Wall clock time and date at job start Mon Mar 30 2020 04:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47064 * 2 1 4 4 C 1.50700 * 109.47430 * 240.00408 * 2 1 3 5 5 H 1.08002 * 119.99542 * 239.99964 * 4 2 1 6 6 C 1.37870 * 120.00060 * 59.99663 * 4 2 1 7 7 N 1.31514 * 120.00393 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46886 * 89.99992 * 8 6 4 10 10 H 1.48502 * 109.47316 * 209.99879 * 8 6 4 11 11 H 1.48498 * 109.47248 * 330.00647 * 8 6 4 12 12 N 1.46901 * 109.47428 * 120.00112 * 2 1 3 13 13 C 1.46904 * 110.99779 * 275.00571 * 12 2 1 14 14 C 1.50703 * 109.46783 * 179.97438 * 13 12 2 15 15 N 1.29034 * 124.91509 * 89.99886 * 14 13 12 16 16 C 1.31774 * 117.12480 * 179.97438 * 15 14 13 17 17 C 1.50701 * 122.75190 * 179.97438 * 16 15 14 18 18 N 1.46904 * 109.46842 * 275.02624 * 17 16 15 19 19 C 1.46896 * 111.00114 * 169.99807 * 18 17 16 20 20 C 1.46905 * 110.99868 * 293.94844 * 18 17 16 21 21 C 1.33641 * 114.50001 * 0.02562 * 16 15 14 22 22 S 1.70974 * 124.91905 * 269.99484 * 14 13 12 23 23 H 1.08997 * 109.47021 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47080 * 299.99998 * 1 2 3 25 25 H 1.09002 * 109.46932 * 59.99617 * 1 2 3 26 26 H 0.96999 * 120.00236 * 179.97438 * 7 6 4 27 27 H 1.00899 * 110.99749 * 38.95119 * 12 2 1 28 28 H 1.08997 * 109.47356 * 59.99754 * 13 12 2 29 29 H 1.08999 * 109.46908 * 299.99408 * 13 12 2 30 30 H 1.09003 * 109.47150 * 35.01967 * 17 16 15 31 31 H 1.08997 * 109.47649 * 155.02760 * 17 16 15 32 32 H 1.09007 * 109.47054 * 59.99529 * 19 18 17 33 33 H 1.08993 * 109.47300 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47021 * 300.00222 * 19 18 17 35 35 H 1.09001 * 109.46993 * 60.00346 * 20 18 17 36 36 H 1.08995 * 109.47139 * 179.97438 * 20 18 17 37 37 H 1.08998 * 109.47375 * 300.00393 * 20 18 17 38 38 H 1.08002 * 126.03436 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1201 -4.0079 9 1 1.3428 -2.1615 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5873 -0.5219 3.5560 15 7 3.8287 -0.6314 3.8907 16 6 4.0983 -1.3190 4.9820 17 6 5.5023 -1.5270 5.4885 18 7 6.1019 -2.6830 4.8086 19 6 7.5394 -2.7758 5.0963 20 6 5.4104 -3.9262 5.1752 21 6 3.0247 -1.8177 5.6022 22 16 1.5984 -1.3435 4.6830 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1619 -3.4844 27 1 1.4496 -1.4979 1.4100 28 1 1.0870 0.6162 2.5525 29 1 2.7588 1.0462 2.1183 30 1 6.0977 -0.6369 5.2849 31 1 5.4778 -1.7099 6.5627 32 1 7.6886 -2.8859 6.1705 33 1 7.9581 -3.6402 4.5812 34 1 8.0381 -1.8700 4.7514 35 1 4.3614 -3.8569 4.8874 36 1 5.8740 -4.7660 4.6576 37 1 5.4824 -4.0781 6.2521 38 1 3.0305 -2.4074 6.5070 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722407669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:37 Heat of formation + Delta-G solvation = 55.522604 kcal Electronic energy + Delta-G solvation = -18099.837915 eV Core-core repulsion = 15297.442926 eV Total energy + Delta-G solvation = -2802.394990 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88497 -37.19825 -36.02843 -32.85102 -31.12477 -28.82284 -27.85682 -27.26311 -25.67225 -25.03104 -22.88384 -21.40176 -20.25619 -19.47843 -17.60621 -16.36929 -15.78949 -15.53743 -15.10081 -14.85721 -14.82587 -14.19362 -13.60127 -13.50664 -13.15443 -12.72788 -12.57863 -12.34006 -12.28796 -11.81250 -11.77613 -11.65333 -11.47821 -11.07023 -10.91544 -10.76399 -10.53041 -10.15609 -9.94083 -9.33099 -9.20899 -9.00752 -8.71042 -8.41421 -8.33839 -7.29859 -5.96147 -3.98897 0.85649 1.53019 1.90201 2.89135 3.36196 3.42356 3.48547 4.00943 4.19983 4.48239 4.91293 4.97427 5.12432 5.16872 5.23647 5.33849 5.35914 5.42920 5.43813 5.49527 5.67628 5.73405 5.81887 5.90467 6.14936 6.28665 6.66155 6.81596 6.84538 6.88962 7.04986 7.30055 7.72331 7.88985 8.04713 8.24660 8.46903 8.58131 9.08152 9.66219 11.11058 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.004386 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.254952 B = 6381.723811 C = 7333.458907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 H 0.038 0.962 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.671 5.671 13 C 0.132 3.868 14 C 0.084 3.916 15 N -0.446 5.446 16 C 0.083 3.917 17 C 0.131 3.869 18 N -0.538 5.538 19 C 0.028 3.972 20 C 0.023 3.977 21 C -0.271 4.271 22 S 0.101 5.899 23 H 0.029 0.971 24 H 0.005 0.995 25 H 0.091 0.909 26 H 0.260 0.740 27 H 0.326 0.674 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.023 0.977 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 -5.420 18.815 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.532 4.532 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.302 5.302 13 C -0.001 4.001 14 C -0.195 4.195 15 N -0.160 5.160 16 C -0.051 4.051 17 C 0.001 3.999 18 N -0.262 5.262 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.411 4.411 22 S 0.356 5.644 23 H 0.048 0.952 24 H 0.024 0.976 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.795 -5.044 17.756 19.071 hybrid contribution 0.182 -0.693 0.564 0.912 sum 4.977 -5.737 18.320 19.832 Atomic orbital electron populations 1.22461 1.00521 0.99366 1.00661 1.19232 0.89642 0.94640 0.85980 0.94443 1.21128 1.30154 1.12484 0.89394 0.91833 1.24929 0.95332 0.95195 0.99017 1.69875 1.37433 1.23170 1.23371 0.86490 0.79301 0.79207 0.82362 1.20868 1.21374 1.19818 1.60844 1.58444 1.08540 1.02382 1.20560 0.98647 0.95004 0.85920 1.27363 0.90676 1.00742 1.00763 1.66061 1.18181 1.17746 1.14017 1.20027 0.96066 0.97147 0.91873 1.20552 0.89878 0.94914 0.94580 1.61817 1.02996 1.02830 1.58524 1.22375 0.87934 1.03126 0.98620 1.22443 1.00385 0.91763 0.97970 1.26711 0.94840 1.11837 1.07756 1.83968 1.12435 1.48438 1.19539 0.95201 0.97572 0.89004 0.93065 0.85766 0.93955 0.88486 0.88979 0.93377 0.95852 0.91151 0.91048 0.91096 0.91298 0.95869 0.81368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.94 37.16 0.33 -3.70 16 2 C 0.21 5.33 2.57 -68.87 -0.18 5.16 16 3 H 0.04 1.02 7.80 -51.93 -0.40 0.62 16 4 C -0.49 -13.79 8.84 -34.44 -0.30 -14.10 16 5 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.67 -14.60 6.22 -109.22 -0.68 -15.28 16 13 C 0.13 2.43 6.06 -4.97 -0.03 2.40 16 14 C 0.08 1.42 6.90 -13.45 -0.09 1.33 16 15 N -0.45 -7.84 10.53 -8.06 -0.08 -7.93 16 16 C 0.08 1.19 5.57 -84.23 -0.47 0.72 16 17 C 0.13 1.56 5.41 -4.97 -0.03 1.54 16 18 N -0.54 -6.63 5.01 -252.72 -1.27 -7.90 16 19 C 0.03 0.26 9.57 60.06 0.57 0.84 16 20 C 0.02 0.24 9.26 60.07 0.56 0.80 16 21 C -0.27 -3.35 9.88 29.12 0.29 -3.06 16 22 S 0.10 1.35 23.18 -107.50 -2.49 -1.14 16 23 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 24 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.33 6.74 8.46 -39.29 -0.33 6.41 16 28 H 0.04 0.72 7.44 -51.93 -0.39 0.34 16 29 H 0.10 1.87 8.06 -51.93 -0.42 1.45 16 30 H 0.09 1.10 8.06 -51.93 -0.42 0.69 16 31 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.02 0.18 8.14 -51.92 -0.42 -0.24 16 33 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 34 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.07 0.85 6.47 -51.93 -0.34 0.51 16 36 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 37 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -30.32 326.26 -9.36 -39.68 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.92 Total: 2.59 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 0.56 Total: -6.63 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -1.40 Total: -56.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.49 Total: -1.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.32 -9.36 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722407669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.205 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds