Wall clock time and date at job start Mon Mar 30 2020 05:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48722 * 111.01236 * 2 1 4 4 C 1.54379 * 104.51390 * 158.96852 * 3 2 1 5 5 H 1.08996 * 110.32530 * 95.21685 * 4 3 2 6 6 N 1.46504 * 110.32003 * 217.31976 * 4 3 2 7 7 C 1.34774 * 120.00240 * 272.17130 * 6 4 3 8 8 O 1.21444 * 119.99507 * 0.02562 * 7 6 4 9 9 C 1.48827 * 120.00052 * 180.02562 * 7 6 4 10 10 O 1.21499 * 119.99786 * 0.02562 * 9 7 6 11 11 N 1.34774 * 120.00052 * 179.97438 * 9 7 6 12 12 C 1.36121 * 120.00174 * 180.02562 * 11 9 7 13 13 H 1.07997 * 119.99655 * 359.97438 * 12 11 9 14 14 C 1.39585 * 119.99957 * 180.02562 * 12 11 9 15 15 N 1.31019 * 120.00267 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 299.99882 * 16 14 12 19 19 H 1.48506 * 109.46902 * 60.00133 * 16 14 12 20 20 C 1.54255 * 105.15196 * 336.26867 * 4 3 2 21 21 C 1.52995 * 110.32799 * 118.84577 * 20 4 3 22 22 C 1.53005 * 110.32313 * 240.95340 * 20 4 3 23 23 C 1.48554 * 110.99949 * 115.51226 * 2 1 3 24 24 H 1.08999 * 109.47672 * 304.48776 * 1 2 3 25 25 H 1.08997 * 109.47377 * 64.49265 * 1 2 3 26 26 H 1.09009 * 109.47317 * 184.48850 * 1 2 3 27 27 H 1.08998 * 110.39083 * 40.24574 * 3 2 1 28 28 H 1.09003 * 110.50947 * 277.74957 * 3 2 1 29 29 H 0.96996 * 119.99617 * 92.17358 * 6 4 3 30 30 H 0.97005 * 119.99841 * 359.97438 * 11 9 7 31 31 H 0.97001 * 119.99874 * 179.97438 * 15 14 12 32 32 H 1.09000 * 109.47279 * 59.99829 * 21 20 4 33 33 H 1.08997 * 109.47546 * 180.02562 * 21 20 4 34 34 H 1.09003 * 109.47155 * 300.00273 * 21 20 4 35 35 H 1.08998 * 109.46751 * 60.00322 * 22 20 4 36 36 H 1.09000 * 109.46731 * 179.97438 * 22 20 4 37 37 H 1.08994 * 109.46832 * 299.99832 * 22 20 4 38 38 H 1.08995 * 110.41698 * 82.18125 * 23 2 1 39 39 H 1.09009 * 110.41143 * 319.73547 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0023 1.3883 0.0000 4 6 3.4432 1.2493 0.5364 5 1 4.1495 1.1760 -0.2905 6 7 3.7797 2.3897 1.3923 7 6 4.2960 3.5102 0.8499 8 8 4.4819 3.5747 -0.3485 9 6 4.6384 4.6685 1.7195 10 8 4.4528 4.6037 2.9184 11 7 5.1552 5.7888 1.1771 12 6 5.4688 6.8480 1.9725 13 1 5.3031 6.7907 3.0381 14 6 6.0035 8.0085 1.4107 15 7 6.2041 8.0782 0.1178 16 14 6.4333 9.4623 2.5022 17 1 6.9811 10.5623 1.6685 18 1 5.2118 9.9331 3.2032 19 1 7.4492 9.0470 3.5025 20 6 3.4433 -0.0560 1.3583 21 6 4.4329 -1.0592 0.7625 22 6 3.7972 0.2353 2.8181 23 6 2.0014 -0.5973 1.2516 24 1 -0.3634 0.5819 0.8470 25 1 -0.3634 0.4425 -0.9275 26 1 -0.3634 -1.0246 0.0804 27 1 1.4105 2.0225 0.6601 28 1 2.0107 1.7942 -1.0116 29 1 3.6309 2.3382 2.3494 30 1 5.3044 5.8401 0.2200 31 1 6.5754 8.8848 -0.2726 32 1 5.4354 -0.6315 0.7743 33 1 4.4214 -1.9754 1.3529 34 1 4.1467 -1.2857 -0.2646 35 1 3.0628 0.9212 3.2401 36 1 3.7928 -0.6953 3.3856 37 1 4.7877 0.6873 2.8685 38 1 2.0079 -1.6850 1.1811 39 1 1.4098 -0.2746 2.1085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722282367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:42 Heat of formation + Delta-G solvation = -64.733335 kcal Electronic energy + Delta-G solvation = -21163.320820 eV Core-core repulsion = 17912.958270 eV Total energy + Delta-G solvation = -3250.362550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37815 -38.86360 -37.05275 -34.97576 -34.25792 -33.00527 -31.39509 -29.20784 -27.42573 -27.02003 -25.86010 -24.29927 -22.56495 -21.23650 -19.47889 -19.11368 -18.32436 -17.01825 -16.21658 -15.62333 -15.36693 -15.02239 -14.71489 -14.49068 -14.23471 -13.94953 -13.61042 -13.33016 -13.20018 -12.77414 -12.63284 -12.31360 -12.26865 -11.90848 -11.77536 -11.54460 -11.44873 -11.18546 -10.96682 -10.85085 -10.59913 -10.57283 -10.43405 -10.33388 -9.71904 -8.80578 -8.61806 -8.27553 -8.23631 -6.68040 -4.00492 2.43593 3.14542 3.16577 3.17344 3.34770 3.96689 4.10204 4.24706 4.31166 4.54540 4.78316 4.99828 5.08619 5.17080 5.20196 5.24611 5.30493 5.32619 5.47927 5.53693 5.60243 5.70307 5.77167 5.82864 5.88338 5.98333 6.04275 6.10101 6.13257 6.23128 6.55906 6.83791 6.88088 7.29742 7.68120 7.86896 8.31899 8.62047 8.95020 9.30712 9.84015 10.46677 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034675 B = 0.004057 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.315488 B = 6900.305426 C = 7104.021119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.513 5.513 3 C 0.020 3.980 4 C 0.149 3.851 5 H 0.101 0.899 6 N -0.711 5.711 7 C 0.513 3.487 8 O -0.544 6.544 9 C 0.393 3.607 10 O -0.599 6.599 11 N -0.498 5.498 12 C -0.307 4.307 13 H 0.112 0.888 14 C 0.032 3.968 15 N -0.868 5.868 16 Si 0.940 3.060 17 H -0.281 1.281 18 H -0.269 1.269 19 H -0.269 1.269 20 C -0.076 4.076 21 C -0.133 4.133 22 C -0.148 4.148 23 C 0.040 3.960 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.411 0.589 30 H 0.405 0.595 31 H 0.281 0.719 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 -15.239 1.069 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.237 5.237 3 C -0.109 4.109 4 C 0.043 3.957 5 H 0.119 0.881 6 N -0.368 5.368 7 C 0.297 3.703 8 O -0.421 6.421 9 C 0.177 3.823 10 O -0.488 6.488 11 N -0.132 5.132 12 C -0.438 4.438 13 H 0.130 0.870 14 C -0.175 4.175 15 N -0.506 5.506 16 Si 0.765 3.235 17 H -0.206 1.206 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.077 4.077 21 C -0.190 4.190 22 C -0.205 4.205 23 C -0.088 4.088 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.250 0.750 30 H 0.240 0.760 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.688 -15.374 0.354 16.769 hybrid contribution -0.186 1.211 0.983 1.570 sum -6.874 -14.163 1.337 15.800 Atomic orbital electron populations 1.22507 0.87963 1.01761 1.01259 1.65367 1.08164 1.15479 1.34691 1.23647 0.95235 0.89685 1.02294 1.21686 0.96056 0.84472 0.93480 0.88100 1.46030 1.64837 1.13780 1.12117 1.20742 0.77002 0.84294 0.88245 1.90689 1.53356 1.82372 1.15674 1.18958 0.90158 0.85027 0.88154 1.90572 1.61058 1.82622 1.14561 1.41562 1.48993 1.11126 1.11511 1.19836 1.38984 0.91242 0.93692 0.87032 1.25587 0.96118 0.99553 0.96270 1.69479 1.40510 1.29895 1.10732 0.85779 0.79285 0.79178 0.79253 1.20569 1.19382 1.19364 1.21548 0.95406 0.94826 0.95898 1.21814 0.98293 0.97742 1.01183 1.21898 1.02568 1.01846 0.94230 1.23272 0.94052 1.00195 0.91287 0.95308 0.91148 0.91336 0.93064 0.89256 0.74971 0.75976 0.90837 0.92304 0.92435 0.91664 0.92206 0.91914 0.91182 0.89820 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.53 60.06 0.57 0.71 16 2 N -0.51 -5.99 5.66 -238.08 -1.35 -7.34 16 3 C 0.02 0.28 6.23 -2.09 -0.01 0.27 16 4 C 0.15 2.16 3.01 -66.55 -0.20 1.96 16 5 H 0.10 1.62 7.17 -51.93 -0.37 1.24 16 6 N -0.71 -12.24 4.55 -53.10 -0.24 -12.48 16 7 C 0.51 11.13 7.87 -11.88 -0.09 11.04 16 8 O -0.54 -12.70 16.14 5.41 0.09 -12.61 16 9 C 0.39 9.89 7.82 -11.88 -0.09 9.80 16 10 O -0.60 -15.99 16.03 5.37 0.09 -15.91 16 11 N -0.50 -13.33 5.25 -11.59 -0.06 -13.39 16 12 C -0.31 -8.45 9.67 -15.15 -0.15 -8.60 16 13 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 14 C 0.03 0.82 5.51 -17.40 -0.10 0.73 16 15 N -0.87 -23.23 13.03 55.53 0.72 -22.51 16 16 Si 0.94 20.02 29.56 -169.99 -5.02 15.00 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 C -0.08 -0.85 1.03 -153.12 -0.16 -1.01 16 21 C -0.13 -1.34 8.23 37.16 0.31 -1.04 16 22 C -0.15 -1.59 7.11 37.16 0.26 -1.33 16 23 C 0.04 0.41 5.59 -2.18 -0.01 0.40 16 24 H 0.03 0.28 7.98 -51.93 -0.41 -0.14 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.05 0.74 7.82 -51.93 -0.41 0.33 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.41 6.77 5.31 -40.82 -0.22 6.55 16 30 H 0.40 10.92 7.35 -40.82 -0.30 10.62 16 31 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.66 6.94 -51.93 -0.36 0.30 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.84 7.74 -51.93 -0.40 0.44 16 38 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 39 H 0.05 0.47 7.66 -51.92 -0.40 0.07 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -29.94 321.40 -6.35 -36.29 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.75 Total: 15.17 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 0.33 Total: 12.93 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.93 Total: -55.72 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: 0.17 Total: -28.52 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.94 -6.35 -36.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722282367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.444 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds