Wall clock time and date at job start Mon Mar 30 2020 05:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 117.00078 * 2 1 4 4 O 1.20826 * 119.99467 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00055 * 180.02562 * 3 2 1 6 6 O 1.42897 * 110.28592 * 32.27430 * 5 3 2 7 7 C 1.42908 * 114.00073 * 294.18538 * 6 5 3 8 8 C 1.52996 * 109.47237 * 185.68911 * 7 6 5 9 9 C 1.50710 * 115.54953 * 31.71344 * 8 7 6 10 10 H 1.07998 * 119.99918 * 267.73283 * 9 8 7 11 11 C 1.37874 * 119.99697 * 87.73452 * 9 8 7 12 12 N 1.31511 * 119.99817 * 179.32539 * 11 9 8 13 13 Si 1.86798 * 120.00229 * 359.31400 * 11 9 8 14 14 H 1.48505 * 109.46874 * 91.49916 * 13 11 9 15 15 H 1.48499 * 109.47340 * 211.49788 * 13 11 9 16 16 H 1.48496 * 109.47286 * 331.50299 * 13 11 9 17 17 C 1.52997 * 117.49895 * 246.00659 * 8 7 6 18 18 C 1.52997 * 60.00080 * 252.50896 * 17 8 7 19 19 C 1.54258 * 110.32358 * 154.40070 * 5 3 2 20 20 C 1.54372 * 105.06090 * 118.89614 * 19 5 3 21 21 N 1.48567 * 104.59575 * 23.85209 * 20 19 5 22 22 C 1.48557 * 104.21705 * 320.51718 * 21 20 19 23 23 H 1.08998 * 109.46847 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46757 * 299.99253 * 1 2 3 25 25 H 1.08998 * 109.47107 * 59.99543 * 1 2 3 26 26 H 1.09002 * 109.46845 * 305.68820 * 7 6 5 27 27 H 1.08998 * 109.47042 * 65.68759 * 7 6 5 28 28 H 0.97000 * 120.00046 * 180.02562 * 12 11 9 29 29 H 1.08997 * 117.50154 * 359.97438 * 17 8 7 30 30 H 1.08999 * 117.50200 * 145.02022 * 17 8 7 31 31 H 1.09005 * 117.49917 * 252.50930 * 18 17 8 32 32 H 1.09002 * 117.50113 * 107.48729 * 18 17 8 33 33 H 1.09001 * 110.32378 * 237.79486 * 19 5 3 34 34 H 1.08998 * 110.32059 * 359.89671 * 19 5 3 35 35 H 1.08997 * 110.41411 * 142.63355 * 20 19 5 36 36 H 1.09007 * 110.41402 * 265.07386 * 20 19 5 37 37 H 1.00895 * 110.99604 * 200.95976 * 21 20 19 38 38 H 1.09004 * 110.41398 * 280.69567 * 22 21 20 39 39 H 1.09004 * 110.40649 * 158.26387 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 8 4.1202 0.1693 -0.7167 7 6 3.8863 -1.0985 -0.1001 8 6 4.6381 -2.1864 -0.8696 9 6 5.9302 -1.7526 -1.5128 10 1 5.9338 -1.4020 -2.5343 11 6 7.1075 -1.8033 -0.7972 12 7 8.2371 -1.4373 -1.3627 13 14 7.0983 -2.3916 0.9758 14 1 7.3399 -3.8564 1.0125 15 1 8.1678 -1.6944 1.7342 16 1 5.7800 -2.0918 1.5899 17 6 3.8034 -3.2398 -1.6006 18 6 4.5639 -3.6150 -0.3271 19 6 4.0329 2.6058 -0.6255 20 6 4.8116 3.3248 0.4969 21 7 5.2584 2.2337 1.4008 22 6 4.1024 1.3017 1.4468 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 4.2401 -1.0720 0.9305 27 1 2.8185 -1.3170 -0.1122 28 1 9.0654 -1.4733 -0.8593 29 1 2.7186 -3.1581 -1.5329 30 1 4.1885 -3.6193 -2.5470 31 1 5.4494 -4.2414 -0.4358 32 1 3.9794 -3.7799 0.5781 33 1 4.6858 2.4158 -1.4775 34 1 3.1734 3.2012 -0.9335 35 1 5.6713 3.8532 0.0849 36 1 4.1589 4.0165 1.0296 37 1 5.4721 2.5905 2.3200 38 1 3.3387 1.6766 2.1283 39 1 4.4283 0.3067 1.7501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724712292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:53 Heat of formation + Delta-G solvation = -101.030280 kcal Electronic energy + Delta-G solvation = -22367.368372 eV Core-core repulsion = 19083.139117 eV Total energy + Delta-G solvation = -3284.229254 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.16244 -39.90343 -38.77309 -37.63651 -36.63384 -34.10059 -31.39183 -30.13963 -28.56553 -28.14892 -26.97315 -24.17618 -23.26782 -22.83775 -21.11950 -20.81979 -19.42758 -18.49913 -18.14718 -17.76616 -17.35761 -16.89763 -16.08197 -15.94484 -15.51390 -15.28168 -14.91001 -14.68834 -14.55556 -14.20970 -14.13992 -13.56782 -13.23524 -13.10886 -13.02411 -12.75185 -12.65662 -12.54592 -12.19383 -12.05713 -11.87339 -11.81644 -11.68267 -11.34056 -10.93647 -10.61329 -10.51874 -9.98627 -9.62227 -8.16094 -6.19496 0.85445 1.39049 1.42336 1.53013 1.55191 2.46498 2.64968 3.12610 3.21142 3.26509 3.28375 3.51385 3.71722 4.08844 4.10953 4.25442 4.25821 4.30540 4.31357 4.34255 4.48367 4.58932 4.66136 4.72056 4.74330 4.83979 4.88778 4.92956 5.02522 5.11204 5.20533 5.30793 5.52427 5.55854 5.81011 6.25428 6.34221 6.45373 6.56748 6.86228 7.47202 9.00974 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.008821 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.012140 B = 3173.306098 C = 4106.203784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.352 6.352 3 C 0.455 3.545 4 O -0.519 6.519 5 C 0.109 3.891 6 O -0.343 6.343 7 C 0.087 3.913 8 C -0.033 4.033 9 C -0.460 4.460 10 H 0.022 0.978 11 C 0.021 3.979 12 N -0.954 5.954 13 Si 0.941 3.059 14 H -0.273 1.273 15 H -0.303 1.303 16 H -0.232 1.232 17 C -0.164 4.164 18 C -0.187 4.187 19 C -0.108 4.108 20 C 0.046 3.954 21 N -0.671 5.671 22 C 0.021 3.979 23 H 0.131 0.869 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.261 0.739 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.355 0.645 38 H 0.071 0.929 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 4.650 8.811 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.268 6.268 3 C 0.298 3.702 4 O -0.408 6.408 5 C 0.067 3.933 6 O -0.261 6.261 7 C 0.012 3.988 8 C -0.034 4.034 9 C -0.498 4.498 10 H 0.040 0.960 11 C -0.175 4.175 12 N -0.595 5.595 13 Si 0.767 3.233 14 H -0.198 1.198 15 H -0.230 1.230 16 H -0.155 1.155 17 C -0.201 4.201 18 C -0.224 4.224 19 C -0.146 4.146 20 C -0.083 4.083 21 N -0.303 5.303 22 C -0.109 4.109 23 H 0.149 0.851 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.173 0.827 38 H 0.089 0.911 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.508 4.589 8.183 17.277 hybrid contribution -0.254 0.304 0.961 1.039 sum -14.763 4.893 9.144 18.041 Atomic orbital electron populations 1.23663 0.75137 1.05933 1.02717 1.86770 1.25132 1.31871 1.82990 1.24784 0.92210 0.81928 0.71259 1.90591 1.66962 1.36784 1.46467 1.22378 0.84092 0.91656 0.95217 1.88322 1.75932 1.14013 1.47844 1.22671 0.98547 0.82527 0.95077 1.19313 0.96236 0.87248 1.00564 1.20177 0.90154 1.41477 0.97983 0.95995 1.25737 0.94676 0.94943 1.02152 1.70053 0.99372 1.51010 1.39069 0.85885 0.78897 0.77955 0.80557 1.19830 1.23030 1.15492 1.22956 0.97745 1.04089 0.95261 1.23032 1.02432 0.98711 0.98263 1.22427 1.01383 0.90976 0.99836 1.22957 0.99198 0.92993 0.93147 1.63638 1.35282 1.15138 1.16219 1.23438 0.93638 1.00194 0.93603 0.85053 0.91211 0.91981 0.93618 0.89987 0.93052 0.87398 0.90674 0.90659 0.87428 0.90260 0.88185 0.88502 0.91283 0.82694 0.91103 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -10.03 7.26 -46.57 -0.34 -10.36 16 3 C 0.46 14.50 6.74 71.24 0.48 14.98 16 4 O -0.52 -16.96 15.37 21.96 0.34 -16.62 16 5 C 0.11 3.80 1.08 -10.65 -0.01 3.79 16 6 O -0.34 -15.04 9.15 -135.85 -1.24 -16.28 16 7 C 0.09 3.53 5.19 71.98 0.37 3.90 16 8 C -0.03 -1.51 1.28 -52.93 -0.07 -1.57 16 9 C -0.46 -26.94 8.66 25.60 0.22 -26.72 16 10 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16 11 C 0.02 1.25 5.47 84.65 0.46 1.72 16 12 N -0.95 -61.72 13.96 21.45 0.30 -61.42 16 13 Si 0.94 45.48 25.12 68.60 1.72 47.20 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 15 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 16 H -0.23 -9.92 5.32 99.48 0.53 -9.39 16 17 C -0.16 -6.33 9.88 30.59 0.30 -6.03 16 18 C -0.19 -7.37 7.54 30.59 0.23 -7.14 16 19 C -0.11 -3.46 6.33 31.49 0.20 -3.26 16 20 C 0.05 1.21 7.47 86.45 0.65 1.86 16 21 N -0.67 -20.19 7.62 -500.85 -3.82 -24.01 16 22 C 0.02 0.64 6.52 86.45 0.56 1.21 16 23 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 25 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 26 H 0.05 1.82 4.11 -2.39 -0.01 1.81 16 27 H 0.08 2.89 4.99 -2.39 -0.01 2.88 16 28 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 29 H 0.11 3.41 8.04 -2.39 -0.02 3.40 16 30 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.07 3.18 7.15 -2.38 -0.02 3.17 16 32 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.08 2.88 7.98 -2.39 -0.02 2.86 16 34 H 0.10 2.92 6.79 -2.39 -0.02 2.90 16 35 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.36 8.25 8.92 -89.70 -0.80 7.45 16 38 H 0.07 1.78 7.85 -2.39 -0.02 1.76 16 39 H 0.09 3.06 5.56 -2.38 -0.01 3.05 16 Total: -1.00 -74.04 309.48 1.64 -72.39 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.09 Total: 24.82 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 4.60 Total: -15.72 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -3.52 Total: -85.42 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.24 Total: -43.27 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.72 Total: 47.20 kcal Total: -74.04 1.64 -72.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724712292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.639 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds