Wall clock time and date at job start Mon Mar 30 2020 05:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99754 * 2 1 4 4 H 1.48500 * 109.47173 * 270.00576 * 3 2 1 5 5 H 1.48506 * 109.47063 * 30.00089 * 3 2 1 6 6 H 1.48498 * 109.47038 * 150.00282 * 3 2 1 7 7 C 1.37876 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47137 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47139 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47396 * 54.99706 * 11 10 9 13 13 N 1.46905 * 109.47084 * 294.99736 * 11 10 9 14 14 C 1.50700 * 109.47064 * 174.99796 * 11 10 9 15 15 O 1.21277 * 119.99987 * 99.99773 * 14 11 10 16 16 N 1.34777 * 119.99986 * 280.00094 * 14 11 10 17 17 C 1.46069 * 118.73085 * 359.73259 * 16 14 11 18 18 C 1.52632 * 110.00582 * 243.80583 * 17 16 14 19 19 N 1.46915 * 108.94539 * 278.59645 * 18 17 16 20 20 C 1.33639 * 120.62639 * 71.87503 * 19 18 17 21 21 O 1.21276 * 119.77081 * 179.72714 * 20 19 18 22 22 C 1.51197 * 120.45508 * 359.70307 * 20 19 18 23 23 C 1.46159 * 118.72873 * 179.97438 * 16 14 11 24 24 H 0.96998 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47324 * 59.99770 * 9 7 2 26 26 H 1.09004 * 109.47053 * 299.99394 * 9 7 2 27 27 H 1.08995 * 109.46766 * 59.99702 * 10 9 7 28 28 H 1.09001 * 109.46844 * 300.00032 * 10 9 7 29 29 H 1.00901 * 110.99869 * 300.00384 * 13 11 10 30 30 H 1.00896 * 110.99543 * 63.95506 * 13 11 10 31 31 H 1.08997 * 109.43248 * 3.91187 * 17 16 14 32 32 H 1.09000 * 109.42760 * 123.75857 * 17 16 14 33 33 H 1.09004 * 109.57390 * 158.72389 * 18 17 16 34 34 H 1.09004 * 109.57321 * 38.46862 * 18 17 16 35 35 H 0.96997 * 119.68704 * 251.90288 * 19 18 17 36 36 H 1.09001 * 109.60651 * 169.03511 * 22 20 19 37 37 H 1.08996 * 109.60842 * 48.51822 * 22 20 19 38 38 H 1.09001 * 109.46210 * 236.32115 * 23 16 14 39 39 H 1.08997 * 109.46643 * 356.29112 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 1 0.7887 -5.0069 -0.8441 13 7 0.7282 -5.1187 1.2530 14 6 2.4552 -6.1298 -0.1256 15 8 2.7867 -6.7534 0.8603 16 7 2.9586 -6.4586 -1.3318 17 6 2.5359 -5.6926 -2.5016 18 6 1.7794 -6.5960 -3.4718 19 7 2.7499 -7.3504 -4.2765 20 6 3.4656 -8.3380 -3.7304 21 8 4.2589 -8.9539 -4.4103 22 6 3.2936 -8.6925 -2.2706 23 6 3.9022 -7.5713 -1.4197 24 1 -0.4851 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8881 27 1 2.8714 -3.6046 0.8890 28 1 2.8728 -3.6039 -0.8909 29 1 1.3478 -5.1031 2.0492 30 1 0.0234 -4.4007 1.3290 31 1 1.8847 -4.8778 -2.1855 32 1 3.4127 -5.2818 -3.0021 33 1 1.1562 -5.9874 -4.1271 34 1 1.1520 -7.2893 -2.9116 35 1 2.8726 -7.1292 -5.2129 36 1 3.8058 -9.6312 -2.0594 37 1 2.2328 -8.7918 -2.0409 38 1 4.8280 -7.2268 -1.8807 39 1 4.1134 -7.9483 -0.4190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709481463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:39 Heat of formation + Delta-G solvation = -76.236710 kcal Electronic energy + Delta-G solvation = -21233.206661 eV Core-core repulsion = 17982.345288 eV Total energy + Delta-G solvation = -3250.861373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83104 -39.43798 -36.69485 -35.74499 -34.48695 -32.97025 -32.05212 -29.97747 -28.72486 -26.90020 -24.95109 -24.03244 -22.70040 -20.55026 -20.09778 -19.12167 -17.90502 -17.32360 -16.79264 -16.39912 -16.12181 -15.50757 -14.79155 -14.57637 -14.46801 -14.39452 -13.97800 -13.45102 -13.33182 -12.90860 -12.82478 -12.48104 -12.34989 -12.20109 -11.95520 -11.77109 -11.59291 -11.12477 -10.98916 -10.73971 -10.08358 -10.03152 -9.97270 -9.60247 -9.34325 -9.26604 -8.76309 -8.50518 -8.28023 -6.15148 -4.18529 2.39143 2.74733 2.85191 3.03403 3.22557 3.30107 3.33203 4.21731 4.33722 4.49650 4.68870 4.79001 4.82943 4.87940 5.00739 5.07917 5.17112 5.21331 5.33410 5.47322 5.59768 5.62623 5.69053 5.70913 6.16441 6.36332 6.43505 6.53542 6.76772 6.97313 7.19202 7.42310 7.47667 7.53582 7.80959 7.82199 7.97903 8.23155 8.27083 8.87369 9.47069 10.95596 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.004359 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.440450 B = 6421.674144 C = 6980.069510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.141 4.141 11 C 0.072 3.928 12 H 0.098 0.902 13 N -0.831 5.831 14 C 0.524 3.476 15 O -0.532 6.532 16 N -0.617 5.617 17 C 0.078 3.922 18 C 0.089 3.911 19 N -0.724 5.724 20 C 0.519 3.481 21 O -0.553 6.553 22 C -0.155 4.155 23 C 0.118 3.882 24 H 0.262 0.738 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.346 0.654 30 H 0.355 0.645 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.401 0.599 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.019 -12.521 -6.422 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.181 4.181 11 C -0.043 4.043 12 H 0.116 0.884 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.407 6.407 16 N -0.352 5.352 17 C -0.046 4.046 18 C -0.037 4.037 19 N -0.377 5.377 20 C 0.305 3.695 21 O -0.431 6.431 22 C -0.196 4.196 23 C -0.005 4.005 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.237 0.763 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.203 -13.831 -6.301 15.357 hybrid contribution 0.789 2.178 -0.319 2.338 sum 2.992 -11.653 -6.620 13.732 Atomic orbital electron populations 1.69939 1.06010 1.26865 1.50323 1.24996 0.94852 0.99290 0.95033 0.86596 0.79898 0.83369 0.78179 1.20594 1.21124 1.19882 1.21162 0.93021 0.90852 1.51299 0.92728 1.19100 0.93641 0.91068 0.97389 1.22451 0.99985 0.93886 1.01732 1.21553 0.94703 0.92372 0.95646 0.88377 1.58771 1.18449 1.55889 1.03177 1.21074 0.80931 0.84433 0.82289 1.90629 1.60001 1.53375 1.36740 1.47805 1.45903 1.33732 1.07740 1.22195 1.01045 0.94647 0.86674 1.22165 0.91183 0.95533 0.94781 1.45966 1.41601 1.35704 1.14418 1.20635 0.79565 0.79020 0.90243 1.90751 1.36496 1.52037 1.63817 1.22418 1.04500 1.01229 0.91429 1.21295 0.91414 0.85702 1.02074 0.92831 0.96336 0.96345 0.92533 0.92386 0.84065 0.82971 0.86699 0.90141 0.87793 0.89852 0.76251 0.87409 0.88650 0.91037 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -13.74 9.11 -34.44 -0.31 -14.05 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.57 4.74 -27.88 -0.13 0.43 16 10 C -0.14 -2.53 4.42 -26.73 -0.12 -2.65 16 11 C 0.07 1.10 2.34 -68.86 -0.16 0.94 16 12 H 0.10 1.34 6.61 -51.93 -0.34 1.00 16 13 N -0.83 -13.15 8.94 -5.65 -0.05 -13.20 16 14 C 0.52 7.88 6.89 -10.99 -0.08 7.80 16 15 O -0.53 -9.59 15.45 5.56 0.09 -9.50 16 16 N -0.62 -7.28 2.78 -174.31 -0.48 -7.77 16 17 C 0.08 0.75 5.38 -4.46 -0.02 0.72 16 18 C 0.09 0.64 6.46 -4.00 -0.03 0.62 16 19 N -0.72 -6.18 5.30 -60.30 -0.32 -6.50 16 20 C 0.52 5.84 7.11 -11.25 -0.08 5.76 16 21 O -0.55 -8.40 17.91 5.56 0.10 -8.30 16 22 C -0.15 -1.50 5.60 -27.46 -0.15 -1.66 16 23 C 0.12 1.30 6.09 -4.04 -0.02 1.27 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.99 6.96 -51.93 -0.36 0.63 16 29 H 0.35 5.64 8.58 -39.29 -0.34 5.31 16 30 H 0.35 5.63 7.55 -39.29 -0.30 5.34 16 31 H 0.12 1.17 4.55 -51.93 -0.24 0.93 16 32 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.62 7.04 -51.93 -0.37 0.25 16 35 H 0.40 2.98 8.91 -40.82 -0.36 2.61 16 36 H 0.11 0.97 8.13 -51.93 -0.42 0.55 16 37 H 0.10 0.87 7.08 -51.93 -0.37 0.51 16 38 H 0.07 0.77 7.95 -51.93 -0.41 0.35 16 39 H 0.11 1.30 6.78 -51.93 -0.35 0.95 16 LS Contribution 313.71 15.07 4.73 4.73 Total: -1.00 -32.41 313.71 -6.88 -39.29 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.45 Total: 9.26 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.21 Total: 0.70 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.12 Total: -51.75 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.19 Total: -17.81 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.41 -6.88 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709481463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.949 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds