 1.4142 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8712 -3.6040 -0.8922 29 1 1.3462 -5.1025 -2.0523 30 1 0.1628 -5.9546 -1.2528 31 1 1.7940 -4.9550 2.1996 32 1 2.1241 -6.3571 3.2438 33 1 3.4051 -4.1187 3.6952 34 1 4.3906 -4.5956 2.2903 35 1 4.4754 -5.7993 4.9030 36 1 6.0414 -7.7717 1.6268 37 1 5.4755 -6.0938 1.4175 38 1 3.5272 -8.3111 2.1230 39 1 4.0108 -8.0339 0.4327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709481460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:36 Heat of formation + Delta-G solvation = -75.412552 kcal Electronic energy + Delta-G solvation = -21415.937188 eV Core-core repulsion = 18165.111552 eV Total energy + Delta-G solvation = -3250.825635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89676 -39.50140 -36.74917 -35.52165 -34.51155 -32.92002 -32.04400 -30.18895 -28.72633 -26.79470 -24.97920 -23.87673 -22.64002 -20.61571 -19.98568 -19.13410 -17.77998 -17.29347 -16.71832 -16.56102 -16.09437 -15.55699 -15.36230 -14.62866 -14.37178 -14.32214 -14.12522 -13.53649 -13.10506 -12.96092 -12.55491 -12.46596 -12.31144 -12.11894 -11.86917 -11.75010 -11.53385 -10.95774 -10.74943 -10.61038 -10.19748 -10.00909 -9.89127 -9.56520 -9.45312 -9.08454 -8.82219 -8.43270 -8.28444 -6.00972 -4.03674 2.40186 2.58129 2.83571 3.06079 3.29811 3.36968 3.38496 4.21517 4.42419 4.50641 4.68887 4.76019 4.86202 4.88879 4.91792 4.97583 5.16787 5.30758 5.35377 5.48083 5.57278 5.63843 5.68410 5.70404 6.27350 6.31468 6.53800 6.55568 6.95626 6.99834 7.14391 7.39433 7.66826 7.70696 7.87080 7.99540 8.04794 8.11083 8.39809 9.04344 9.60248 11.09750 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.005090 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.886093 B = 5499.303072 C = 6450.313401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.097 4.097 11 C 0.075 3.925 12 H 0.100 0.900 13 N -0.807 5.807 14 C 0.481 3.519 15 O -0.548 6.548 16 N -0.613 5.613 17 C 0.080 3.920 18 C 0.087 3.913 19 N -0.723 5.723 20 C 0.519 3.481 21 O -0.554 6.554 22 C -0.156 4.156 23 C 0.116 3.884 24 H 0.260 0.740 25 H 0.035 0.965 26 H 0.013 0.987 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.348 0.652 30 H 0.334 0.666 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.401 0.599 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -12.152 5.960 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.136 4.136 11 C -0.040 4.040 12 H 0.118 0.882 13 N -0.335 5.335 14 C 0.269 3.731 15 O -0.426 6.426 16 N -0.348 5.348 17 C -0.044 4.044 18 C -0.038 4.038 19 N -0.376 5.376 20 C 0.306 3.694 21 O -0.433 6.433 22 C -0.197 4.197 23 C -0.007 4.007 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.162 0.838 30 H 0.146 0.854 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.237 0.763 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.869 -12.094 5.791 14.266 hybrid contribution 1.012 0.221 0.361 1.097 sum 5.882 -11.873 6.152 14.609 Atomic orbital electron populations 1.69966 1.05951 1.26500 1.50622 1.24973 0.94771 0.99023 0.95391 0.86675 0.79799 0.83822 0.78139 1.20710 1.21289 1.20023 1.21245 0.92847 0.91247 1.50880 0.92998 1.19017 0.93503 0.89753 0.98273 1.21729 0.98950 0.92089 1.00806 1.21934 0.93595 0.93359 0.95151 0.88218 1.59001 1.26883 1.44354 1.03232 1.22944 0.82156 0.85713 0.82315 1.90642 1.61100 1.54131 1.36685 1.47992 1.45456 1.33184 1.08142 1.22177 0.97690 0.96391 0.88113 1.22185 0.93542 0.91982 0.96070 1.45988 1.49844 1.31122 1.10632 1.20603 0.77716 0.79801 0.91326 1.90746 1.44449 1.44183 1.63880 1.22417 1.00186 1.04974 0.92145 1.21317 0.86782 0.88811 1.03823 0.93039 0.94642 0.96862 0.92749 0.92709 0.83751 0.85372 0.86628 0.90461 0.87371 0.89489 0.76262 0.87450 0.88522 0.91125 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.83 9.11 -34.44 -0.31 -14.14 16 8 H 0.05 1.33 7.74 -52.48 -0.41 0.93 16 9 C 0.03 0.74 4.86 -27.88 -0.14 0.61 16 10 C -0.10 -1.74 4.48 -26.73 -0.12 -1.86 16 11 C 0.08 1.12 2.28 -68.87 -0.16 0.96 16 12 H 0.10 1.37 6.48 -51.93 -0.34 1.03 16 13 N -0.81 -12.52 8.44 -5.65 -0.05 -12.57 16 14 C 0.48 6.80 6.88 -10.99 -0.08 6.72 16 15 O -0.55 -9.22 15.45 5.55 0.09 -9.14 16 16 N -0.61 -6.93 2.78 -174.31 -0.48 -7.42 16 17 C 0.08 0.74 5.37 -4.46 -0.02 0.72 16 18 C 0.09 0.74 5.97 -4.00 -0.02 0.72 16 19 N -0.72 -6.63 5.30 -60.30 -0.32 -6.95 16 20 C 0.52 6.07 7.11 -11.25 -0.08 5.99 16 21 O -0.55 -8.58 17.91 5.56 0.10 -8.48 16 22 C -0.16 -1.59 5.60 -27.45 -0.15 -1.75 16 23 C 0.12 1.23 6.09 -4.04 -0.02 1.21 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.04 0.92 7.75 -51.93 -0.40 0.52 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.87 6.31 -51.93 -0.33 0.54 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.35 5.53 8.58 -39.29 -0.34 5.19 16 30 H 0.33 4.50 9.06 -39.29 -0.36 4.15 16 31 H 0.12 1.13 4.74 -51.93 -0.25 0.88 16 32 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.84 6.75 -51.93 -0.35 0.49 16 35 H 0.40 3.18 8.91 -40.82 -0.36 2.82 16 36 H 0.11 1.01 8.13 -51.92 -0.42 0.59 16 37 H 0.10 0.99 7.08 -51.93 -0.37 0.62 16 38 H 0.07 0.71 7.95 -51.93 -0.41 0.29 16 39 H 0.11 1.24 6.78 -51.93 -0.35 0.89 16 LS Contribution 314.33 15.07 4.74 4.74 Total: -1.00 -32.94 314.33 -6.92 -39.87 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.50 Total: 8.43 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.21 Total: 0.71 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.12 Total: -51.90 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.19 Total: -17.62 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.94 -6.92 -39.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709481460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.546 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds