Wall clock time and date at job start Mon Mar 30 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47180 * 304.99367 * 11 10 9 13 13 N 1.46897 * 109.47737 * 64.99704 * 11 10 9 14 14 C 1.50699 * 109.47021 * 184.99834 * 11 10 9 15 15 O 1.21276 * 120.00379 * 259.99394 * 14 11 10 16 16 N 1.34779 * 120.00097 * 79.99539 * 14 11 10 17 17 C 1.46504 * 120.00256 * 179.97438 * 16 14 11 18 18 C 1.53773 * 113.61588 * 252.49972 * 17 16 14 19 19 C 1.53784 * 87.08221 * 220.01874 * 18 17 16 20 20 C 1.50700 * 113.69018 * 270.87251 * 19 18 17 21 21 N 1.34777 * 120.00073 * 277.53774 * 20 19 18 22 22 O 1.21283 * 119.99693 * 97.53180 * 20 19 18 23 23 C 1.53775 * 87.08094 * 25.43156 * 19 18 17 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.00906 * 110.99511 * 59.99734 * 13 11 10 30 30 H 1.00894 * 111.00198 * 183.95553 * 13 11 10 31 31 H 0.97005 * 120.00286 * 359.97438 * 16 14 11 32 32 H 1.09000 * 112.84969 * 23.80678 * 17 16 14 33 33 H 1.09006 * 113.61694 * 334.56420 * 18 17 16 34 34 H 1.08997 * 113.61768 * 105.46892 * 18 17 16 35 35 H 1.08994 * 113.61493 * 139.98093 * 19 18 17 36 36 H 0.96992 * 119.99944 * 359.97438 * 21 20 19 37 37 H 0.96998 * 119.99820 * 179.97438 * 21 20 19 38 38 H 1.09000 * 113.61885 * 220.02337 * 23 19 18 39 39 H 1.09009 * 113.61392 * 89.11288 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 1 5.9187 -2.0488 -0.8235 13 7 6.0355 -2.0489 1.2741 14 6 6.0543 -4.0522 -0.1011 15 8 6.4240 -4.6495 0.8876 16 7 6.0933 -4.6545 -1.3061 17 6 6.5827 -6.0306 -1.4218 18 6 7.9692 -6.1382 -2.0780 19 6 7.4377 -7.3793 -2.8142 20 6 7.6394 -8.6658 -2.0557 21 7 8.8261 -9.3024 -2.1120 22 8 6.7339 -9.1283 -1.3945 23 6 6.0317 -6.7795 -2.6467 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 5.7083 -2.5764 2.0697 30 1 7.0420 -1.9783 1.2761 31 1 5.7974 -4.1770 -2.0969 32 1 6.4940 -6.5910 -0.4911 33 1 8.2046 -5.3051 -2.7405 34 1 8.7703 -6.3586 -1.3726 35 1 7.7639 -7.4444 -3.8521 36 1 9.5501 -8.9327 -2.6410 37 1 8.9560 -10.1302 -1.6235 38 1 5.2685 -7.5177 -2.4002 39 1 5.7373 -6.1217 -3.4646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716738866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:44 Heat of formation + Delta-G solvation = -70.895446 kcal Electronic energy + Delta-G solvation = -20346.803640 eV Core-core repulsion = 17096.173881 eV Total energy + Delta-G solvation = -3250.629759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96330 -39.58021 -37.61977 -35.27452 -34.06371 -33.34894 -32.73050 -30.46821 -27.32779 -26.07551 -25.88076 -23.54868 -21.87628 -20.52941 -19.98954 -19.49445 -17.55250 -17.43652 -17.17156 -16.60651 -16.39039 -15.64608 -15.14613 -14.95169 -14.56463 -14.21436 -14.06875 -13.62397 -13.31995 -12.85403 -12.61574 -12.52036 -12.41627 -12.25163 -11.63485 -11.08391 -10.99434 -10.91878 -10.84364 -10.37510 -10.24087 -10.08493 -9.89512 -9.75779 -9.55320 -9.08810 -9.06613 -8.48495 -8.36751 -5.97364 -3.94903 2.23398 2.70605 3.08598 3.25176 3.37098 3.45085 3.53259 4.07309 4.13476 4.45447 4.50928 4.53246 4.78883 4.87639 5.02239 5.24081 5.29596 5.36585 5.40443 5.43205 5.55440 5.70648 5.75192 5.94946 6.32102 6.37288 6.46236 6.51892 6.90150 6.91603 7.27348 7.38474 7.54550 7.62467 7.68619 7.88893 7.88942 8.28672 8.60487 9.07779 9.65589 11.16202 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.003378 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.287394 B = 8287.588262 C = 8601.658816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.521 4.521 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.088 4.088 11 C 0.075 3.925 12 H 0.098 0.902 13 N -0.811 5.811 14 C 0.484 3.516 15 O -0.551 6.551 16 N -0.720 5.720 17 C 0.122 3.878 18 C -0.135 4.135 19 C -0.140 4.140 20 C 0.533 3.467 21 N -0.855 5.855 22 O -0.534 6.534 23 C -0.127 4.127 24 H 0.262 0.738 25 H 0.008 0.992 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.350 0.650 30 H 0.334 0.666 31 H 0.403 0.597 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.402 0.598 37 H 0.402 0.598 38 H 0.090 0.910 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.332 -14.056 -9.098 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.126 4.126 11 C -0.041 4.041 12 H 0.116 0.884 13 N -0.339 5.339 14 C 0.270 3.730 15 O -0.428 6.428 16 N -0.371 5.371 17 C 0.017 3.983 18 C -0.175 4.175 19 C -0.162 4.162 20 C 0.317 3.683 21 N -0.418 5.418 22 O -0.410 6.410 23 C -0.166 4.166 24 H 0.071 0.929 25 H 0.026 0.974 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.238 0.762 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.230 0.770 37 H 0.233 0.767 38 H 0.109 0.891 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 20.304 -13.842 -8.181 25.899 hybrid contribution 1.219 -0.107 -0.487 1.317 sum 21.523 -13.949 -8.667 27.073 Atomic orbital electron populations 1.69927 1.06375 1.26801 1.51514 1.25024 0.94698 0.99226 0.94611 0.86766 0.80720 0.83443 0.78356 1.20536 1.21641 1.18399 1.21198 0.89785 0.94349 1.50581 0.91295 1.19485 0.96322 0.91210 0.97134 1.21469 0.88003 1.01510 1.01617 1.21865 0.99405 0.87812 0.95033 0.88440 1.59033 1.15303 1.56128 1.03461 1.22677 0.76552 0.90994 0.82773 1.90655 1.48572 1.66686 1.36902 1.46129 1.66266 1.14441 1.10266 1.22530 0.92930 0.83425 0.99453 1.23430 0.98605 0.95978 0.99443 1.22239 1.00742 0.92601 1.00661 1.20131 0.82188 0.85296 0.80656 1.43815 1.14962 1.28924 1.54111 1.90785 1.41706 1.67170 1.41294 1.23249 0.95678 0.99602 0.98053 0.92858 0.97369 0.94800 0.92204 0.92149 0.83589 0.85398 0.76173 0.86527 0.88421 0.90765 0.87358 0.77024 0.76729 0.89101 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.39 13.96 55.43 0.77 -27.62 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 9 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 10 C -0.09 -1.70 4.78 -26.74 -0.13 -1.83 16 11 C 0.07 1.17 3.15 -68.87 -0.22 0.95 16 12 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 13 N -0.81 -12.83 8.44 -5.66 -0.05 -12.88 16 14 C 0.48 7.36 7.07 -10.99 -0.08 7.28 16 15 O -0.55 -10.12 15.85 5.56 0.09 -10.04 16 16 N -0.72 -8.46 5.35 -53.02 -0.28 -8.75 16 17 C 0.12 1.36 3.89 -67.12 -0.26 1.10 16 18 C -0.14 -1.04 7.46 -25.92 -0.19 -1.23 16 19 C -0.14 -0.99 4.34 -90.96 -0.39 -1.38 16 20 C 0.53 4.91 7.36 -10.98 -0.08 4.83 16 21 N -0.85 -4.42 8.87 31.22 0.28 -4.14 16 22 O -0.53 -7.55 16.59 5.55 0.09 -7.45 16 23 C -0.13 -1.14 7.20 -25.92 -0.19 -1.32 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.01 0.19 7.58 -51.93 -0.39 -0.21 16 26 H 0.03 0.83 6.80 -51.93 -0.35 0.48 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.35 5.75 8.58 -39.29 -0.34 5.41 16 30 H 0.33 4.52 9.06 -39.30 -0.36 4.17 16 31 H 0.40 3.78 8.73 -40.82 -0.36 3.43 16 32 H 0.12 1.72 7.40 -51.93 -0.38 1.34 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.40 0.82 8.83 -40.82 -0.36 0.46 16 37 H 0.40 1.84 8.93 -40.82 -0.36 1.47 16 38 H 0.09 1.00 7.43 -51.93 -0.39 0.61 16 39 H 0.10 0.67 8.12 -51.92 -0.42 0.24 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -37.03 328.16 -6.74 -43.77 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.83 Total: 10.12 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.08 Total: -5.29 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.72 Total: -53.39 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.18 Total: -17.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -37.03 -6.74 -43.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716738866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.125 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds