Wall clock time and date at job start Mon Mar 30 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00224 * 2 1 4 4 H 1.48506 * 109.47109 * 270.00685 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00061 * 3 2 1 6 6 H 1.48494 * 109.47293 * 150.00314 * 3 2 1 7 7 C 1.37875 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46846 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47398 * 305.00335 * 11 10 9 13 13 N 1.46896 * 109.47053 * 65.00581 * 11 10 9 14 14 C 1.50703 * 109.46912 * 185.00257 * 11 10 9 15 15 O 1.21285 * 119.99889 * 260.00048 * 14 11 10 16 16 N 1.34769 * 119.99927 * 80.00142 * 14 11 10 17 17 C 1.46068 * 118.73414 * 359.73437 * 16 14 11 18 18 C 1.52633 * 110.00899 * 243.80549 * 17 16 14 19 19 N 1.46919 * 108.94211 * 278.59445 * 18 17 16 20 20 C 1.33632 * 120.62812 * 71.87646 * 19 18 17 21 21 O 1.21275 * 119.77679 * 179.72356 * 20 19 18 22 22 C 1.51198 * 120.45399 * 359.69889 * 20 19 18 23 23 C 1.46161 * 118.72992 * 179.97438 * 16 14 11 24 24 H 0.96998 * 120.00041 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47229 * 60.00097 * 9 7 2 26 26 H 1.09001 * 109.47286 * 299.99924 * 9 7 2 27 27 H 1.09002 * 109.46824 * 60.00111 * 10 9 7 28 28 H 1.08991 * 109.47210 * 300.00195 * 10 9 7 29 29 H 1.00900 * 111.00550 * 59.99664 * 13 11 10 30 30 H 1.00896 * 111.00310 * 183.95250 * 13 11 10 31 31 H 1.09001 * 109.43103 * 3.91182 * 17 16 14 32 32 H 1.09001 * 109.42993 * 123.75993 * 17 16 14 33 33 H 1.08997 * 109.57791 * 158.72209 * 18 17 16 34 34 H 1.09005 * 109.57267 * 38.46469 * 18 17 16 35 35 H 0.97004 * 119.68772 * 251.89251 * 19 18 17 36 36 H 1.09010 * 109.61137 * 169.03627 * 22 20 19 37 37 H 1.08999 * 109.61243 * 48.52175 * 22 20 19 38 38 H 1.09002 * 109.46266 * 236.32170 * 23 16 14 39 39 H 1.08996 * 109.46734 * 356.29363 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 1 0.7890 -5.0072 0.8414 13 7 0.7272 -5.1183 -1.2556 14 6 2.4550 -6.1299 0.1215 15 8 2.7857 -6.7533 -0.8649 16 7 2.9591 -6.4591 1.3272 17 6 2.5463 -5.6860 2.4957 18 6 3.7486 -4.9594 3.0926 19 7 4.5006 -5.8965 3.9382 20 6 5.2187 -6.8816 3.3908 21 8 5.8376 -7.6433 4.1032 22 6 5.2645 -7.0535 1.8893 23 6 3.9019 -7.5726 1.4142 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8712 -3.6040 -0.8922 29 1 1.3462 -5.1025 -2.0523 30 1 0.1628 -5.9546 -1.2528 31 1 1.7940 -4.9550 2.1996 32 1 2.1241 -6.3571 3.2438 33 1 3.4051 -4.1187 3.6952 34 1 4.3906 -4.5956 2.2903 35 1 4.4754 -5.7993 4.9030 36 1 6.0414 -7.7717 1.6268 37 1 5.4755 -6.0938 1.4175 38 1 3.5272 -8.3111 2.1230 39 1 4.0108 -8.0339 0.4327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709481460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:36 Heat of formation + Delta-G solvation = -101.642774 kcal Electronic energy + Delta-G solvation = -21417.074616 eV Core-core repulsion = 18165.111552 eV Total energy + Delta-G solvation = -3251.963063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88432 -40.53671 -37.74091 -36.91778 -35.42754 -34.80003 -32.96457 -31.87304 -29.57725 -28.26863 -26.26440 -25.02883 -23.80044 -22.13696 -20.88633 -20.19263 -18.88414 -18.28086 -18.18915 -17.62915 -17.34440 -16.79764 -16.40369 -16.34025 -15.64960 -15.29962 -15.14183 -14.80669 -14.26096 -14.00700 -13.89042 -13.73420 -13.44051 -13.35394 -13.20380 -12.77960 -12.65875 -12.58916 -12.43074 -12.12579 -11.68666 -11.56412 -11.16963 -10.98299 -10.93153 -10.44735 -10.43176 -9.74487 -9.58122 -8.08675 -6.17623 1.43184 1.45748 1.47582 1.50857 1.56509 1.87925 2.27459 2.48543 3.25628 3.33809 3.47235 3.70822 3.91069 3.92290 4.05025 4.07953 4.19307 4.21875 4.33932 4.39116 4.68888 4.71133 4.80998 4.83507 4.96981 5.01188 5.31746 5.39686 5.64568 5.80384 5.92236 6.05803 6.07675 6.16204 6.26390 6.36382 6.53838 7.01715 7.02335 7.14784 7.50703 9.02279 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.005090 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.886093 B = 5499.303072 C = 6450.313401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.040 3.960 10 C -0.083 4.083 11 C 0.082 3.918 12 H 0.116 0.884 13 N -0.821 5.821 14 C 0.486 3.514 15 O -0.577 6.577 16 N -0.604 5.604 17 C 0.076 3.924 18 C 0.089 3.911 19 N -0.710 5.710 20 C 0.518 3.482 21 O -0.596 6.596 22 C -0.149 4.149 23 C 0.119 3.881 24 H 0.260 0.740 25 H 0.002 0.998 26 H 0.000 1.000 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.345 0.655 30 H 0.346 0.654 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.080 0.920 35 H 0.409 0.591 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 -11.996 7.006 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.575 4.575 8 H 0.076 0.924 9 C 0.002 3.998 10 C -0.121 4.121 11 C -0.033 4.033 12 H 0.133 0.867 13 N -0.349 5.349 14 C 0.274 3.726 15 O -0.457 6.457 16 N -0.337 5.337 17 C -0.047 4.047 18 C -0.036 4.036 19 N -0.361 5.361 20 C 0.306 3.694 21 O -0.478 6.478 22 C -0.190 4.190 23 C -0.004 4.004 24 H 0.069 0.931 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.150 0.850 34 H 0.098 0.902 35 H 0.247 0.753 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.665 -11.926 6.874 14.885 hybrid contribution 0.728 0.170 0.052 0.749 sum 6.393 -11.756 6.926 15.068 Atomic orbital electron populations 1.70093 1.07555 1.27316 1.52031 1.25798 0.95527 1.02664 0.95242 0.85653 0.78972 0.79566 0.78053 1.20716 1.21146 1.18563 1.21723 0.93387 0.92562 1.49824 0.92424 1.18828 0.93856 0.91139 0.95946 1.21459 0.97766 0.91637 1.01231 1.21763 0.93814 0.92265 0.95495 0.86692 1.58999 1.27245 1.45280 1.03406 1.22591 0.81910 0.85331 0.82776 1.90638 1.62007 1.55111 1.37896 1.48001 1.44717 1.33111 1.07858 1.22359 0.98037 0.96667 0.87666 1.22259 0.92909 0.92211 0.96211 1.45930 1.48711 1.30235 1.11240 1.20799 0.77359 0.79669 0.91618 1.90734 1.46370 1.45886 1.64773 1.22358 1.00089 1.05317 0.91209 1.21331 0.86814 0.88608 1.03651 0.93102 0.97999 0.98117 0.90441 0.94108 0.84170 0.84106 0.86747 0.88612 0.84984 0.90159 0.75340 0.86757 0.88288 0.90103 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.96 13.29 21.45 0.28 -53.68 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.54 -28.05 9.11 25.60 0.23 -27.81 16 8 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 1.85 4.86 29.85 0.15 2.00 16 10 C -0.08 -2.86 4.48 30.60 0.14 -2.73 16 11 C 0.08 2.35 2.28 44.17 0.10 2.45 16 12 H 0.12 2.95 6.48 -2.39 -0.02 2.93 16 13 N -0.82 -25.21 8.44 -171.80 -1.45 -26.66 16 14 C 0.49 13.01 6.88 87.66 0.60 13.61 16 15 O -0.58 -18.87 15.45 -3.05 -0.05 -18.91 16 16 N -0.60 -12.33 2.78 -823.78 -2.29 -14.62 16 17 C 0.08 1.18 5.37 86.34 0.46 1.65 16 18 C 0.09 1.24 5.97 86.18 0.51 1.75 16 19 N -0.71 -11.19 5.30 -463.71 -2.46 -13.65 16 20 C 0.52 11.17 7.11 87.99 0.63 11.79 16 21 O -0.60 -17.80 17.91 -3.02 -0.05 -17.85 16 22 C -0.15 -2.77 5.60 30.13 0.17 -2.60 16 23 C 0.12 2.30 6.09 86.56 0.53 2.83 16 24 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.00 0.08 7.75 -2.39 -0.02 0.06 16 26 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 27 H 0.08 2.30 6.31 -2.39 -0.02 2.28 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.34 10.98 8.58 -89.69 -0.77 10.21 16 30 H 0.35 9.11 9.06 -89.70 -0.81 8.30 16 31 H 0.11 1.89 4.74 -2.39 -0.01 1.88 16 32 H 0.10 1.22 8.10 -2.39 -0.02 1.20 16 33 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.31 6.75 -2.38 -0.02 1.29 16 35 H 0.41 5.44 8.91 -92.71 -0.83 4.61 16 36 H 0.11 1.99 8.13 -2.38 -0.02 1.97 16 37 H 0.10 1.82 7.08 -2.39 -0.02 1.81 16 38 H 0.08 1.44 7.95 -2.39 -0.02 1.42 16 39 H 0.10 2.15 6.78 -2.39 -0.02 2.14 16 Total: -1.00 -70.49 314.33 -1.31 -71.80 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -1.31 Total: 25.70 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 3.98 Total: 3.71 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -5.91 Total: -108.61 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.10 Total: -36.77 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -70.49 -1.31 -71.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709481460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.844 kcal (2) G-P(sol) polarization free energy of solvation -70.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds