Wall clock time and date at job start Mon Mar 30 2020 05:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00090 * 2 1 4 4 H 1.48506 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46921 * 299.99334 * 3 2 1 6 6 H 1.48498 * 109.47527 * 59.99494 * 3 2 1 7 7 C 1.37877 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99623 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00235 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00490 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99690 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00188 * 180.02562 * 11 10 9 14 14 N 1.46895 * 109.47106 * 180.02562 * 13 11 10 15 15 C 1.46900 * 110.99924 * 180.02562 * 14 13 11 16 16 C 1.53786 * 113.61608 * 105.85932 * 15 14 13 17 17 C 1.54049 * 86.98426 * 140.01769 * 16 15 14 18 18 C 1.53002 * 113.62024 * 220.02020 * 17 16 15 19 19 C 1.50697 * 109.47431 * 272.50042 * 18 17 16 20 20 N 1.34773 * 120.00355 * 179.97438 * 19 18 17 21 21 O 1.21283 * 119.99626 * 359.97438 * 19 18 17 22 22 C 1.53781 * 113.61428 * 203.46824 * 15 14 13 23 23 H 0.97000 * 119.99819 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47072 * 60.00063 * 9 7 2 25 25 H 1.09001 * 109.47420 * 299.99896 * 9 7 2 26 26 H 0.97006 * 119.99616 * 0.02562 * 10 9 7 27 27 H 1.08994 * 109.47122 * 60.00287 * 13 11 10 28 28 H 1.09001 * 109.46900 * 300.00559 * 13 11 10 29 29 H 1.00902 * 110.99778 * 303.95198 * 14 13 11 30 30 H 1.09002 * 112.84869 * 334.66356 * 15 14 13 31 31 H 1.08992 * 113.61675 * 254.61513 * 16 15 14 32 32 H 1.09000 * 113.60973 * 25.51800 * 16 15 14 33 33 H 1.08996 * 113.68970 * 89.12734 * 17 16 15 34 34 H 1.08997 * 109.47064 * 32.50151 * 18 17 16 35 35 H 1.09006 * 109.47182 * 152.49563 * 18 17 16 36 36 H 0.97002 * 119.99536 * 359.97438 * 20 19 18 37 37 H 0.96998 * 120.00428 * 179.97438 * 20 19 18 38 38 H 1.08999 * 113.61567 * 334.48132 * 22 15 14 39 39 H 1.08998 * 113.61196 * 105.38486 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5612 -5.1050 0.0011 13 6 2.7329 -6.0289 0.0016 14 7 1.9984 -7.3010 0.0015 15 6 2.9228 -8.4426 0.0027 16 6 3.0102 -9.1632 1.3585 17 6 3.0472 -10.4821 0.5632 18 6 2.2246 -11.6046 1.1990 19 6 3.0763 -12.3497 2.1942 20 7 2.5582 -13.3868 2.8816 21 8 4.2279 -12.0160 2.3767 22 6 2.3065 -9.7350 -0.5585 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 3.1566 -3.4355 0.0009 27 1 3.3594 -5.9708 0.8916 28 1 3.3597 -5.9714 -0.8883 29 1 1.3616 -7.3509 0.7827 30 1 3.8951 -8.2004 -0.4265 31 1 3.9300 -8.9553 1.9050 32 1 2.1167 -9.0485 1.9722 33 1 4.0528 -10.7987 0.2867 34 1 1.3602 -11.1782 1.7078 35 1 1.8870 -12.2919 0.4232 36 1 1.6370 -13.6534 2.7359 37 1 3.1065 -13.8666 3.5219 38 1 1.2211 -9.7762 -0.4678 39 1 2.6587 -9.9882 -1.5584 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718556788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:41 Heat of formation + Delta-G solvation = -100.246249 kcal Electronic energy + Delta-G solvation = -19595.991013 eV Core-core repulsion = 16344.088508 eV Total energy + Delta-G solvation = -3251.902505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.01333 -40.42854 -39.40064 -36.17314 -35.10005 -34.57725 -34.32015 -30.94286 -29.59511 -27.12075 -26.49797 -24.46061 -23.32363 -21.48457 -21.22303 -20.44855 -18.91253 -18.24871 -17.53094 -17.50024 -17.20228 -16.74819 -16.58186 -16.18736 -15.83120 -15.58963 -15.01350 -14.78946 -14.46304 -14.13395 -13.93842 -13.59030 -13.47966 -13.27089 -12.91425 -12.87451 -12.73664 -12.43987 -12.22200 -11.75074 -11.50024 -11.45470 -11.19888 -10.87166 -10.81508 -10.66399 -10.59174 -9.81585 -9.26200 -8.29293 -6.45751 1.43222 1.44357 1.57884 1.72584 1.80133 2.30145 2.51307 2.71228 3.05521 3.34029 3.66454 3.71612 3.94294 4.00421 4.05877 4.18548 4.41015 4.43675 4.50215 4.67471 4.76962 4.86293 4.90133 5.00841 5.11747 5.20714 5.24854 5.31843 5.49396 5.51778 5.70404 5.85461 5.95207 6.11029 6.37856 6.53409 6.65899 6.95169 7.23768 7.42418 7.52671 8.83173 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051725 B = 0.002469 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.197471 B =11337.291322 C =11453.292424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.267 3.733 10 N -0.710 5.710 11 C 0.492 3.508 12 O -0.592 6.592 13 C 0.055 3.945 14 N -0.675 5.675 15 C 0.063 3.937 16 C -0.161 4.161 17 C -0.088 4.088 18 C -0.128 4.128 19 C 0.510 3.490 20 N -0.843 5.843 21 O -0.595 6.595 22 C -0.114 4.114 23 H 0.269 0.731 24 H -0.014 1.014 25 H -0.013 1.013 26 H 0.408 0.592 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.346 0.654 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.418 0.582 37 H 0.403 0.597 38 H 0.088 0.912 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.289 -25.776 2.836 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.144 3.856 10 N -0.361 5.361 11 C 0.279 3.721 12 O -0.473 6.473 13 C -0.077 4.077 14 N -0.306 5.306 15 C -0.047 4.047 16 C -0.201 4.201 17 C -0.108 4.108 18 C -0.167 4.167 19 C 0.297 3.703 20 N -0.407 5.407 21 O -0.476 6.476 22 C -0.153 4.153 23 H 0.077 0.923 24 H 0.004 0.996 25 H 0.005 0.995 26 H 0.244 0.756 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.166 0.834 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.249 0.751 37 H 0.234 0.766 38 H 0.107 0.893 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.884 -25.455 2.131 26.456 hybrid contribution 0.377 0.796 1.241 1.522 sum 7.261 -24.659 3.372 25.926 Atomic orbital electron populations 1.70146 1.08267 1.28492 1.50063 1.26089 0.95814 1.03972 0.93911 0.85096 0.79063 0.77273 0.77677 1.17656 1.20440 1.20447 1.21660 0.94323 0.90603 1.52704 0.89808 1.18522 0.88724 0.84399 0.93993 1.46203 1.11182 1.05599 1.73100 1.21468 0.89988 0.84934 0.75666 1.90632 1.19308 1.85413 1.51947 1.21810 0.94115 0.87312 1.04491 1.60145 1.19105 1.00242 1.51137 1.23165 0.95864 0.89154 0.96509 1.23789 1.01866 0.97310 0.97106 1.22112 0.99537 0.92711 0.96398 1.21705 0.98605 0.98193 0.98225 1.21196 0.87420 0.80185 0.81531 1.43831 1.18381 1.34037 1.44437 1.90730 1.20695 1.68109 1.68087 1.23087 1.00735 0.93247 0.98203 0.92252 0.99603 0.99518 0.75619 0.90178 0.86219 0.83405 0.87709 0.92498 0.89891 0.89435 0.87104 0.86003 0.75090 0.76611 0.89296 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.99 42.63 29.54 68.60 2.03 44.66 16 4 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.56 -30.49 9.28 25.60 0.24 -30.25 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.27 14.85 5.43 85.63 0.46 15.31 16 10 N -0.71 -30.29 5.55 -466.78 -2.59 -32.88 16 11 C 0.49 19.83 7.87 87.66 0.69 20.52 16 12 O -0.59 -29.66 16.20 -3.05 -0.05 -29.71 16 13 C 0.05 1.48 6.02 85.56 0.52 1.99 16 14 N -0.68 -17.69 6.24 -492.86 -3.07 -20.76 16 15 C 0.06 1.22 4.16 45.44 0.19 1.41 16 16 C -0.16 -2.98 7.27 31.21 0.23 -2.75 16 17 C -0.09 -1.37 3.16 -10.18 -0.03 -1.40 16 18 C -0.13 -1.35 5.54 29.85 0.17 -1.18 16 19 C 0.51 7.76 8.10 87.66 0.71 8.47 16 20 N -0.84 -6.08 8.87 -173.54 -1.54 -7.62 16 21 O -0.60 -15.23 16.59 -3.04 -0.05 -15.28 16 22 C -0.11 -1.83 7.44 31.12 0.23 -1.60 16 23 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 26 H 0.41 14.26 8.32 -92.70 -0.77 13.49 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.12 2.72 8.13 -2.39 -0.02 2.70 16 29 H 0.35 9.65 7.91 -89.69 -0.71 8.94 16 30 H 0.10 1.88 7.88 -2.39 -0.02 1.86 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.50 7.59 -2.39 -0.02 1.48 16 33 H 0.09 1.61 7.67 -2.39 -0.02 1.59 16 34 H 0.11 0.88 7.85 -2.39 -0.02 0.87 16 35 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.42 0.20 8.83 -92.71 -0.82 -0.62 16 37 H 0.40 2.64 8.93 -92.71 -0.83 1.81 16 38 H 0.09 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -80.29 333.28 -3.16 -83.45 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -2.03 Total: 23.42 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 3.86 Total: 11.08 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -6.92 Total: -117.62 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -0.10 Total: -44.99 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -80.29 -3.16 -83.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718556788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.797 kcal (2) G-P(sol) polarization free energy of solvation -80.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds