Wall clock time and date at job start Mon Mar 30 2020 05:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 119.99703 * 2 1 4 4 H 1.48496 * 109.46975 * 269.99527 * 3 2 1 5 5 H 1.48498 * 109.47102 * 29.99799 * 3 2 1 6 6 H 1.48498 * 109.46824 * 149.99646 * 3 2 1 7 7 C 1.38945 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99853 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99957 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47041 * 180.02562 * 12 10 9 14 14 C 1.47014 * 111.00030 * 293.54818 * 13 12 10 15 15 C 1.53085 * 109.38467 * 177.26115 * 14 13 12 16 16 O 1.43117 * 109.21305 * 57.26979 * 15 14 13 17 17 C 1.42440 * 113.78862 * 302.28996 * 16 15 14 18 18 C 1.54189 * 109.97712 * 295.65730 * 17 16 15 19 19 C 1.55030 * 102.99001 * 262.72126 * 18 17 16 20 20 N 1.48581 * 103.27437 * 322.83938 * 19 18 17 21 21 C 1.48016 * 105.82625 * 38.95195 * 20 19 18 22 22 C 1.47111 * 110.99990 * 169.99933 * 13 12 10 23 23 H 0.97004 * 119.99660 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00037 * 0.02562 * 9 7 2 25 25 H 1.08994 * 109.47324 * 59.99838 * 12 10 9 26 26 H 1.09004 * 109.46663 * 300.00006 * 12 10 9 27 27 H 1.08995 * 109.48653 * 297.23985 * 14 13 12 28 28 H 1.09007 * 109.48228 * 57.29027 * 14 13 12 29 29 H 1.09002 * 109.51428 * 177.18421 * 15 14 13 30 30 H 1.08998 * 109.51662 * 297.34246 * 15 14 13 31 31 H 1.09002 * 110.74317 * 144.29522 * 18 17 16 32 32 H 1.08995 * 110.74004 * 21.14636 * 18 17 16 33 33 H 1.09001 * 110.65720 * 81.28238 * 19 18 17 34 34 H 1.08997 * 110.66148 * 204.22773 * 19 18 17 35 35 H 1.00904 * 110.99314 * 159.46942 * 20 19 18 36 36 H 1.09003 * 109.97292 * 94.12422 * 21 20 19 37 37 H 1.08996 * 109.97138 * 215.39366 * 21 20 19 38 38 H 1.09001 * 109.50497 * 61.49267 * 22 13 12 39 39 H 1.09004 * 109.52737 * 301.40205 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9794 0.0007 14 6 2.9586 -6.0235 -1.2569 15 6 3.9871 -7.1554 -1.1895 16 8 3.3119 -8.3906 -0.9313 17 6 2.5424 -8.3850 0.2673 18 6 3.4695 -8.2176 1.4879 19 6 3.6679 -9.6751 1.9773 20 7 2.3365 -10.2949 1.7520 21 6 1.8473 -9.7449 0.4678 22 6 1.5129 -7.2591 0.2387 23 1 -0.4850 0.8401 -0.0004 24 1 0.3534 -2.3906 -0.0002 25 1 0.6175 -4.9205 -0.8902 26 1 0.6169 -4.9208 0.8897 27 1 2.2763 -6.2012 -2.0881 28 1 3.4725 -5.0736 -1.4046 29 1 4.5177 -7.2222 -2.1393 30 1 4.6978 -6.9543 -0.3880 31 1 2.9890 -7.6139 2.2578 32 1 4.4214 -7.7768 1.1919 33 1 4.4318 -10.1790 1.3851 34 1 3.9293 -9.6934 3.0353 35 1 2.4082 -11.3006 1.7107 36 1 2.1067 -10.4187 -0.3488 37 1 0.7668 -9.6080 0.5090 38 1 0.7957 -7.4420 -0.5615 39 1 0.9898 -7.2200 1.1942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717440789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:24 Heat of formation + Delta-G solvation = -85.990813 kcal Electronic energy + Delta-G solvation = -21369.869711 eV Core-core repulsion = 18118.585368 eV Total energy + Delta-G solvation = -3251.284343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54117 -40.07959 -37.89197 -36.54129 -35.77176 -33.29004 -32.17632 -30.67509 -30.12946 -27.83592 -26.42006 -25.20430 -23.19984 -22.49254 -20.99172 -20.23623 -19.87137 -18.22140 -17.85637 -17.28774 -16.65082 -16.55264 -16.27675 -15.91816 -15.76407 -15.59548 -15.21459 -14.79121 -14.57868 -14.24949 -13.96355 -13.50751 -13.31242 -13.15258 -12.98574 -12.88374 -12.57717 -12.42353 -12.30195 -12.20604 -12.12145 -11.98637 -11.51283 -11.35934 -10.73755 -10.20834 -10.00478 -9.54466 -9.29880 -8.46869 -5.95599 1.37580 1.41582 1.54268 2.03843 2.26842 2.57244 2.66012 3.19715 3.28784 3.34515 3.62736 3.79312 3.82276 3.98363 4.09577 4.23798 4.31741 4.36802 4.42627 4.45825 4.49322 4.56167 4.62863 4.64082 4.85793 4.86666 4.90917 5.00525 5.09089 5.20025 5.40667 5.61854 5.79202 5.98209 6.06994 6.22928 6.41055 6.59826 7.12401 7.55531 8.10913 8.70583 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041668 B = 0.003881 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.823204 B = 7213.704010 C = 7335.095170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.443 3.557 11 O -0.613 6.613 12 C 0.057 3.943 13 N -0.525 5.525 14 C 0.018 3.982 15 C 0.072 3.928 16 O -0.383 6.383 17 C 0.107 3.893 18 C -0.137 4.137 19 C 0.043 3.957 20 N -0.671 5.671 21 C 0.060 3.940 22 C 0.039 3.961 23 H 0.277 0.723 24 H 0.396 0.604 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.352 0.648 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.047 0.953 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 -18.506 0.231 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.230 3.770 11 O -0.499 6.499 12 C -0.074 4.074 13 N -0.250 5.250 14 C -0.110 4.110 15 C -0.004 4.004 16 O -0.302 6.302 17 C 0.066 3.934 18 C -0.175 4.175 19 C -0.086 4.086 20 N -0.302 5.302 21 C -0.070 4.070 22 C -0.089 4.089 23 H 0.087 0.913 24 H 0.229 0.771 25 H 0.084 0.916 26 H 0.129 0.871 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.169 0.831 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.968 -18.010 0.946 18.142 hybrid contribution -0.162 0.881 -1.237 1.527 sum 1.805 -17.129 -0.291 17.226 Atomic orbital electron populations 1.69678 1.06856 1.29282 1.50395 1.26030 0.96517 1.02389 0.96285 0.84933 0.77905 0.76912 0.78630 1.19642 1.19588 1.19752 1.19660 0.92703 0.83936 1.49868 0.90232 1.41930 1.09301 1.04688 1.65171 1.20659 0.88285 0.85769 0.82274 1.90453 1.15545 1.87706 1.56173 1.21747 0.93596 0.88600 1.03440 1.61788 1.25785 1.02229 1.35222 1.22820 0.97274 1.01065 0.89827 1.22674 0.93450 0.82044 1.02277 1.87863 1.65066 1.35109 1.42143 1.22147 0.90941 0.95184 0.85082 1.22896 0.99880 0.97311 0.97450 1.23032 0.90427 0.93403 1.01699 1.63159 1.23916 1.11898 1.31261 1.22582 1.00249 0.92560 0.91592 1.22768 0.95549 0.88033 1.02537 0.91314 0.77070 0.91599 0.87110 0.94533 0.90323 0.86583 0.92662 0.90779 0.91425 0.93460 0.89054 0.83129 0.92051 0.88249 0.93438 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 2 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 3 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.48 5.29 -306.99 -1.62 -31.11 16 10 C 0.44 21.09 7.49 87.66 0.66 21.74 16 11 O -0.61 -33.45 13.93 -3.07 -0.04 -33.50 16 12 C 0.06 2.02 5.45 85.56 0.47 2.48 16 13 N -0.53 -17.40 4.24 -900.57 -3.81 -21.22 16 14 C 0.02 0.60 5.28 86.31 0.46 1.06 16 15 C 0.07 2.00 6.72 72.01 0.48 2.48 16 16 O -0.38 -10.25 10.23 -148.98 -1.52 -11.77 16 17 C 0.11 2.59 1.00 -10.18 -0.01 2.58 16 18 C -0.14 -3.38 5.86 31.69 0.19 -3.19 16 19 C 0.04 0.83 7.56 86.67 0.66 1.48 16 20 N -0.67 -11.92 7.52 -501.57 -3.77 -15.69 16 21 C 0.06 1.14 7.02 86.44 0.61 1.75 16 22 C 0.04 1.02 4.00 86.13 0.34 1.36 16 23 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 24 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 25 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 26 H 0.11 3.45 8.05 -2.39 -0.02 3.43 16 27 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 3.17 5.88 -2.38 -0.01 3.16 16 29 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.06 1.63 6.33 -2.39 -0.02 1.62 16 31 H 0.07 2.00 7.77 -2.39 -0.02 1.98 16 32 H 0.07 1.83 6.11 -2.39 -0.01 1.82 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.35 4.64 8.92 -89.69 -0.80 3.84 16 36 H 0.06 1.11 7.97 -2.39 -0.02 1.09 16 37 H 0.10 1.70 7.69 -2.39 -0.02 1.68 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 2.35 8.01 -2.38 -0.02 2.33 16 Total: -1.00 -65.67 309.60 -3.80 -69.47 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.46 Total: 34.85 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 5.12 Total: 13.51 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -8.93 Total: -117.52 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -1.57 Total: -45.27 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -65.67 -3.80 -69.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717440789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.519 kcal (2) G-P(sol) polarization free energy of solvation -65.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds