Wall clock time and date at job start Mon Mar 30 2020 05:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00090 * 2 1 4 4 H 1.48506 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46921 * 299.99334 * 3 2 1 6 6 H 1.48498 * 109.47527 * 59.99494 * 3 2 1 7 7 C 1.37877 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99623 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00235 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00490 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99690 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00188 * 180.02562 * 11 10 9 14 14 N 1.46895 * 109.47106 * 180.02562 * 13 11 10 15 15 C 1.46900 * 110.99924 * 180.02562 * 14 13 11 16 16 C 1.53786 * 113.61608 * 105.85932 * 15 14 13 17 17 C 1.54049 * 86.98426 * 140.01769 * 16 15 14 18 18 C 1.53002 * 113.62024 * 220.02020 * 17 16 15 19 19 C 1.50697 * 109.47431 * 272.50042 * 18 17 16 20 20 N 1.34773 * 120.00355 * 179.97438 * 19 18 17 21 21 O 1.21283 * 119.99626 * 359.97438 * 19 18 17 22 22 C 1.53781 * 113.61428 * 203.46824 * 15 14 13 23 23 H 0.97000 * 119.99819 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47072 * 60.00063 * 9 7 2 25 25 H 1.09001 * 109.47420 * 299.99896 * 9 7 2 26 26 H 0.97006 * 119.99616 * 0.02562 * 10 9 7 27 27 H 1.08994 * 109.47122 * 60.00287 * 13 11 10 28 28 H 1.09001 * 109.46900 * 300.00559 * 13 11 10 29 29 H 1.00902 * 110.99778 * 303.95198 * 14 13 11 30 30 H 1.09002 * 112.84869 * 334.66356 * 15 14 13 31 31 H 1.08992 * 113.61675 * 254.61513 * 16 15 14 32 32 H 1.09000 * 113.60973 * 25.51800 * 16 15 14 33 33 H 1.08996 * 113.68970 * 89.12734 * 17 16 15 34 34 H 1.08997 * 109.47064 * 32.50151 * 18 17 16 35 35 H 1.09006 * 109.47182 * 152.49563 * 18 17 16 36 36 H 0.97002 * 119.99536 * 359.97438 * 20 19 18 37 37 H 0.96998 * 120.00428 * 179.97438 * 20 19 18 38 38 H 1.08999 * 113.61567 * 334.48132 * 22 15 14 39 39 H 1.08998 * 113.61196 * 105.38486 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5612 -5.1050 0.0011 13 6 2.7329 -6.0289 0.0016 14 7 1.9984 -7.3010 0.0015 15 6 2.9228 -8.4426 0.0027 16 6 3.0102 -9.1632 1.3585 17 6 3.0472 -10.4821 0.5632 18 6 2.2246 -11.6046 1.1990 19 6 3.0763 -12.3497 2.1942 20 7 2.5582 -13.3868 2.8816 21 8 4.2279 -12.0160 2.3767 22 6 2.3065 -9.7350 -0.5585 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 3.1566 -3.4355 0.0009 27 1 3.3594 -5.9708 0.8916 28 1 3.3597 -5.9714 -0.8883 29 1 1.3616 -7.3509 0.7827 30 1 3.8951 -8.2004 -0.4265 31 1 3.9300 -8.9553 1.9050 32 1 2.1167 -9.0485 1.9722 33 1 4.0528 -10.7987 0.2867 34 1 1.3602 -11.1782 1.7078 35 1 1.8870 -12.2919 0.4232 36 1 1.6370 -13.6534 2.7359 37 1 3.1065 -13.8666 3.5219 38 1 1.2211 -9.7762 -0.4678 39 1 2.6587 -9.9882 -1.5584 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718556788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:42 Heat of formation + Delta-G solvation = -69.314149 kcal Electronic energy + Delta-G solvation = -19594.649696 eV Core-core repulsion = 16344.088508 eV Total energy + Delta-G solvation = -3250.561189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26368 -39.06903 -38.36029 -34.37346 -34.02286 -33.83788 -32.29055 -30.16226 -27.80261 -25.75974 -25.66146 -22.87053 -22.14428 -20.60739 -19.96559 -19.43153 -17.75108 -17.10554 -16.92316 -15.95588 -15.84311 -15.65558 -15.14599 -15.02322 -14.45080 -14.38265 -13.98646 -13.63383 -12.93897 -12.89407 -12.64047 -12.52636 -12.12269 -11.94221 -11.78413 -11.41491 -11.02055 -10.92059 -10.88935 -10.74815 -10.43543 -10.30590 -10.17569 -10.06224 -9.36345 -8.99474 -8.72360 -8.25299 -7.83772 -6.15481 -4.22168 2.33019 3.17868 3.24316 3.31321 3.34497 3.42661 3.87091 4.29979 4.32117 4.40508 4.49844 4.64458 4.78230 4.87875 5.08255 5.20588 5.20831 5.27466 5.44896 5.53422 5.58903 5.63121 5.69640 5.74425 5.92904 6.05994 6.25770 6.39275 6.94643 7.03667 7.34336 7.44882 7.48490 7.54402 7.69736 7.92333 7.98913 8.66534 8.80862 9.15020 9.44653 10.94803 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051725 B = 0.002469 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.197471 B =11337.291322 C =11453.292424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.715 5.715 11 C 0.496 3.504 12 O -0.545 6.545 13 C 0.039 3.961 14 N -0.661 5.661 15 C 0.067 3.933 16 C -0.163 4.163 17 C -0.095 4.095 18 C -0.132 4.132 19 C 0.515 3.485 20 N -0.861 5.861 21 O -0.541 6.541 22 C -0.123 4.123 23 H 0.265 0.735 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.390 0.610 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.352 0.648 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.401 0.599 37 H 0.399 0.601 38 H 0.088 0.912 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 -25.023 2.942 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.364 5.364 11 C 0.280 3.720 12 O -0.424 6.424 13 C -0.094 4.094 14 N -0.292 5.292 15 C -0.043 4.043 16 C -0.202 4.202 17 C -0.115 4.115 18 C -0.172 4.172 19 C 0.301 3.699 20 N -0.425 5.425 21 O -0.418 6.418 22 C -0.161 4.161 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.222 0.778 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.172 0.828 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.229 0.771 37 H 0.229 0.771 38 H 0.106 0.894 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.339 -24.632 2.232 25.303 hybrid contribution 0.920 0.670 1.190 1.647 sum 6.259 -23.962 3.422 25.001 Atomic orbital electron populations 1.69988 1.06102 1.27160 1.49048 1.24965 0.94928 0.99481 0.94750 0.86358 0.79827 0.82964 0.77734 1.19642 1.20792 1.20820 1.21275 0.93304 0.90479 1.52990 0.91854 1.19089 0.88321 0.81967 0.97689 1.46454 1.11079 1.06156 1.72732 1.20399 0.89567 0.84267 0.77762 1.90657 1.16723 1.84750 1.50224 1.21883 0.95724 0.89555 1.02198 1.60088 1.18238 0.99779 1.51069 1.23007 0.95919 0.89808 0.95614 1.23820 1.02419 0.96466 0.97517 1.22238 0.99780 0.92528 0.96934 1.21693 0.99050 0.98513 0.97928 1.20852 0.87991 0.79768 0.81320 1.43963 1.17512 1.35421 1.45607 1.90749 1.18424 1.66348 1.66232 1.23145 1.00763 0.94436 0.97747 0.92519 0.95538 0.95634 0.77780 0.92792 0.88626 0.82792 0.88485 0.91294 0.90043 0.88264 0.88576 0.88589 0.77087 0.77073 0.89377 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.23 16 9 C 0.25 6.72 5.43 -5.20 -0.03 6.69 16 10 N -0.72 -15.20 5.55 -61.47 -0.34 -15.54 16 11 C 0.50 9.98 7.87 -10.99 -0.09 9.89 16 12 O -0.55 -13.27 16.20 5.55 0.09 -13.18 16 13 C 0.04 0.56 6.02 -4.98 -0.03 0.53 16 14 N -0.66 -9.08 6.24 -107.13 -0.67 -9.74 16 15 C 0.07 0.71 4.16 -66.90 -0.28 0.43 16 16 C -0.16 -1.60 7.27 -25.77 -0.19 -1.78 16 17 C -0.10 -0.81 3.16 -89.67 -0.28 -1.10 16 18 C -0.13 -0.84 5.54 -27.88 -0.15 -1.00 16 19 C 0.52 4.28 8.10 -10.99 -0.09 4.19 16 20 N -0.86 -3.93 8.87 31.22 0.28 -3.66 16 21 O -0.54 -6.99 16.59 5.56 0.09 -6.90 16 22 C -0.12 -1.10 7.44 -25.92 -0.19 -1.29 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.39 7.07 8.32 -40.82 -0.34 6.73 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 1.23 8.13 -51.93 -0.42 0.80 16 29 H 0.35 5.00 7.91 -39.29 -0.31 4.69 16 30 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.78 7.59 -51.93 -0.39 0.39 16 33 H 0.10 0.96 7.67 -51.93 -0.40 0.56 16 34 H 0.10 0.51 7.85 -51.93 -0.41 0.11 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.40 0.62 8.83 -40.82 -0.36 0.26 16 37 H 0.40 1.61 8.93 -40.82 -0.36 1.25 16 38 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -35.59 333.28 -7.46 -43.04 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.90 Total: 7.50 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.75 Total: 3.04 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.00 Total: -54.50 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.18 Total: -20.08 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.59 -7.46 -43.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718556788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.272 kcal (2) G-P(sol) polarization free energy of solvation -35.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds