Wall clock time and date at job start Mon Mar 30 2020 05:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47180 * 304.99367 * 11 10 9 13 13 N 1.46897 * 109.47737 * 64.99704 * 11 10 9 14 14 C 1.50699 * 109.47021 * 184.99834 * 11 10 9 15 15 O 1.21276 * 120.00379 * 259.99394 * 14 11 10 16 16 N 1.34779 * 120.00097 * 79.99539 * 14 11 10 17 17 C 1.46504 * 120.00256 * 179.97438 * 16 14 11 18 18 C 1.53773 * 113.61588 * 252.49972 * 17 16 14 19 19 C 1.53784 * 87.08221 * 220.01874 * 18 17 16 20 20 C 1.50700 * 113.69018 * 270.87251 * 19 18 17 21 21 N 1.34777 * 120.00073 * 277.53774 * 20 19 18 22 22 O 1.21283 * 119.99693 * 97.53180 * 20 19 18 23 23 C 1.53775 * 87.08094 * 25.43156 * 19 18 17 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.00906 * 110.99511 * 59.99734 * 13 11 10 30 30 H 1.00894 * 111.00198 * 183.95553 * 13 11 10 31 31 H 0.97005 * 120.00286 * 359.97438 * 16 14 11 32 32 H 1.09000 * 112.84969 * 23.80678 * 17 16 14 33 33 H 1.09006 * 113.61694 * 334.56420 * 18 17 16 34 34 H 1.08997 * 113.61768 * 105.46892 * 18 17 16 35 35 H 1.08994 * 113.61493 * 139.98093 * 19 18 17 36 36 H 0.96992 * 119.99944 * 359.97438 * 21 20 19 37 37 H 0.96998 * 119.99820 * 179.97438 * 21 20 19 38 38 H 1.09000 * 113.61885 * 220.02337 * 23 19 18 39 39 H 1.09009 * 113.61392 * 89.11288 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 1 5.9187 -2.0488 -0.8235 13 7 6.0355 -2.0489 1.2741 14 6 6.0543 -4.0522 -0.1011 15 8 6.4240 -4.6495 0.8876 16 7 6.0933 -4.6545 -1.3061 17 6 6.5827 -6.0306 -1.4218 18 6 7.9692 -6.1382 -2.0780 19 6 7.4377 -7.3793 -2.8142 20 6 7.6394 -8.6658 -2.0557 21 7 8.8261 -9.3024 -2.1120 22 8 6.7339 -9.1283 -1.3945 23 6 6.0317 -6.7795 -2.6467 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 5.7083 -2.5764 2.0697 30 1 7.0420 -1.9783 1.2761 31 1 5.7974 -4.1770 -2.0969 32 1 6.4940 -6.5910 -0.4911 33 1 8.2046 -5.3051 -2.7405 34 1 8.7703 -6.3586 -1.3726 35 1 7.7639 -7.4444 -3.8521 36 1 9.5501 -8.9327 -2.6410 37 1 8.9560 -10.1302 -1.6235 38 1 5.2685 -7.5177 -2.4002 39 1 5.7373 -6.1217 -3.4646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716738866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:43 Heat of formation + Delta-G solvation = -104.378484 kcal Electronic energy + Delta-G solvation = -20348.255573 eV Core-core repulsion = 17096.173881 eV Total energy + Delta-G solvation = -3252.081692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77142 -40.66966 -38.47486 -36.78493 -34.79501 -34.75391 -34.28567 -32.27415 -28.70729 -27.07174 -26.72240 -24.99781 -22.80764 -22.08996 -21.28234 -20.25870 -18.95322 -18.26358 -18.19227 -17.99204 -17.27081 -16.92849 -16.30253 -15.98888 -15.83295 -15.62448 -15.20751 -14.96116 -14.68912 -14.29330 -13.99029 -13.58085 -13.42687 -13.28089 -13.04931 -12.78619 -12.51356 -11.98644 -11.83087 -11.73210 -11.64324 -11.58395 -11.28775 -11.10680 -10.98153 -10.69818 -10.69088 -10.05603 -9.64248 -8.23851 -6.27483 1.41225 1.45338 1.49904 1.55401 1.59516 2.23308 2.43305 2.54808 3.12732 3.40626 3.44523 3.57355 3.75105 3.88651 3.91023 4.10881 4.28795 4.29382 4.54900 4.71496 4.72545 4.81367 4.85589 4.89156 5.01428 5.12897 5.16313 5.50500 5.54489 5.66899 5.75671 5.86488 6.07740 6.33798 6.44656 6.46960 6.57005 6.81598 7.19581 7.33135 7.37146 8.93298 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.003378 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.287394 B = 8287.588262 C = 8601.658816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.243 1.243 7 C -0.533 4.533 8 H 0.025 0.975 9 C 0.004 3.996 10 C -0.080 4.080 11 C 0.086 3.914 12 H 0.127 0.873 13 N -0.819 5.819 14 C 0.484 3.516 15 O -0.589 6.589 16 N -0.702 5.702 17 C 0.102 3.898 18 C -0.116 4.116 19 C -0.126 4.126 20 C 0.523 3.477 21 N -0.834 5.834 22 O -0.596 6.596 23 C -0.125 4.125 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.344 0.656 30 H 0.349 0.651 31 H 0.418 0.582 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.152 0.848 36 H 0.420 0.580 37 H 0.406 0.594 38 H 0.061 0.939 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.559 -12.815 -11.455 29.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.571 4.571 8 H 0.044 0.956 9 C -0.034 4.034 10 C -0.119 4.119 11 C -0.030 4.030 12 H 0.145 0.855 13 N -0.348 5.348 14 C 0.270 3.730 15 O -0.469 6.469 16 N -0.354 5.354 17 C -0.003 4.003 18 C -0.155 4.155 19 C -0.147 4.147 20 C 0.308 3.692 21 N -0.397 5.397 22 O -0.476 6.476 23 C -0.163 4.163 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.256 0.744 32 H 0.089 0.911 33 H 0.146 0.854 34 H 0.089 0.911 35 H 0.170 0.830 36 H 0.252 0.748 37 H 0.237 0.763 38 H 0.080 0.920 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 23.608 -12.621 -10.610 28.796 hybrid contribution 0.162 -0.623 0.251 0.691 sum 23.770 -13.244 -10.359 29.116 Atomic orbital electron populations 1.70093 1.08510 1.28079 1.53147 1.26063 0.95583 1.03763 0.94154 0.85581 0.79535 0.77712 0.79344 1.18650 1.21685 1.16676 1.21593 0.92668 0.92807 1.50044 0.95638 1.19364 0.92708 0.93875 0.97442 1.21268 0.91055 0.98731 1.00827 1.21691 0.96424 0.88780 0.96115 0.85500 1.59031 1.16538 1.55961 1.03262 1.22524 0.76499 0.90735 0.83247 1.90647 1.50561 1.67334 1.38376 1.46010 1.64986 1.14613 1.09748 1.22638 0.96472 0.82522 0.98687 1.23368 0.95875 0.97026 0.99210 1.22204 0.99070 0.90989 1.02444 1.20656 0.82343 0.86072 0.80128 1.43681 1.14278 1.28507 1.53239 1.90768 1.43913 1.68922 1.44014 1.23293 0.96228 0.99177 0.97645 0.92661 0.95530 0.95315 0.94740 0.91480 0.84312 0.83761 0.74397 0.91088 0.85411 0.91108 0.83018 0.74809 0.76304 0.92006 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.27 13.96 21.45 0.30 -60.97 16 2 C 0.00 0.02 5.47 84.66 0.46 0.48 16 3 Si 0.96 44.71 27.47 68.60 1.88 46.59 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.24 -10.69 6.54 99.48 0.65 -10.04 16 7 C -0.53 -31.15 9.66 25.60 0.25 -30.91 16 8 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 9 C 0.00 0.17 3.93 29.85 0.12 0.28 16 10 C -0.08 -3.08 4.78 30.59 0.15 -2.94 16 11 C 0.09 2.52 3.15 44.17 0.14 2.66 16 12 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 13 N -0.82 -24.66 8.44 -171.82 -1.45 -26.11 16 14 C 0.48 14.26 7.07 87.66 0.62 14.88 16 15 O -0.59 -21.89 15.85 -3.02 -0.05 -21.94 16 16 N -0.70 -15.31 5.35 -440.04 -2.36 -17.67 16 17 C 0.10 2.19 3.89 45.52 0.18 2.37 16 18 C -0.12 -1.42 7.46 31.12 0.23 -1.19 16 19 C -0.13 -1.41 4.34 -11.01 -0.05 -1.46 16 20 C 0.52 9.14 7.36 87.66 0.65 9.79 16 21 N -0.83 -7.06 8.87 -173.53 -1.54 -8.60 16 22 O -0.60 -17.56 16.59 -3.04 -0.05 -17.61 16 23 C -0.13 -2.04 7.20 31.12 0.22 -1.82 16 24 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 25 H 0.03 1.13 7.58 -2.38 -0.02 1.12 16 26 H 0.03 1.36 6.80 -2.39 -0.02 1.34 16 27 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.34 11.20 8.58 -89.69 -0.77 10.43 16 30 H 0.35 8.72 9.06 -89.70 -0.81 7.91 16 31 H 0.42 6.55 8.73 -92.70 -0.81 5.74 16 32 H 0.07 2.22 7.40 -2.39 -0.02 2.21 16 33 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.42 0.39 8.83 -92.71 -0.82 -0.43 16 37 H 0.41 3.21 8.93 -92.71 -0.83 2.38 16 38 H 0.06 1.40 7.43 -2.39 -0.02 1.38 16 39 H 0.13 1.29 8.12 -2.38 -0.02 1.28 16 Total: -1.00 -85.39 328.16 -3.27 -88.66 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -2.97 Total: 25.50 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 2.96 Total: -7.85 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -5.05 Total: -113.35 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.10 Total: -39.55 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -85.39 -3.27 -88.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716738866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.718 kcal (2) G-P(sol) polarization free energy of solvation -85.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds