Wall clock time and date at job start Mon Mar 30 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00087 * 2 1 4 4 H 1.48492 * 109.47064 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46991 * 119.99914 * 3 2 1 6 6 H 1.48495 * 109.47164 * 239.99822 * 3 2 1 7 7 C 1.38955 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00283 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99748 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00100 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99908 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47417 * 186.03414 * 12 10 9 14 14 C 1.48605 * 111.00423 * 176.46942 * 13 12 10 15 15 C 1.54496 * 104.60789 * 201.18683 * 14 13 12 16 16 C 1.53817 * 104.90604 * 23.76833 * 15 14 13 17 17 C 1.48660 * 111.00342 * 60.97074 * 13 12 10 18 18 C 1.52564 * 110.17137 * 118.65836 * 16 15 14 19 19 N 1.47119 * 109.29037 * 177.59902 * 18 16 15 20 20 C 1.47014 * 110.69465 * 302.29467 * 19 18 16 21 21 C 1.53104 * 109.36444 * 59.03554 * 20 19 18 22 22 O 1.42428 * 110.24714 * 241.02215 * 16 15 14 23 23 H 0.97001 * 120.00135 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00176 * 359.97438 * 9 7 2 25 25 H 1.09008 * 109.47401 * 306.03155 * 12 10 9 26 26 H 1.08999 * 109.47632 * 66.02962 * 12 10 9 27 27 H 1.08999 * 110.40711 * 319.96615 * 14 13 12 28 28 H 1.08998 * 110.40991 * 82.28515 * 14 13 12 29 29 H 1.08996 * 110.35025 * 142.62839 * 15 14 13 30 30 H 1.08998 * 110.34724 * 264.91266 * 15 14 13 31 31 H 1.08999 * 110.43078 * 277.45709 * 17 13 12 32 32 H 1.09008 * 110.42649 * 39.94197 * 17 13 12 33 33 H 1.08993 * 109.50466 * 297.54315 * 18 16 15 34 34 H 1.08997 * 109.50225 * 57.65575 * 18 16 15 35 35 H 1.00894 * 110.99838 * 66.03236 * 19 18 16 36 36 H 1.08997 * 109.49046 * 299.07343 * 20 19 18 37 37 H 1.08992 * 109.48701 * 179.00293 * 20 19 18 38 38 H 1.08994 * 109.51782 * 182.78345 * 21 20 19 39 39 H 1.09004 * 109.51426 * 62.61713 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2832 2.7464 0.0006 5 1 3.1018 1.6963 1.2126 6 1 3.1019 1.6964 -1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8630 -0.0022 13 7 2.1915 -5.9757 0.1435 14 6 1.4771 -7.2758 0.2322 15 6 2.4865 -8.2297 0.9091 16 6 3.4380 -7.3085 1.6915 17 6 2.9352 -5.8776 1.4270 18 6 3.3650 -7.6215 3.1829 19 7 4.3231 -6.7705 3.9055 20 6 5.6868 -6.9746 3.3955 21 6 5.7253 -6.6412 1.9017 22 8 4.7712 -7.4560 1.2128 23 1 -0.4850 0.8400 -0.0004 24 1 0.3533 -2.3907 -0.0016 25 1 0.5382 -4.8756 0.8287 26 1 0.7008 -4.9687 -0.9414 27 1 0.5802 -7.1756 0.8433 28 1 1.2194 -7.6365 -0.7636 29 1 1.9703 -8.9072 1.5891 30 1 3.0381 -8.7936 0.1569 31 1 3.7760 -5.1911 1.3280 32 1 2.2706 -5.5536 2.2280 33 1 2.3568 -7.4246 3.5472 34 1 3.6136 -8.6699 3.3473 35 1 4.0577 -5.7987 3.8492 36 1 5.9786 -8.0143 3.5436 37 1 6.3768 -6.3229 3.9314 38 1 6.7231 -6.8389 1.5101 39 1 5.4781 -5.5895 1.7568 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719959168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:33 Heat of formation + Delta-G solvation = -89.358560 kcal Electronic energy + Delta-G solvation = -21623.743782 eV Core-core repulsion = 18372.313403 eV Total energy + Delta-G solvation = -3251.430380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66567 -40.13413 -38.12708 -35.96982 -35.50425 -33.60300 -33.18858 -30.65123 -29.11495 -27.87080 -26.31737 -25.35080 -23.74224 -22.02645 -21.13058 -20.61236 -19.88979 -18.10132 -17.45165 -17.32200 -17.12237 -16.51027 -16.50393 -15.99784 -15.81772 -15.34532 -15.11447 -14.84682 -14.71620 -13.87098 -13.70385 -13.59503 -13.36482 -13.14761 -12.99352 -12.69253 -12.47318 -12.45492 -12.30730 -12.21072 -12.14492 -12.09605 -11.95553 -11.51011 -10.94293 -10.31957 -10.04168 -9.41739 -9.24581 -8.49169 -5.98145 1.37292 1.39592 1.50465 2.00896 2.26309 2.71488 2.79337 3.11784 3.17632 3.31825 3.53300 3.75318 3.78835 4.07088 4.13380 4.19458 4.24825 4.28004 4.33804 4.37367 4.44649 4.55175 4.65245 4.73312 4.79589 4.80219 4.91175 4.95189 5.07417 5.19817 5.37651 5.76592 5.83687 5.84834 6.04580 6.16482 6.28154 6.57506 7.09748 7.52290 8.08310 8.68051 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025342 B = 0.004811 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.599565 B = 5818.420433 C = 6445.307569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.438 3.562 11 O -0.617 6.617 12 C 0.046 3.954 13 N -0.508 5.508 14 C 0.029 3.971 15 C -0.101 4.101 16 C 0.075 3.925 17 C 0.018 3.982 18 C 0.043 3.957 19 N -0.688 5.688 20 C 0.028 3.972 21 C 0.015 3.985 22 O -0.379 6.379 23 H 0.278 0.722 24 H 0.396 0.604 25 H 0.070 0.930 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.339 0.661 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -15.851 6.135 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.503 6.503 12 C -0.086 4.086 13 N -0.233 5.233 14 C -0.098 4.098 15 C -0.139 4.139 16 C 0.033 3.967 17 C -0.110 4.110 18 C -0.087 4.087 19 N -0.316 5.316 20 C -0.101 4.101 21 C -0.063 4.063 22 O -0.298 6.298 23 H 0.088 0.912 24 H 0.230 0.770 25 H 0.088 0.912 26 H 0.129 0.871 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.156 0.844 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.150 -16.226 6.065 17.607 hybrid contribution -0.711 1.975 -0.324 2.124 sum 2.438 -14.251 5.741 15.556 Atomic orbital electron populations 1.69660 1.06820 1.29423 1.50110 1.26023 0.96530 1.02341 0.96159 0.85003 0.77803 0.76702 0.78918 1.19314 1.19672 1.19835 1.19599 0.92609 0.83998 1.50195 0.90487 1.41918 1.09269 1.04644 1.65055 1.20732 0.88300 0.85952 0.82491 1.90474 1.15697 1.87797 1.56310 1.21976 0.93878 0.88921 1.03805 1.65139 1.22970 1.01583 1.33573 1.23348 0.95971 0.88293 1.02176 1.22294 0.94975 0.96857 0.99789 1.22708 0.83691 0.93962 0.96299 1.23600 0.98930 0.98076 0.90415 1.22660 0.97886 0.99346 0.88804 1.60996 1.02643 1.11823 1.56092 1.22662 0.91177 1.03967 0.92315 1.23401 0.93854 0.94143 0.94888 1.87981 1.16522 1.64938 1.60367 0.91221 0.77021 0.91189 0.87122 0.91721 0.88679 0.86846 0.90116 0.91585 0.94013 0.88540 0.88462 0.84426 0.88950 0.88354 0.87177 0.95048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.71 13.05 21.66 0.28 -49.42 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 43.10 29.55 68.60 2.03 45.12 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -29.72 5.29 -306.98 -1.62 -31.34 16 10 C 0.44 21.35 7.43 87.66 0.65 22.01 16 11 O -0.62 -34.84 14.01 -3.07 -0.04 -34.88 16 12 C 0.05 1.64 5.38 85.56 0.46 2.10 16 13 N -0.51 -17.42 5.19 -886.27 -4.60 -22.01 16 14 C 0.03 0.69 6.51 86.48 0.56 1.25 16 15 C -0.10 -2.14 6.45 31.38 0.20 -1.94 16 16 C 0.08 1.98 1.04 -10.34 -0.01 1.97 16 17 C 0.02 0.61 3.96 86.28 0.34 0.95 16 18 C 0.04 0.91 5.17 86.12 0.45 1.36 16 19 N -0.69 -15.74 6.90 -513.71 -3.55 -19.29 16 20 C 0.03 0.60 6.74 86.32 0.58 1.19 16 21 C 0.02 0.41 6.73 72.02 0.48 0.89 16 22 O -0.38 -11.55 10.22 -148.98 -1.52 -13.07 16 23 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 24 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 25 H 0.07 2.19 7.98 -2.38 -0.02 2.18 16 26 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 27 H 0.06 1.27 7.92 -2.39 -0.02 1.25 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.11 1.62 7.70 -2.39 -0.02 1.60 16 30 H 0.08 1.82 7.97 -2.39 -0.02 1.80 16 31 H 0.07 2.82 4.50 -2.39 -0.01 2.81 16 32 H 0.04 1.36 7.58 -2.38 -0.02 1.34 16 33 H 0.10 1.80 8.03 -2.39 -0.02 1.78 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.34 8.53 8.25 -89.70 -0.74 7.79 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.03 1.04 6.33 -2.38 -0.02 1.02 16 Total: -1.00 -69.66 308.57 -4.42 -74.08 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.40 Total: 39.49 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.00 Total: 11.32 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -9.48 Total: -122.06 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -1.57 Total: -47.95 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -69.66 -4.42 -74.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719959168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.276 kcal (2) G-P(sol) polarization free energy of solvation -69.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds