Wall clock time and date at job start Mon Mar 30 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.40802 * 120.00692 * 275.00282 * 12 2 1 14 14 C 1.40226 * 126.05957 * 359.68757 * 13 12 2 15 15 N 1.30869 * 108.35944 * 179.87676 * 14 13 12 16 16 N 1.40082 * 108.35898 * 0.38351 * 15 14 13 17 17 C 1.46494 * 126.06763 * 179.73558 * 16 15 14 18 18 C 1.53008 * 109.47181 * 305.02248 * 17 16 15 19 19 O 1.42897 * 109.47046 * 180.02562 * 18 17 16 20 20 C 1.42908 * 113.99891 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.46778 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.46961 * 65.00178 * 21 20 19 23 23 C 1.35700 * 126.07173 * 179.97438 * 13 12 2 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 29 29 H 1.07997 * 125.81689 * 0.02562 * 14 13 12 30 30 H 1.09002 * 109.47201 * 65.02031 * 17 16 15 31 31 H 1.09003 * 109.47251 * 185.02277 * 17 16 15 32 32 H 1.09002 * 109.46876 * 299.99982 * 18 17 16 33 33 H 1.09003 * 109.47005 * 59.99877 * 18 17 16 34 34 H 1.08992 * 109.46674 * 299.99738 * 20 19 18 35 35 H 1.09001 * 109.46797 * 60.00195 * 20 19 18 36 36 H 1.09004 * 109.46162 * 184.99771 * 21 20 19 37 37 H 1.09000 * 109.47335 * 304.99560 * 21 20 19 38 38 H 0.96701 * 113.99828 * 179.97438 * 22 21 20 39 39 H 1.07999 * 126.22584 * 359.94477 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1528 0.0118 2.4091 14 6 1.8636 1.3686 2.6137 15 7 2.1093 1.6582 3.8661 16 7 2.5723 0.5002 4.5040 17 6 2.9669 0.3894 5.9105 18 6 4.0378 1.4364 6.2237 19 8 4.4231 1.3280 7.5955 20 6 5.4249 2.2660 7.9937 21 6 5.7575 2.0598 9.4729 22 8 6.3519 0.7728 9.6524 23 6 2.5904 -0.5027 3.5861 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 2.2490 -1.6317 1.1527 29 1 1.4979 2.0566 1.8659 30 1 2.0975 0.5576 6.5461 31 1 3.3670 -0.6070 6.0982 32 1 4.9072 1.2682 5.5881 33 1 3.6377 2.4328 6.0359 34 1 6.3228 2.1149 7.3946 35 1 5.0538 3.2798 7.8430 36 1 6.4552 2.8310 9.7992 37 1 4.8434 2.1234 10.0631 38 1 6.5896 0.5737 10.5684 39 1 2.8971 -1.5232 3.7618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757135900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:28 Heat of formation + Delta-G solvation = -12.998871 kcal Electronic energy + Delta-G solvation = -19777.681722 eV Core-core repulsion = 16529.562547 eV Total energy + Delta-G solvation = -3248.119175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46103 -38.51981 -36.76679 -35.59506 -33.41995 -32.22517 -30.23778 -29.63813 -28.16889 -26.23540 -25.10754 -23.28723 -22.81063 -21.05245 -20.43542 -19.14931 -18.04011 -17.24082 -16.74240 -16.15564 -16.10734 -15.34873 -14.81975 -14.77834 -14.32586 -14.12484 -13.76316 -13.44837 -13.26406 -12.93997 -12.41567 -12.04985 -11.79919 -11.75725 -11.54275 -11.38131 -11.05542 -10.99074 -10.62838 -10.44942 -10.28731 -10.15035 -10.10140 -9.83254 -9.22584 -8.90402 -8.81781 -8.42387 -6.16511 -6.05338 -4.14606 2.36494 2.71867 3.26579 3.34604 3.38146 3.60371 3.69281 3.87248 4.34628 4.62219 4.70827 4.80593 4.89209 4.91792 5.13759 5.20099 5.22876 5.24947 5.38154 5.45104 5.51642 5.67211 5.78969 6.23293 6.38413 6.82438 6.87646 7.02292 7.08946 7.22331 7.25657 7.49358 7.61288 7.77339 7.96667 8.18131 8.24273 8.58313 8.89966 9.14324 9.52974 10.98107 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042173 B = 0.002774 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.776710 B =10091.706202 C =10309.242477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.280 3.720 3 H 0.031 0.969 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.731 5.731 13 C 0.100 3.900 14 C 0.016 3.984 15 N -0.287 5.287 16 N -0.383 5.383 17 C 0.156 3.844 18 C 0.051 3.949 19 O -0.382 6.382 20 C 0.063 3.937 21 C 0.078 3.922 22 O -0.566 6.566 23 C -0.071 4.071 24 H 0.026 0.974 25 H 0.086 0.914 26 H 0.010 0.990 27 H 0.262 0.738 28 H 0.386 0.614 29 H 0.180 0.820 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.378 0.622 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 1.814 20.786 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.177 3.823 3 H 0.049 0.951 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.363 5.363 13 C -0.011 4.011 14 C -0.174 4.174 15 N -0.110 5.110 16 N -0.175 5.175 17 C 0.033 3.967 18 C -0.026 4.026 19 O -0.300 6.300 20 C -0.014 4.014 21 C 0.000 4.000 22 O -0.372 6.372 23 C -0.217 4.217 24 H 0.045 0.955 25 H 0.105 0.895 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.219 0.781 29 H 0.197 0.803 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.225 0.775 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.756 2.791 20.966 22.204 hybrid contribution 0.563 -1.158 -1.134 1.716 sum 7.320 1.633 19.832 21.202 Atomic orbital electron populations 1.22204 0.99480 0.99266 1.00141 1.18481 0.90121 0.92908 0.80759 0.95100 1.21290 1.31543 1.12980 0.90380 0.92203 1.24878 0.94955 0.95049 0.98992 1.69890 1.36410 1.22762 1.23594 0.86433 0.78570 0.79591 0.82735 1.19811 1.20978 1.20974 1.44713 1.74457 1.11229 1.05925 1.17994 1.02891 0.92076 0.88164 1.23628 1.04387 0.95464 0.93887 1.77026 1.19274 1.07315 1.07380 1.47693 1.54754 1.07021 1.08023 1.21034 0.97574 0.99936 0.78118 1.22729 0.97492 0.99857 0.82543 1.87828 1.58012 1.57931 1.26267 1.22539 0.91543 0.92521 0.94751 1.22202 0.96901 0.85415 0.95449 1.86579 1.82930 1.35034 1.32616 1.21437 1.15889 0.95044 0.89362 0.95471 0.89538 0.97115 0.92796 0.78083 0.80294 0.89917 0.88435 0.92753 0.91822 0.92452 0.91654 0.92104 0.92660 0.77498 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.28 37.16 0.34 -3.34 16 2 C 0.28 6.93 2.57 -69.09 -0.18 6.75 16 3 H 0.03 0.83 7.15 -51.93 -0.37 0.46 16 4 C -0.52 -13.97 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.84 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.73 -15.62 5.31 -53.45 -0.28 -15.90 16 13 C 0.10 1.97 6.94 -83.89 -0.58 1.39 16 14 C 0.02 0.31 11.15 -17.22 -0.19 0.12 16 15 N -0.29 -5.32 12.41 30.70 0.38 -4.94 16 16 N -0.38 -6.23 3.71 -61.00 -0.23 -6.46 16 17 C 0.16 1.96 6.89 -4.04 -0.03 1.93 16 18 C 0.05 0.62 6.13 37.16 0.23 0.85 16 19 O -0.38 -4.53 10.31 -40.09 -0.41 -4.94 16 20 C 0.06 0.58 6.32 37.16 0.23 0.81 16 21 C 0.08 0.56 7.43 37.16 0.28 0.84 16 22 O -0.57 -4.94 13.62 -40.09 -0.55 -5.49 16 23 C -0.07 -1.21 11.52 -16.63 -0.19 -1.40 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.39 7.75 8.67 -40.82 -0.35 7.40 16 29 H 0.18 3.49 7.44 -52.49 -0.39 3.10 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 1.40 9.12 45.56 0.42 1.81 16 39 H 0.16 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -31.55 333.72 -6.14 -37.69 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.20 Total: 7.95 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -0.48 Total: -4.71 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.50 Total: -51.38 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.96 Total: -10.43 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.55 -6.14 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757135900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.693 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds