Wall clock time and date at job start Mon Mar 30 2020 05:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00087 * 2 1 4 4 H 1.48492 * 109.47064 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46991 * 119.99914 * 3 2 1 6 6 H 1.48495 * 109.47164 * 239.99822 * 3 2 1 7 7 C 1.38955 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00283 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99748 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00100 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99908 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47417 * 186.03414 * 12 10 9 14 14 C 1.48605 * 111.00423 * 176.46942 * 13 12 10 15 15 C 1.54496 * 104.60789 * 201.18683 * 14 13 12 16 16 C 1.53817 * 104.90604 * 23.76833 * 15 14 13 17 17 C 1.48660 * 111.00342 * 60.97074 * 13 12 10 18 18 C 1.52564 * 110.17137 * 118.65836 * 16 15 14 19 19 N 1.47119 * 109.29037 * 177.59902 * 18 16 15 20 20 C 1.47014 * 110.69465 * 302.29467 * 19 18 16 21 21 C 1.53104 * 109.36444 * 59.03554 * 20 19 18 22 22 O 1.42428 * 110.24714 * 241.02215 * 16 15 14 23 23 H 0.97001 * 120.00135 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00176 * 359.97438 * 9 7 2 25 25 H 1.09008 * 109.47401 * 306.03155 * 12 10 9 26 26 H 1.08999 * 109.47632 * 66.02962 * 12 10 9 27 27 H 1.08999 * 110.40711 * 319.96615 * 14 13 12 28 28 H 1.08998 * 110.40991 * 82.28515 * 14 13 12 29 29 H 1.08996 * 110.35025 * 142.62839 * 15 14 13 30 30 H 1.08998 * 110.34724 * 264.91266 * 15 14 13 31 31 H 1.08999 * 110.43078 * 277.45709 * 17 13 12 32 32 H 1.09008 * 110.42649 * 39.94197 * 17 13 12 33 33 H 1.08993 * 109.50466 * 297.54315 * 18 16 15 34 34 H 1.08997 * 109.50225 * 57.65575 * 18 16 15 35 35 H 1.00894 * 110.99838 * 66.03236 * 19 18 16 36 36 H 1.08997 * 109.49046 * 299.07343 * 20 19 18 37 37 H 1.08992 * 109.48701 * 179.00293 * 20 19 18 38 38 H 1.08994 * 109.51782 * 182.78345 * 21 20 19 39 39 H 1.09004 * 109.51426 * 62.61713 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2832 2.7464 0.0006 5 1 3.1018 1.6963 1.2126 6 1 3.1019 1.6964 -1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8630 -0.0022 13 7 2.1915 -5.9757 0.1435 14 6 1.4771 -7.2758 0.2322 15 6 2.4865 -8.2297 0.9091 16 6 3.4380 -7.3085 1.6915 17 6 2.9352 -5.8776 1.4270 18 6 3.3650 -7.6215 3.1829 19 7 4.3231 -6.7705 3.9055 20 6 5.6868 -6.9746 3.3955 21 6 5.7253 -6.6412 1.9017 22 8 4.7712 -7.4560 1.2128 23 1 -0.4850 0.8400 -0.0004 24 1 0.3533 -2.3907 -0.0016 25 1 0.5382 -4.8756 0.8287 26 1 0.7008 -4.9687 -0.9414 27 1 0.5802 -7.1756 0.8433 28 1 1.2194 -7.6365 -0.7636 29 1 1.9703 -8.9072 1.5891 30 1 3.0381 -8.7936 0.1569 31 1 3.7760 -5.1911 1.3280 32 1 2.2706 -5.5536 2.2280 33 1 2.3568 -7.4246 3.5472 34 1 3.6136 -8.6699 3.3473 35 1 4.0577 -5.7987 3.8492 36 1 5.9786 -8.0143 3.5436 37 1 6.3768 -6.3229 3.9314 38 1 6.7231 -6.8389 1.5101 39 1 5.4781 -5.5895 1.7568 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719959168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:34 Heat of formation + Delta-G solvation = -62.202265 kcal Electronic energy + Delta-G solvation = -21622.566197 eV Core-core repulsion = 18372.313403 eV Total energy + Delta-G solvation = -3250.252794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54181 -38.39825 -36.79419 -34.48834 -33.95568 -32.31183 -31.22790 -29.56493 -27.80003 -26.45754 -24.79836 -24.08544 -22.57932 -20.93982 -19.66295 -19.13064 -17.87871 -16.86181 -16.32419 -15.96854 -15.69803 -15.21482 -14.98814 -14.58550 -14.25382 -13.96392 -13.73869 -13.53709 -13.23560 -12.65426 -12.36624 -12.15563 -11.99446 -11.69903 -11.50053 -11.37584 -11.29796 -11.14121 -11.11478 -11.01574 -10.85435 -10.46019 -10.23758 -9.81960 -9.49711 -8.47430 -8.28267 -8.05413 -7.95245 -6.43906 -3.84892 3.18147 3.24192 3.28358 3.75076 3.87706 3.99955 4.09830 4.24114 4.59495 4.68922 4.80174 4.99621 5.04956 5.16588 5.19604 5.22498 5.25351 5.34866 5.54837 5.62772 5.63249 5.74427 5.77286 5.80686 5.87040 5.91735 5.96192 6.07999 6.24612 6.41294 6.73712 7.02338 7.15355 7.20501 7.36610 7.52563 8.03355 8.59272 9.15505 9.51599 10.03445 10.73749 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025342 B = 0.004811 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.599565 B = 5818.420433 C = 6445.307569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.442 3.558 11 O -0.579 6.579 12 C 0.033 3.967 13 N -0.479 5.479 14 C 0.029 3.971 15 C -0.106 4.106 16 C 0.075 3.925 17 C 0.014 3.986 18 C 0.038 3.962 19 N -0.684 5.684 20 C 0.021 3.979 21 C 0.016 3.984 22 O -0.358 6.358 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.345 0.655 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -14.561 5.399 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.209 1.209 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.227 3.773 11 O -0.463 6.463 12 C -0.099 4.099 13 N -0.202 5.202 14 C -0.099 4.099 15 C -0.145 4.145 16 C 0.033 3.967 17 C -0.114 4.114 18 C -0.092 4.092 19 N -0.313 5.313 20 C -0.109 4.109 21 C -0.062 4.062 22 O -0.277 6.277 23 H 0.082 0.918 24 H 0.225 0.775 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.163 0.837 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.980 -14.912 5.327 16.327 hybrid contribution -0.987 1.606 -0.067 1.886 sum 2.993 -13.306 5.260 14.618 Atomic orbital electron populations 1.69601 1.05948 1.28300 1.50429 1.25258 0.95624 0.99710 0.97251 0.85919 0.78777 0.80463 0.79074 1.20937 1.19929 1.19868 1.19642 0.93305 0.82213 1.47807 0.88011 1.41859 1.09176 1.04563 1.64328 1.19702 0.88395 0.84543 0.84634 1.90488 1.13663 1.86930 1.55265 1.22107 0.94176 0.91646 1.01940 1.65191 1.22016 1.00182 1.32842 1.23223 0.95309 0.90612 1.00781 1.22222 0.95601 0.97132 0.99513 1.22571 0.84125 0.95576 0.94440 1.23750 1.00342 0.96741 0.90583 1.22614 0.97235 0.98732 0.90621 1.60938 1.02108 1.12126 1.56140 1.22659 0.91173 1.02982 0.94060 1.23337 0.93636 0.96074 0.93135 1.88017 1.15578 1.64861 1.59239 0.91789 0.77487 0.93462 0.88988 0.93874 0.89798 0.90377 0.89630 0.87298 0.94003 0.89790 0.90021 0.83671 0.90234 0.89679 0.88498 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 10 C 0.44 10.52 7.43 -10.99 -0.08 10.43 16 11 O -0.58 -15.64 14.01 5.55 0.08 -15.56 16 12 C 0.03 0.61 5.38 -4.98 -0.03 0.58 16 13 N -0.48 -8.38 5.19 -231.48 -1.20 -9.58 16 14 C 0.03 0.38 6.51 -2.09 -0.01 0.37 16 15 C -0.11 -1.28 6.45 -25.52 -0.16 -1.44 16 16 C 0.07 1.03 1.04 -89.92 -0.09 0.94 16 17 C 0.01 0.23 3.96 -2.35 -0.01 0.22 16 18 C 0.04 0.45 5.17 -3.93 -0.02 0.43 16 19 N -0.68 -8.24 6.90 -113.72 -0.79 -9.03 16 20 C 0.02 0.24 6.74 -3.71 -0.03 0.21 16 21 C 0.02 0.22 6.73 37.21 0.25 0.47 16 22 O -0.36 -5.52 10.22 -35.23 -0.36 -5.88 16 23 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 25 H 0.05 0.78 7.98 -51.92 -0.41 0.37 16 26 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.04 0.51 7.92 -51.93 -0.41 0.10 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16 30 H 0.09 1.07 7.97 -51.93 -0.41 0.65 16 31 H 0.11 2.20 4.50 -51.93 -0.23 1.97 16 32 H 0.04 0.68 7.58 -51.92 -0.39 0.29 16 33 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.35 4.34 8.25 -39.29 -0.32 4.02 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.96 6.33 -51.93 -0.33 0.63 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -31.48 308.57 -8.10 -39.58 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -5.70 Total: 13.69 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -0.42 Total: 4.24 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -1.32 Total: -56.70 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.28 Total: -21.44 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.48 -8.10 -39.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719959168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.619 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds