Wall clock time and date at job start Mon Mar 30 2020 05:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99754 * 2 1 4 4 H 1.48500 * 109.47173 * 270.00576 * 3 2 1 5 5 H 1.48506 * 109.47063 * 30.00089 * 3 2 1 6 6 H 1.48498 * 109.47038 * 150.00282 * 3 2 1 7 7 C 1.37876 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47137 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47139 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47396 * 54.99706 * 11 10 9 13 13 N 1.46905 * 109.47084 * 294.99736 * 11 10 9 14 14 C 1.50700 * 109.47064 * 174.99796 * 11 10 9 15 15 O 1.21277 * 119.99987 * 99.99773 * 14 11 10 16 16 N 1.34777 * 119.99986 * 280.00094 * 14 11 10 17 17 C 1.46069 * 118.73085 * 359.73259 * 16 14 11 18 18 C 1.52632 * 110.00582 * 243.80583 * 17 16 14 19 19 N 1.46915 * 108.94539 * 278.59645 * 18 17 16 20 20 C 1.33639 * 120.62639 * 71.87503 * 19 18 17 21 21 O 1.21276 * 119.77081 * 179.72714 * 20 19 18 22 22 C 1.51197 * 120.45508 * 359.70307 * 20 19 18 23 23 C 1.46159 * 118.72873 * 179.97438 * 16 14 11 24 24 H 0.96998 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47324 * 59.99770 * 9 7 2 26 26 H 1.09004 * 109.47053 * 299.99394 * 9 7 2 27 27 H 1.08995 * 109.46766 * 59.99702 * 10 9 7 28 28 H 1.09001 * 109.46844 * 300.00032 * 10 9 7 29 29 H 1.00901 * 110.99869 * 300.00384 * 13 11 10 30 30 H 1.00896 * 110.99543 * 63.95506 * 13 11 10 31 31 H 1.08997 * 109.43248 * 3.91187 * 17 16 14 32 32 H 1.09000 * 109.42760 * 123.75857 * 17 16 14 33 33 H 1.09004 * 109.57390 * 158.72389 * 18 17 16 34 34 H 1.09004 * 109.57321 * 38.46862 * 18 17 16 35 35 H 0.96997 * 119.68704 * 251.90288 * 19 18 17 36 36 H 1.09001 * 109.60651 * 169.03511 * 22 20 19 37 37 H 1.08996 * 109.60842 * 48.51822 * 22 20 19 38 38 H 1.09001 * 109.46210 * 236.32115 * 23 16 14 39 39 H 1.08997 * 109.46643 * 356.29112 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 1 0.7887 -5.0069 -0.8441 13 7 0.7282 -5.1187 1.2530 14 6 2.4552 -6.1298 -0.1256 15 8 2.7867 -6.7534 0.8603 16 7 2.9586 -6.4586 -1.3318 17 6 2.5359 -5.6926 -2.5016 18 6 1.7794 -6.5960 -3.4718 19 7 2.7499 -7.3504 -4.2765 20 6 3.4656 -8.3380 -3.7304 21 8 4.2589 -8.9539 -4.4103 22 6 3.2936 -8.6925 -2.2706 23 6 3.9022 -7.5713 -1.4197 24 1 -0.4851 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8881 27 1 2.8714 -3.6046 0.8890 28 1 2.8728 -3.6039 -0.8909 29 1 1.3478 -5.1031 2.0492 30 1 0.0234 -4.4007 1.3290 31 1 1.8847 -4.8778 -2.1855 32 1 3.4127 -5.2818 -3.0021 33 1 1.1562 -5.9874 -4.1271 34 1 1.1520 -7.2893 -2.9116 35 1 2.8726 -7.1292 -5.2129 36 1 3.8058 -9.6312 -2.0594 37 1 2.2328 -8.7918 -2.0409 38 1 4.8280 -7.2268 -1.8807 39 1 4.1134 -7.9483 -0.4190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709481463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:38 Heat of formation + Delta-G solvation = -101.853877 kcal Electronic energy + Delta-G solvation = -21234.317505 eV Core-core repulsion = 17982.345288 eV Total energy + Delta-G solvation = -3251.972217 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81756 -40.48429 -37.69701 -37.16753 -35.38896 -34.84340 -32.97395 -31.65134 -29.56477 -28.30934 -26.31835 -25.12344 -23.87814 -22.05762 -20.92703 -20.19740 -19.07955 -18.31913 -18.18621 -17.56204 -17.27179 -16.57448 -16.36215 -15.89209 -15.67721 -15.54074 -14.97355 -14.74582 -14.67593 -14.16633 -13.78669 -13.69073 -13.51634 -13.34463 -13.20097 -12.89085 -12.75217 -12.58660 -12.48992 -12.41733 -11.77653 -11.67218 -11.26800 -10.95005 -10.71006 -10.52912 -10.39645 -9.72237 -9.59392 -8.19121 -6.28337 1.40636 1.42724 1.49751 1.51934 1.57603 1.85746 2.30475 2.41752 3.15221 3.35213 3.52548 3.76586 3.94042 3.94445 4.06793 4.13846 4.17302 4.24718 4.26552 4.40166 4.67905 4.68943 4.73725 4.85292 4.89613 4.98746 5.11952 5.43444 5.50913 5.69965 5.82914 5.84490 6.05558 6.18468 6.24498 6.29985 6.50535 6.87263 7.11613 7.17267 7.40833 8.91223 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.004359 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.440450 B = 6421.674144 C = 6980.069510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.124 4.124 11 C 0.080 3.920 12 H 0.120 0.880 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.566 6.566 16 N -0.607 5.607 17 C 0.072 3.928 18 C 0.094 3.906 19 N -0.712 5.712 20 C 0.517 3.483 21 O -0.597 6.597 22 C -0.145 4.145 23 C 0.120 3.880 24 H 0.263 0.737 25 H 0.010 0.990 26 H 0.002 0.998 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.342 0.658 30 H 0.353 0.647 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.409 0.591 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 -12.428 -7.499 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.163 4.163 11 C -0.035 4.035 12 H 0.137 0.863 13 N -0.362 5.362 14 C 0.313 3.687 15 O -0.444 6.444 16 N -0.341 5.341 17 C -0.051 4.051 18 C -0.031 4.031 19 N -0.363 5.363 20 C 0.304 3.696 21 O -0.479 6.479 22 C -0.186 4.186 23 C -0.003 4.003 24 H 0.072 0.928 25 H 0.028 0.972 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.155 0.845 34 H 0.107 0.893 35 H 0.246 0.754 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.217 -13.719 -7.417 15.752 hybrid contribution 0.771 2.167 -0.001 2.300 sum 2.988 -11.552 -7.418 14.050 Atomic orbital electron populations 1.70038 1.07298 1.27662 1.51411 1.25761 0.95634 1.02597 0.94870 0.85640 0.78638 0.79469 0.78457 1.19705 1.21026 1.19551 1.21608 0.93253 0.92551 1.50700 0.92978 1.18963 0.93943 0.91617 0.96062 1.22192 0.98886 0.93828 1.01439 1.21501 0.94846 0.91053 0.96139 0.86278 1.58794 1.18373 1.55644 1.03369 1.20941 0.80787 0.84150 0.82798 1.90620 1.61163 1.54556 1.38099 1.47839 1.45112 1.33642 1.07478 1.22390 1.01555 0.94930 0.86207 1.22264 0.90599 0.95451 0.94775 1.45941 1.40855 1.34595 1.14917 1.20847 0.79133 0.79055 0.90517 1.90737 1.38530 1.53771 1.64838 1.22335 1.05101 1.00916 0.90215 1.21312 0.91437 0.85760 1.01818 0.92781 0.97171 0.97993 0.94158 0.91297 0.84476 0.83144 0.86937 0.89641 0.84537 0.89333 0.75401 0.86730 0.87633 0.90685 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.74 13.29 21.45 0.28 -51.46 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.95 41.80 29.54 68.60 2.03 43.82 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -28.22 9.11 25.60 0.23 -27.98 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.03 1.41 4.74 29.85 0.14 1.55 16 10 C -0.12 -4.35 4.42 30.59 0.14 -4.21 16 11 C 0.08 2.32 2.34 44.17 0.10 2.43 16 12 H 0.12 2.98 6.61 -2.39 -0.02 2.97 16 13 N -0.83 -25.83 8.94 -171.79 -1.54 -27.37 16 14 C 0.52 15.10 6.89 87.66 0.60 15.70 16 15 O -0.57 -20.07 15.45 -3.02 -0.05 -20.12 16 16 N -0.61 -13.21 2.78 -823.79 -2.29 -15.50 16 17 C 0.07 1.19 5.38 86.34 0.46 1.65 16 18 C 0.09 1.04 6.46 86.18 0.56 1.60 16 19 N -0.71 -10.30 5.30 -463.71 -2.46 -12.76 16 20 C 0.52 10.75 7.11 87.99 0.63 11.37 16 21 O -0.60 -17.63 17.91 -3.02 -0.05 -17.68 16 22 C -0.14 -2.56 5.60 30.12 0.17 -2.40 16 23 C 0.12 2.45 6.09 86.56 0.53 2.98 16 24 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 2.25 6.96 -2.39 -0.02 2.24 16 29 H 0.34 11.16 8.58 -89.69 -0.77 10.39 16 30 H 0.35 11.13 7.55 -89.70 -0.68 10.45 16 31 H 0.11 1.97 4.55 -2.39 -0.01 1.96 16 32 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 33 H 0.14 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.99 7.04 -2.38 -0.02 0.97 16 35 H 0.41 5.01 8.91 -92.71 -0.83 4.19 16 36 H 0.11 1.91 8.13 -2.39 -0.02 1.89 16 37 H 0.11 1.68 7.08 -2.39 -0.02 1.66 16 38 H 0.07 1.51 7.95 -2.39 -0.02 1.49 16 39 H 0.10 2.29 6.78 -2.39 -0.02 2.27 16 Total: -1.00 -69.06 313.71 -1.22 -70.28 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -1.17 Total: 27.10 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 4.02 Total: 3.68 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -6.00 Total: -107.08 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.10 Total: -37.80 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -69.06 -1.22 -70.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709481463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.574 kcal (2) G-P(sol) polarization free energy of solvation -69.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds