Wall clock time and date at job start Mon Mar 30 2020 04:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47064 * 2 1 4 4 C 1.50700 * 109.47430 * 240.00408 * 2 1 3 5 5 H 1.08002 * 119.99542 * 239.99964 * 4 2 1 6 6 C 1.37870 * 120.00060 * 59.99663 * 4 2 1 7 7 N 1.31514 * 120.00393 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46886 * 89.99992 * 8 6 4 10 10 H 1.48502 * 109.47316 * 209.99879 * 8 6 4 11 11 H 1.48498 * 109.47248 * 330.00647 * 8 6 4 12 12 N 1.46901 * 109.47428 * 120.00112 * 2 1 3 13 13 C 1.46904 * 110.99779 * 275.00571 * 12 2 1 14 14 C 1.50703 * 109.46783 * 179.97438 * 13 12 2 15 15 N 1.29034 * 124.91509 * 89.99886 * 14 13 12 16 16 C 1.31774 * 117.12480 * 179.97438 * 15 14 13 17 17 C 1.50701 * 122.75190 * 179.97438 * 16 15 14 18 18 N 1.46904 * 109.46842 * 275.02624 * 17 16 15 19 19 C 1.46896 * 111.00114 * 169.99807 * 18 17 16 20 20 C 1.46905 * 110.99868 * 293.94844 * 18 17 16 21 21 C 1.33641 * 114.50001 * 0.02562 * 16 15 14 22 22 S 1.70974 * 124.91905 * 269.99484 * 14 13 12 23 23 H 1.08997 * 109.47021 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47080 * 299.99998 * 1 2 3 25 25 H 1.09002 * 109.46932 * 59.99617 * 1 2 3 26 26 H 0.96999 * 120.00236 * 179.97438 * 7 6 4 27 27 H 1.00899 * 110.99749 * 38.95119 * 12 2 1 28 28 H 1.08997 * 109.47356 * 59.99754 * 13 12 2 29 29 H 1.08999 * 109.46908 * 299.99408 * 13 12 2 30 30 H 1.09003 * 109.47150 * 35.01967 * 17 16 15 31 31 H 1.08997 * 109.47649 * 155.02760 * 17 16 15 32 32 H 1.09007 * 109.47054 * 59.99529 * 19 18 17 33 33 H 1.08993 * 109.47300 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47021 * 300.00222 * 19 18 17 35 35 H 1.09001 * 109.46993 * 60.00346 * 20 18 17 36 36 H 1.08995 * 109.47139 * 179.97438 * 20 18 17 37 37 H 1.08998 * 109.47375 * 300.00393 * 20 18 17 38 38 H 1.08002 * 126.03436 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1201 -4.0079 9 1 1.3428 -2.1615 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5873 -0.5219 3.5560 15 7 3.8287 -0.6314 3.8907 16 6 4.0983 -1.3190 4.9820 17 6 5.5023 -1.5270 5.4885 18 7 6.1019 -2.6830 4.8086 19 6 7.5394 -2.7758 5.0963 20 6 5.4104 -3.9262 5.1752 21 6 3.0247 -1.8177 5.6022 22 16 1.5984 -1.3435 4.6830 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1619 -3.4844 27 1 1.4496 -1.4979 1.4100 28 1 1.0870 0.6162 2.5525 29 1 2.7588 1.0462 2.1183 30 1 6.0977 -0.6369 5.2849 31 1 5.4778 -1.7099 6.5627 32 1 7.6886 -2.8859 6.1705 33 1 7.9581 -3.6402 4.5812 34 1 8.0381 -1.8700 4.7514 35 1 4.3614 -3.8569 4.8874 36 1 5.8740 -4.7660 4.6576 37 1 5.4824 -4.0781 6.2521 38 1 3.0305 -2.4074 6.5070 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722407669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:37 Heat of formation + Delta-G solvation = 33.184215 kcal Electronic energy + Delta-G solvation = -18100.806581 eV Core-core repulsion = 15297.442926 eV Total energy + Delta-G solvation = -2803.363655 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98780 -38.26928 -37.63196 -34.73726 -32.54686 -30.41042 -28.69536 -28.13230 -27.33907 -26.97207 -23.96112 -22.49088 -22.18552 -20.61330 -18.83755 -18.22807 -16.91205 -16.73179 -16.53793 -16.16657 -15.93994 -15.61402 -15.08253 -14.77019 -14.59713 -14.16374 -13.80036 -13.54578 -13.31520 -13.15829 -13.11083 -12.83160 -12.71786 -12.60018 -12.55892 -12.37240 -12.16135 -12.04552 -11.93322 -11.08803 -10.49390 -10.46873 -10.31280 -9.77896 -9.24327 -9.02976 -8.08972 -6.19611 -0.25662 0.44286 0.80145 1.43551 1.44690 1.55982 1.77779 2.45684 3.08043 3.19367 3.19786 3.69626 3.92946 4.13475 4.28451 4.30080 4.31585 4.44580 4.53367 4.61646 4.63056 4.73052 4.77822 4.84114 4.90320 5.01362 5.03386 5.06889 5.19136 5.39007 5.70372 5.80417 6.04001 6.11768 6.25597 6.58558 6.72183 6.92415 6.94068 7.49756 8.96504 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.004386 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.254952 B = 6381.723811 C = 7333.458907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.217 3.783 3 H 0.007 0.993 4 C -0.516 4.516 5 H 0.050 0.950 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.680 5.680 13 C 0.138 3.862 14 C 0.044 3.956 15 N -0.479 5.479 16 C 0.059 3.941 17 C 0.134 3.866 18 N -0.569 5.569 19 C 0.029 3.971 20 C 0.025 3.975 21 C -0.249 4.249 22 S 0.151 5.849 23 H 0.034 0.966 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.262 0.738 27 H 0.332 0.668 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.889 -6.889 20.594 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.109 3.891 3 H 0.025 0.975 4 C -0.554 4.554 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.200 1.200 12 N -0.311 5.311 13 C 0.006 3.994 14 C -0.234 4.234 15 N -0.194 5.194 16 C -0.074 4.074 17 C 0.004 3.996 18 N -0.294 5.294 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.389 4.389 22 S 0.406 5.594 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.744 -6.515 19.548 21.144 hybrid contribution 0.214 -0.262 0.127 0.361 sum 4.958 -6.777 19.674 21.391 Atomic orbital electron populations 1.22245 0.99294 0.99544 1.00541 1.18978 0.90465 0.92877 0.86762 0.97460 1.21392 1.30479 1.12459 0.91100 0.93208 1.25653 0.95432 0.95855 1.01677 1.69990 1.37962 1.24045 1.24047 0.85539 0.78674 0.78315 0.78959 1.19870 1.20774 1.20019 1.60635 1.58453 1.09210 1.02810 1.20369 0.99041 0.94210 0.85787 1.26913 0.91706 1.03092 1.01726 1.66024 1.19105 1.18617 1.15648 1.20377 0.97775 0.97698 0.91585 1.20578 0.88461 0.94607 0.95950 1.61771 1.04407 1.03476 1.59773 1.22377 0.86444 1.03101 0.99895 1.22405 0.99239 0.91201 0.99396 1.27181 0.93723 1.10069 1.07951 1.83706 1.11442 1.46569 1.17653 0.94729 0.95019 0.91662 0.92907 0.85088 0.92503 0.90491 0.89934 0.90536 0.93931 0.90799 0.91493 0.92659 0.91104 0.93610 0.77762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.43 8.94 71.98 0.64 -6.78 16 2 C 0.22 11.18 2.57 44.17 0.11 11.29 16 3 H 0.01 0.42 7.80 -2.39 -0.02 0.40 16 4 C -0.52 -29.45 8.84 25.60 0.23 -29.22 16 5 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.30 11.32 21.44 0.24 -53.06 16 8 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 N -0.68 -30.08 6.22 -499.45 -3.11 -33.19 16 13 C 0.14 5.20 6.06 85.56 0.52 5.72 16 14 C 0.04 1.46 6.90 88.52 0.61 2.07 16 15 N -0.48 -16.76 10.53 -179.40 -1.89 -18.65 16 16 C 0.06 1.59 5.57 41.52 0.23 1.82 16 17 C 0.13 2.96 5.41 85.56 0.46 3.43 16 18 N -0.57 -13.15 5.01 -953.47 -4.78 -17.93 16 19 C 0.03 0.51 9.57 127.69 1.22 1.73 16 20 C 0.03 0.49 9.26 127.69 1.18 1.67 16 21 C -0.25 -5.40 9.88 66.78 0.66 -4.74 16 22 S 0.15 3.72 23.18 -56.49 -1.31 2.41 16 23 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 24 H 0.03 1.29 7.45 -2.39 -0.02 1.27 16 25 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 26 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.33 13.76 8.46 -89.69 -0.76 13.00 16 28 H 0.06 1.93 7.44 -2.39 -0.02 1.91 16 29 H 0.08 3.13 8.06 -2.39 -0.02 3.11 16 30 H 0.08 1.93 8.06 -2.39 -0.02 1.91 16 31 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 32 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 34 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 35 H 0.05 1.21 6.47 -2.39 -0.02 1.19 16 36 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.21 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -66.00 326.26 -2.21 -68.21 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.29 Total: 17.12 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 6.32 Total: -11.89 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -9.53 Total: -122.82 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.31 Total: 2.41 kcal Total: -66.00 -2.21 -68.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722407669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.396 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds