Wall clock time and date at job start Mon Mar 30 2020 05:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 119.99703 * 2 1 4 4 H 1.48496 * 109.46975 * 269.99527 * 3 2 1 5 5 H 1.48498 * 109.47102 * 29.99799 * 3 2 1 6 6 H 1.48498 * 109.46824 * 149.99646 * 3 2 1 7 7 C 1.38945 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99853 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99957 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47041 * 180.02562 * 12 10 9 14 14 C 1.47014 * 111.00030 * 293.54818 * 13 12 10 15 15 C 1.53085 * 109.38467 * 177.26115 * 14 13 12 16 16 O 1.43117 * 109.21305 * 57.26979 * 15 14 13 17 17 C 1.42440 * 113.78862 * 302.28996 * 16 15 14 18 18 C 1.54189 * 109.97712 * 295.65730 * 17 16 15 19 19 C 1.55030 * 102.99001 * 262.72126 * 18 17 16 20 20 N 1.48581 * 103.27437 * 322.83938 * 19 18 17 21 21 C 1.48016 * 105.82625 * 38.95195 * 20 19 18 22 22 C 1.47111 * 110.99990 * 169.99933 * 13 12 10 23 23 H 0.97004 * 119.99660 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00037 * 0.02562 * 9 7 2 25 25 H 1.08994 * 109.47324 * 59.99838 * 12 10 9 26 26 H 1.09004 * 109.46663 * 300.00006 * 12 10 9 27 27 H 1.08995 * 109.48653 * 297.23985 * 14 13 12 28 28 H 1.09007 * 109.48228 * 57.29027 * 14 13 12 29 29 H 1.09002 * 109.51428 * 177.18421 * 15 14 13 30 30 H 1.08998 * 109.51662 * 297.34246 * 15 14 13 31 31 H 1.09002 * 110.74317 * 144.29522 * 18 17 16 32 32 H 1.08995 * 110.74004 * 21.14636 * 18 17 16 33 33 H 1.09001 * 110.65720 * 81.28238 * 19 18 17 34 34 H 1.08997 * 110.66148 * 204.22773 * 19 18 17 35 35 H 1.00904 * 110.99314 * 159.46942 * 20 19 18 36 36 H 1.09003 * 109.97292 * 94.12422 * 21 20 19 37 37 H 1.08996 * 109.97138 * 215.39366 * 21 20 19 38 38 H 1.09001 * 109.50497 * 61.49267 * 22 13 12 39 39 H 1.09004 * 109.52737 * 301.40205 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9794 0.0007 14 6 2.9586 -6.0235 -1.2569 15 6 3.9871 -7.1554 -1.1895 16 8 3.3119 -8.3906 -0.9313 17 6 2.5424 -8.3850 0.2673 18 6 3.4695 -8.2176 1.4879 19 6 3.6679 -9.6751 1.9773 20 7 2.3365 -10.2949 1.7520 21 6 1.8473 -9.7449 0.4678 22 6 1.5129 -7.2591 0.2387 23 1 -0.4850 0.8401 -0.0004 24 1 0.3534 -2.3906 -0.0002 25 1 0.6175 -4.9205 -0.8902 26 1 0.6169 -4.9208 0.8897 27 1 2.2763 -6.2012 -2.0881 28 1 3.4725 -5.0736 -1.4046 29 1 4.5177 -7.2222 -2.1393 30 1 4.6978 -6.9543 -0.3880 31 1 2.9890 -7.6139 2.2578 32 1 4.4214 -7.7768 1.1919 33 1 4.4318 -10.1790 1.3851 34 1 3.9293 -9.6934 3.0353 35 1 2.4082 -11.3006 1.7107 36 1 2.1067 -10.4187 -0.3488 37 1 0.7668 -9.6080 0.5090 38 1 0.7957 -7.4420 -0.5615 39 1 0.9898 -7.2200 1.1942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717440789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:25 Heat of formation + Delta-G solvation = -60.553869 kcal Electronic energy + Delta-G solvation = -21368.766682 eV Core-core repulsion = 18118.585368 eV Total energy + Delta-G solvation = -3250.181314 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41384 -38.33146 -36.78300 -35.19596 -33.82577 -31.27795 -31.10187 -29.60883 -28.87631 -26.44908 -24.83178 -23.81122 -22.04387 -21.51081 -19.17774 -19.13244 -17.86772 -17.21704 -16.34601 -16.00719 -15.32338 -15.07195 -14.84506 -14.71503 -14.25187 -14.11416 -13.61360 -13.53049 -13.41168 -13.11214 -12.36636 -12.28166 -12.06943 -11.67483 -11.56890 -11.44135 -11.26990 -11.13439 -10.96758 -10.88828 -10.40111 -10.29600 -10.22025 -9.54847 -9.47573 -8.75908 -8.43985 -7.99790 -7.89249 -6.42785 -3.83733 3.16879 3.25762 3.31513 3.63944 3.85032 3.90261 4.13600 4.21470 4.62601 4.75261 4.78262 5.01912 5.17397 5.19860 5.23581 5.32924 5.36995 5.43263 5.56702 5.62795 5.67743 5.75563 5.77938 5.81195 5.90546 6.03664 6.09672 6.23572 6.26912 6.30839 6.49038 7.08620 7.18847 7.22807 7.35305 7.54097 8.05017 8.60360 9.16793 9.53092 10.04586 10.74919 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041668 B = 0.003881 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.823204 B = 7213.704010 C = 7335.095170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.444 3.556 11 O -0.579 6.579 12 C 0.046 3.954 13 N -0.509 5.509 14 C 0.015 3.985 15 C 0.065 3.935 16 O -0.381 6.381 17 C 0.113 3.887 18 C -0.135 4.135 19 C 0.037 3.963 20 N -0.669 5.669 21 C 0.054 3.946 22 C 0.037 3.963 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.031 0.969 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.337 0.663 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.037 0.963 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 -17.306 0.156 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.230 3.770 11 O -0.463 6.463 12 C -0.086 4.086 13 N -0.234 5.234 14 C -0.112 4.112 15 C -0.011 4.011 16 O -0.300 6.300 17 C 0.072 3.928 18 C -0.173 4.173 19 C -0.092 4.092 20 N -0.299 5.299 21 C -0.075 4.075 22 C -0.092 4.092 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.153 0.847 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.583 -16.776 0.870 16.996 hybrid contribution -0.358 0.564 -1.225 1.395 sum 2.224 -16.212 -0.355 16.368 Atomic orbital electron populations 1.69616 1.05951 1.28172 1.50552 1.25262 0.95625 0.99723 0.97298 0.85859 0.79262 0.80818 0.78363 1.20438 1.20913 1.19390 1.19695 0.93355 0.82193 1.47631 0.87903 1.41869 1.09208 1.04583 1.64327 1.19700 0.88381 0.84490 0.84454 1.90472 1.13681 1.86888 1.55273 1.21873 0.93908 0.91129 1.01645 1.61830 1.25394 1.01232 1.34947 1.22928 0.96843 1.01866 0.89609 1.22725 0.94278 0.82676 1.01439 1.87859 1.64984 1.35573 1.41576 1.21963 0.91118 0.94202 0.85500 1.22941 1.00695 0.95932 0.97723 1.23085 0.90010 0.95028 1.01087 1.63163 1.24267 1.10774 1.31667 1.22601 0.99923 0.93911 0.91109 1.22689 0.95220 0.89475 1.01793 0.91860 0.77481 0.93392 0.89205 0.95103 0.86854 0.88663 0.91790 0.89463 0.90076 0.94027 0.90001 0.84740 0.92658 0.89320 0.94435 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 10 C 0.44 10.40 7.49 -10.99 -0.08 10.32 16 11 O -0.58 -15.29 13.93 5.55 0.08 -15.22 16 12 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 13 N -0.51 -8.62 4.24 -236.00 -1.00 -9.62 16 14 C 0.02 0.26 5.28 -3.72 -0.02 0.24 16 15 C 0.07 0.93 6.72 37.20 0.25 1.18 16 16 O -0.38 -5.42 10.23 -35.23 -0.36 -5.78 16 17 C 0.11 1.47 1.00 -89.67 -0.09 1.38 16 18 C -0.13 -1.73 5.86 -25.04 -0.15 -1.88 16 19 C 0.04 0.39 7.56 -1.82 -0.01 0.37 16 20 N -0.67 -6.84 7.52 -109.89 -0.83 -7.66 16 21 C 0.05 0.59 7.02 -2.67 -0.02 0.57 16 22 C 0.04 0.52 4.00 -3.92 -0.02 0.50 16 23 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 25 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 26 H 0.09 1.47 8.05 -51.93 -0.42 1.05 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.11 2.21 5.88 -51.92 -0.31 1.91 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.94 6.33 -51.93 -0.33 0.61 16 31 H 0.09 1.21 7.77 -51.93 -0.40 0.80 16 32 H 0.08 1.10 6.11 -51.93 -0.32 0.79 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.34 2.73 8.92 -39.29 -0.35 2.38 16 36 H 0.06 0.58 7.97 -51.93 -0.41 0.17 16 37 H 0.09 0.90 7.69 -51.93 -0.40 0.50 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 1.16 8.01 -51.93 -0.42 0.75 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -30.54 309.60 -7.93 -38.47 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.72 Total: 11.68 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.40 Total: 5.55 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -1.16 Total: -55.30 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.28 Total: -21.00 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.54 -7.93 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717440789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.086 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds