Wall clock time and date at job start Mon Mar 30 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 117.00078 * 2 1 4 4 O 1.20826 * 119.99467 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00055 * 180.02562 * 3 2 1 6 6 O 1.42897 * 110.28592 * 32.27430 * 5 3 2 7 7 C 1.42908 * 114.00073 * 294.18538 * 6 5 3 8 8 C 1.52996 * 109.47237 * 185.68911 * 7 6 5 9 9 C 1.50710 * 115.54953 * 31.71344 * 8 7 6 10 10 H 1.07998 * 119.99918 * 267.73283 * 9 8 7 11 11 C 1.37874 * 119.99697 * 87.73452 * 9 8 7 12 12 N 1.31511 * 119.99817 * 179.32539 * 11 9 8 13 13 Si 1.86798 * 120.00229 * 359.31400 * 11 9 8 14 14 H 1.48505 * 109.46874 * 91.49916 * 13 11 9 15 15 H 1.48499 * 109.47340 * 211.49788 * 13 11 9 16 16 H 1.48496 * 109.47286 * 331.50299 * 13 11 9 17 17 C 1.52997 * 117.49895 * 246.00659 * 8 7 6 18 18 C 1.52997 * 60.00080 * 252.50896 * 17 8 7 19 19 C 1.54258 * 110.32358 * 154.40070 * 5 3 2 20 20 C 1.54372 * 105.06090 * 118.89614 * 19 5 3 21 21 N 1.48567 * 104.59575 * 23.85209 * 20 19 5 22 22 C 1.48557 * 104.21705 * 320.51718 * 21 20 19 23 23 H 1.08998 * 109.46847 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46757 * 299.99253 * 1 2 3 25 25 H 1.08998 * 109.47107 * 59.99543 * 1 2 3 26 26 H 1.09002 * 109.46845 * 305.68820 * 7 6 5 27 27 H 1.08998 * 109.47042 * 65.68759 * 7 6 5 28 28 H 0.97000 * 120.00046 * 180.02562 * 12 11 9 29 29 H 1.08997 * 117.50154 * 359.97438 * 17 8 7 30 30 H 1.08999 * 117.50200 * 145.02022 * 17 8 7 31 31 H 1.09005 * 117.49917 * 252.50930 * 18 17 8 32 32 H 1.09002 * 117.50113 * 107.48729 * 18 17 8 33 33 H 1.09001 * 110.32378 * 237.79486 * 19 5 3 34 34 H 1.08998 * 110.32059 * 359.89671 * 19 5 3 35 35 H 1.08997 * 110.41411 * 142.63355 * 20 19 5 36 36 H 1.09007 * 110.41402 * 265.07386 * 20 19 5 37 37 H 1.00895 * 110.99604 * 200.95976 * 21 20 19 38 38 H 1.09004 * 110.41398 * 280.69567 * 22 21 20 39 39 H 1.09004 * 110.40649 * 158.26387 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 8 4.1202 0.1693 -0.7167 7 6 3.8863 -1.0985 -0.1001 8 6 4.6381 -2.1864 -0.8696 9 6 5.9302 -1.7526 -1.5128 10 1 5.9338 -1.4020 -2.5343 11 6 7.1075 -1.8033 -0.7972 12 7 8.2371 -1.4373 -1.3627 13 14 7.0983 -2.3916 0.9758 14 1 7.3399 -3.8564 1.0125 15 1 8.1678 -1.6944 1.7342 16 1 5.7800 -2.0918 1.5899 17 6 3.8034 -3.2398 -1.6006 18 6 4.5639 -3.6150 -0.3271 19 6 4.0329 2.6058 -0.6255 20 6 4.8116 3.3248 0.4969 21 7 5.2584 2.2337 1.4008 22 6 4.1024 1.3017 1.4468 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 4.2401 -1.0720 0.9305 27 1 2.8185 -1.3170 -0.1122 28 1 9.0654 -1.4733 -0.8593 29 1 2.7186 -3.1581 -1.5329 30 1 4.1885 -3.6193 -2.5470 31 1 5.4494 -4.2414 -0.4358 32 1 3.9794 -3.7799 0.5781 33 1 4.6858 2.4158 -1.4775 34 1 3.1734 3.2012 -0.9335 35 1 5.6713 3.8532 0.0849 36 1 4.1589 4.0165 1.0296 37 1 5.4721 2.5905 2.3200 38 1 3.3387 1.6766 2.1283 39 1 4.4283 0.3067 1.7501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724712292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:54 Heat of formation + Delta-G solvation = -76.509271 kcal Electronic energy + Delta-G solvation = -22366.305061 eV Core-core repulsion = 19083.139117 eV Total energy + Delta-G solvation = -3283.165944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88707 -38.57164 -37.22708 -36.30272 -35.17390 -31.90430 -30.09260 -28.93957 -27.50569 -26.42674 -25.00781 -22.95825 -21.65342 -21.56455 -19.82221 -18.95943 -18.09486 -17.14219 -16.62164 -16.17433 -16.12171 -15.04793 -14.89193 -14.32720 -14.10371 -13.85540 -13.59766 -13.23831 -12.90083 -12.72324 -12.57686 -12.28388 -11.95215 -11.82574 -11.53550 -11.27939 -11.01182 -10.92888 -10.80128 -10.72476 -10.40647 -10.27240 -9.94558 -9.47089 -9.21073 -8.81430 -8.49452 -8.40521 -8.26250 -5.92956 -3.92382 2.13480 2.71226 3.38425 3.46846 3.48871 4.09465 4.28867 4.54456 4.56312 4.70992 4.88327 4.99064 5.07806 5.15260 5.24092 5.35041 5.36692 5.46346 5.50820 5.73555 5.86510 5.91546 5.96987 6.10491 6.23013 6.25622 6.29307 6.45089 6.48426 6.58294 6.68562 6.76619 7.04695 7.16820 7.33085 7.65313 7.81571 7.99011 8.68766 9.11564 9.70751 11.19995 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.008821 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.012140 B = 3173.306098 C = 4106.203784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.449 3.551 4 O -0.510 6.510 5 C 0.122 3.878 6 O -0.306 6.306 7 C 0.078 3.922 8 C 0.005 3.995 9 C -0.465 4.465 10 H 0.077 0.923 11 C 0.080 3.920 12 N -0.900 5.900 13 Si 0.882 3.118 14 H -0.284 1.284 15 H -0.295 1.295 16 H -0.263 1.263 17 C -0.179 4.179 18 C -0.200 4.200 19 C -0.106 4.106 20 C 0.040 3.960 21 N -0.646 5.646 22 C 0.016 3.984 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.262 0.738 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.338 0.662 38 H 0.045 0.955 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.393 5.098 6.384 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.256 6.256 3 C 0.292 3.708 4 O -0.398 6.398 5 C 0.078 3.922 6 O -0.223 6.223 7 C 0.002 3.998 8 C 0.004 3.996 9 C -0.502 4.502 10 H 0.095 0.905 11 C -0.121 4.121 12 N -0.538 5.538 13 Si 0.711 3.289 14 H -0.211 1.211 15 H -0.222 1.222 16 H -0.188 1.188 17 C -0.216 4.216 18 C -0.237 4.237 19 C -0.143 4.143 20 C -0.090 4.090 21 N -0.275 5.275 22 C -0.114 4.114 23 H 0.118 0.882 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.154 0.846 38 H 0.063 0.937 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.874 5.046 5.751 14.125 hybrid contribution -0.991 0.129 1.871 2.121 sum -12.865 5.175 7.621 15.823 Atomic orbital electron populations 1.23306 0.77769 1.03632 1.02170 1.86878 1.22663 1.32670 1.83396 1.25169 0.92711 0.81608 0.71352 1.90598 1.66914 1.36502 1.45816 1.22134 0.83162 0.92574 0.94336 1.88371 1.74782 1.12842 1.46318 1.22789 0.97669 0.83472 0.95865 1.19299 0.97202 0.85202 0.97931 1.20076 0.87373 1.42684 1.00091 0.90460 1.24878 0.95288 0.94515 0.97419 1.69880 0.98513 1.48359 1.37026 0.86858 0.77714 0.78151 0.86184 1.21063 1.22188 1.18829 1.22905 0.96059 1.06788 0.95847 1.22988 1.02472 1.01648 0.96571 1.22384 1.01202 0.90968 0.99776 1.22944 0.98726 0.93294 0.93993 1.63694 1.34894 1.14213 1.14714 1.23520 0.92942 1.00568 0.94328 0.88156 0.92248 0.91963 0.93664 0.92384 0.92857 0.90954 0.89467 0.89204 0.91058 0.87764 0.89169 0.89090 0.94017 0.84600 0.93680 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.56 101.05 1.07 1.35 16 2 O -0.34 -5.36 7.26 -44.41 -0.32 -5.68 16 3 C 0.45 7.62 6.74 36.01 0.24 7.87 16 4 O -0.51 -8.91 15.37 -18.75 -0.29 -9.20 16 5 C 0.12 2.18 1.08 -90.39 -0.10 2.08 16 6 O -0.31 -6.72 9.15 -48.96 -0.45 -7.17 16 7 C 0.08 1.65 5.19 37.16 0.19 1.84 16 8 C 0.00 0.11 1.28 -155.66 -0.20 -0.09 16 9 C -0.46 -13.17 8.66 -34.44 -0.30 -13.47 16 10 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 11 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 12 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 13 Si 0.88 22.14 25.12 -169.99 -4.27 17.87 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 16 H -0.26 -6.16 5.32 56.52 0.30 -5.86 16 17 C -0.18 -3.67 9.88 -26.73 -0.26 -3.93 16 18 C -0.20 -4.23 7.54 -26.73 -0.20 -4.44 16 19 C -0.11 -1.70 6.33 -25.35 -0.16 -1.86 16 20 C 0.04 0.55 7.47 -2.18 -0.02 0.54 16 21 N -0.65 -10.21 7.62 -109.66 -0.84 -11.05 16 22 C 0.02 0.26 6.52 -2.19 -0.01 0.25 16 23 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 25 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 26 H 0.05 0.96 4.11 -51.93 -0.21 0.75 16 27 H 0.06 1.12 4.99 -51.93 -0.26 0.86 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 30 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.09 2.00 7.15 -51.93 -0.37 1.63 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.10 1.81 7.98 -51.93 -0.41 1.39 16 34 H 0.09 1.35 6.79 -51.93 -0.35 1.00 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.34 4.29 8.92 -39.29 -0.35 3.94 16 38 H 0.05 0.64 7.85 -51.93 -0.41 0.23 16 39 H 0.11 1.88 5.56 -51.93 -0.29 1.59 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -32.90 309.48 -6.27 -39.17 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.69 Total: 6.10 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 0.15 Total: -7.62 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.06 Total: -38.13 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -1.06 Total: -22.05 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.27 Total: 17.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.90 -6.27 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724712292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.340 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds