Wall clock time and date at job start Mon Mar 30 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48722 * 111.01236 * 2 1 4 4 C 1.54379 * 104.51390 * 158.96852 * 3 2 1 5 5 H 1.08996 * 110.32530 * 95.21685 * 4 3 2 6 6 N 1.46504 * 110.32003 * 217.31976 * 4 3 2 7 7 C 1.34774 * 120.00240 * 272.17130 * 6 4 3 8 8 O 1.21444 * 119.99507 * 0.02562 * 7 6 4 9 9 C 1.48827 * 120.00052 * 180.02562 * 7 6 4 10 10 O 1.21499 * 119.99786 * 0.02562 * 9 7 6 11 11 N 1.34774 * 120.00052 * 179.97438 * 9 7 6 12 12 C 1.36121 * 120.00174 * 180.02562 * 11 9 7 13 13 H 1.07997 * 119.99655 * 359.97438 * 12 11 9 14 14 C 1.39585 * 119.99957 * 180.02562 * 12 11 9 15 15 N 1.31019 * 120.00267 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 299.99882 * 16 14 12 19 19 H 1.48506 * 109.46902 * 60.00133 * 16 14 12 20 20 C 1.54255 * 105.15196 * 336.26867 * 4 3 2 21 21 C 1.52995 * 110.32799 * 118.84577 * 20 4 3 22 22 C 1.53005 * 110.32313 * 240.95340 * 20 4 3 23 23 C 1.48554 * 110.99949 * 115.51226 * 2 1 3 24 24 H 1.08999 * 109.47672 * 304.48776 * 1 2 3 25 25 H 1.08997 * 109.47377 * 64.49265 * 1 2 3 26 26 H 1.09009 * 109.47317 * 184.48850 * 1 2 3 27 27 H 1.08998 * 110.39083 * 40.24574 * 3 2 1 28 28 H 1.09003 * 110.50947 * 277.74957 * 3 2 1 29 29 H 0.96996 * 119.99617 * 92.17358 * 6 4 3 30 30 H 0.97005 * 119.99841 * 359.97438 * 11 9 7 31 31 H 0.97001 * 119.99874 * 179.97438 * 15 14 12 32 32 H 1.09000 * 109.47279 * 59.99829 * 21 20 4 33 33 H 1.08997 * 109.47546 * 180.02562 * 21 20 4 34 34 H 1.09003 * 109.47155 * 300.00273 * 21 20 4 35 35 H 1.08998 * 109.46751 * 60.00322 * 22 20 4 36 36 H 1.09000 * 109.46731 * 179.97438 * 22 20 4 37 37 H 1.08994 * 109.46832 * 299.99832 * 22 20 4 38 38 H 1.08995 * 110.41698 * 82.18125 * 23 2 1 39 39 H 1.09009 * 110.41143 * 319.73547 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0023 1.3883 0.0000 4 6 3.4432 1.2493 0.5364 5 1 4.1495 1.1760 -0.2905 6 7 3.7797 2.3897 1.3923 7 6 4.2960 3.5102 0.8499 8 8 4.4819 3.5747 -0.3485 9 6 4.6384 4.6685 1.7195 10 8 4.4528 4.6037 2.9184 11 7 5.1552 5.7888 1.1771 12 6 5.4688 6.8480 1.9725 13 1 5.3031 6.7907 3.0381 14 6 6.0035 8.0085 1.4107 15 7 6.2041 8.0782 0.1178 16 14 6.4333 9.4623 2.5022 17 1 6.9811 10.5623 1.6685 18 1 5.2118 9.9331 3.2032 19 1 7.4492 9.0470 3.5025 20 6 3.4433 -0.0560 1.3583 21 6 4.4329 -1.0592 0.7625 22 6 3.7972 0.2353 2.8181 23 6 2.0014 -0.5973 1.2516 24 1 -0.3634 0.5819 0.8470 25 1 -0.3634 0.4425 -0.9275 26 1 -0.3634 -1.0246 0.0804 27 1 1.4105 2.0225 0.6601 28 1 2.0107 1.7942 -1.0116 29 1 3.6309 2.3382 2.3494 30 1 5.3044 5.8401 0.2200 31 1 6.5754 8.8848 -0.2726 32 1 5.4354 -0.6315 0.7743 33 1 4.4214 -1.9754 1.3529 34 1 4.1467 -1.2857 -0.2646 35 1 3.0628 0.9212 3.2401 36 1 3.7928 -0.6953 3.3856 37 1 4.7877 0.6873 2.8685 38 1 2.0079 -1.6850 1.1811 39 1 1.4098 -0.2746 2.1085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722282367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:41 Heat of formation + Delta-G solvation = -88.108475 kcal Electronic energy + Delta-G solvation = -21164.334442 eV Core-core repulsion = 17912.958270 eV Total energy + Delta-G solvation = -3251.376172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75294 -40.43340 -38.91019 -36.51241 -35.85209 -34.34126 -33.42728 -30.36264 -28.38723 -27.99367 -27.61972 -25.63050 -24.04903 -22.34649 -21.16860 -20.50053 -20.12393 -18.70631 -17.79761 -17.04039 -16.70811 -16.56251 -16.36246 -15.73486 -15.64810 -15.45036 -14.89693 -14.68602 -14.34894 -14.19145 -13.93621 -13.68237 -13.44148 -13.10618 -12.97128 -12.77460 -12.60002 -12.53898 -12.36740 -12.26779 -12.12388 -11.91562 -11.77512 -11.66677 -11.53897 -10.30833 -10.28371 -10.20930 -9.56100 -8.67015 -6.12230 0.57490 1.40440 1.48686 1.53344 1.76908 2.27916 2.34990 2.99716 3.13920 3.29338 3.38550 3.53520 3.84040 4.00815 4.12323 4.15863 4.27639 4.43229 4.49762 4.65610 4.67121 4.73739 4.80373 4.86086 4.97905 4.99776 5.02876 5.13572 5.23705 5.26007 5.30156 5.39031 5.65867 5.74268 5.96754 6.13955 6.36435 6.79290 6.99494 7.26090 7.78001 8.48518 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034675 B = 0.004057 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.315488 B = 6900.305426 C = 7104.021119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.518 5.518 3 C 0.025 3.975 4 C 0.141 3.859 5 H 0.085 0.915 6 N -0.689 5.689 7 C 0.518 3.482 8 O -0.564 6.564 9 C 0.388 3.612 10 O -0.617 6.617 11 N -0.509 5.509 12 C -0.347 4.347 13 H 0.100 0.900 14 C -0.004 4.004 15 N -0.895 5.895 16 Si 1.010 2.990 17 H -0.267 1.267 18 H -0.264 1.264 19 H -0.263 1.263 20 C -0.070 4.070 21 C -0.130 4.130 22 C -0.147 4.147 23 C 0.043 3.957 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.416 0.584 30 H 0.401 0.599 31 H 0.289 0.711 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 -16.471 1.917 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.242 5.242 3 C -0.105 4.105 4 C 0.036 3.964 5 H 0.103 0.897 6 N -0.344 5.344 7 C 0.301 3.699 8 O -0.443 6.443 9 C 0.173 3.827 10 O -0.507 6.507 11 N -0.143 5.143 12 C -0.476 4.476 13 H 0.118 0.882 14 C -0.208 4.208 15 N -0.533 5.533 16 Si 0.831 3.169 17 H -0.191 1.191 18 H -0.188 1.188 19 H -0.188 1.188 20 C -0.071 4.071 21 C -0.187 4.187 22 C -0.205 4.205 23 C -0.084 4.084 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.257 0.743 30 H 0.235 0.765 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.272 -16.649 1.206 18.208 hybrid contribution -0.061 1.477 0.698 1.635 sum -7.333 -15.172 1.905 16.958 Atomic orbital electron populations 1.22585 0.86549 1.03152 1.01324 1.65385 1.09531 1.13536 1.35710 1.23481 0.94628 0.91227 1.01130 1.21947 0.96169 0.84915 0.93341 0.89724 1.45990 1.62662 1.13068 1.12704 1.20155 0.77695 0.84573 0.87447 1.90680 1.54710 1.82778 1.16103 1.19584 0.89109 0.85592 0.88417 1.90537 1.61492 1.83184 1.15482 1.41657 1.49666 1.11745 1.11212 1.19963 1.41575 0.92642 0.93468 0.88247 1.26552 0.94873 1.01682 0.97695 1.69549 1.40465 1.31041 1.12212 0.84749 0.79153 0.75530 0.77470 1.19089 1.18828 1.18792 1.21576 0.96863 0.93024 0.95615 1.21800 0.97204 0.98255 1.01448 1.21898 1.01389 1.03072 0.94151 1.23343 0.92880 1.01320 0.90873 0.95261 0.91176 0.89207 0.93815 0.90726 0.74323 0.76489 0.90048 0.93368 0.89915 0.91911 0.92619 0.89135 0.92814 0.87539 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.53 127.69 1.22 1.43 16 2 N -0.52 -11.10 5.66 -907.16 -5.13 -16.23 16 3 C 0.02 0.67 6.23 86.42 0.54 1.21 16 4 C 0.14 4.05 3.01 45.88 0.14 4.18 16 5 H 0.08 2.74 7.17 -2.39 -0.02 2.73 16 6 N -0.69 -23.86 4.55 -440.22 -2.00 -25.86 16 7 C 0.52 23.04 7.87 87.08 0.68 23.72 16 8 O -0.56 -27.05 16.14 -3.54 -0.06 -27.11 16 9 C 0.39 20.11 7.82 87.08 0.68 20.79 16 10 O -0.62 -33.63 16.03 -3.71 -0.06 -33.69 16 11 N -0.51 -28.20 5.25 -308.88 -1.62 -29.82 16 12 C -0.35 -19.58 9.67 84.35 0.82 -18.76 16 13 H 0.10 5.73 7.15 -2.91 -0.02 5.71 16 14 C 0.00 -0.18 5.51 85.14 0.47 0.28 16 15 N -0.90 -48.27 13.03 21.77 0.28 -47.99 16 16 Si 1.01 40.68 29.56 68.60 2.03 42.71 16 17 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 20 C -0.07 -1.44 1.03 -51.28 -0.05 -1.49 16 21 C -0.13 -2.34 8.23 71.98 0.59 -1.75 16 22 C -0.15 -2.89 7.11 71.98 0.51 -2.37 16 23 C 0.04 0.77 5.59 86.45 0.48 1.25 16 24 H 0.03 0.50 7.98 -2.39 -0.02 0.48 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.04 1.24 7.82 -2.39 -0.02 1.23 16 28 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 29 H 0.42 13.65 5.31 -92.71 -0.49 13.16 16 30 H 0.40 22.47 7.35 -92.70 -0.68 21.79 16 31 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.14 6.94 -2.39 -0.02 1.12 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.24 7.74 -2.39 -0.02 1.22 16 38 H 0.11 1.47 7.86 -2.39 -0.02 1.45 16 39 H 0.05 0.91 7.66 -2.38 -0.02 0.89 16 Total: -1.00 -65.20 321.40 -0.59 -65.78 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -0.11 Total: 43.69 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 6.08 Total: 28.50 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -8.47 Total: -119.89 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -0.12 Total: -60.80 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -65.20 -0.59 -65.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722282367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.326 kcal (2) G-P(sol) polarization free energy of solvation -65.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds