Wall clock time and date at job start Mon Mar 30 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.40802 * 120.00692 * 275.00282 * 12 2 1 14 14 C 1.40226 * 126.05957 * 359.68757 * 13 12 2 15 15 N 1.30869 * 108.35944 * 179.87676 * 14 13 12 16 16 N 1.40082 * 108.35898 * 0.38351 * 15 14 13 17 17 C 1.46494 * 126.06763 * 179.73558 * 16 15 14 18 18 C 1.53008 * 109.47181 * 305.02248 * 17 16 15 19 19 O 1.42897 * 109.47046 * 180.02562 * 18 17 16 20 20 C 1.42908 * 113.99891 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.46778 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.46961 * 65.00178 * 21 20 19 23 23 C 1.35700 * 126.07173 * 179.97438 * 13 12 2 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 29 29 H 1.07997 * 125.81689 * 0.02562 * 14 13 12 30 30 H 1.09002 * 109.47201 * 65.02031 * 17 16 15 31 31 H 1.09003 * 109.47251 * 185.02277 * 17 16 15 32 32 H 1.09002 * 109.46876 * 299.99982 * 18 17 16 33 33 H 1.09003 * 109.47005 * 59.99877 * 18 17 16 34 34 H 1.08992 * 109.46674 * 299.99738 * 20 19 18 35 35 H 1.09001 * 109.46797 * 60.00195 * 20 19 18 36 36 H 1.09004 * 109.46162 * 184.99771 * 21 20 19 37 37 H 1.09000 * 109.47335 * 304.99560 * 21 20 19 38 38 H 0.96701 * 113.99828 * 179.97438 * 22 21 20 39 39 H 1.07999 * 126.22584 * 359.94477 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1528 0.0118 2.4091 14 6 1.8636 1.3686 2.6137 15 7 2.1093 1.6582 3.8661 16 7 2.5723 0.5002 4.5040 17 6 2.9669 0.3894 5.9105 18 6 4.0378 1.4364 6.2237 19 8 4.4231 1.3280 7.5955 20 6 5.4249 2.2660 7.9937 21 6 5.7575 2.0598 9.4729 22 8 6.3519 0.7728 9.6524 23 6 2.5904 -0.5027 3.5861 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 2.2490 -1.6317 1.1527 29 1 1.4979 2.0566 1.8659 30 1 2.0975 0.5576 6.5461 31 1 3.3670 -0.6070 6.0982 32 1 4.9072 1.2682 5.5881 33 1 3.6377 2.4328 6.0359 34 1 6.3228 2.1149 7.3946 35 1 5.0538 3.2798 7.8430 36 1 6.4552 2.8310 9.7992 37 1 4.8434 2.1234 10.0631 38 1 6.5896 0.5737 10.5684 39 1 2.8971 -1.5232 3.7618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757135900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:27 Heat of formation + Delta-G solvation = -36.961199 kcal Electronic energy + Delta-G solvation = -19778.720806 eV Core-core repulsion = 16529.562547 eV Total energy + Delta-G solvation = -3249.158259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.87606 -39.33026 -37.52341 -37.24372 -34.86867 -33.88015 -31.46032 -30.97993 -29.40282 -27.77202 -27.09319 -24.43951 -23.45178 -22.81817 -21.81358 -20.69211 -18.64749 -18.60671 -18.23856 -17.42134 -17.06752 -16.76637 -16.27964 -16.02386 -15.44804 -15.24470 -15.09616 -14.95645 -14.25849 -14.18060 -13.97512 -13.66824 -13.40380 -13.01828 -12.85074 -12.68954 -12.56456 -12.41729 -12.19189 -12.07659 -11.99947 -11.59914 -11.02414 -10.97767 -10.78725 -10.69796 -10.43305 -10.18961 -8.13356 -7.69741 -6.25647 0.97799 1.44192 1.45907 1.52548 1.57469 2.17062 2.42872 2.70028 3.14744 3.21972 3.39415 3.76455 3.91324 4.13570 4.15071 4.21495 4.24802 4.28631 4.50909 4.58296 4.61042 4.70670 4.82622 4.84539 4.86345 4.96191 5.09552 5.23678 5.45914 5.59979 5.75902 5.96826 6.03840 6.19903 6.28825 6.64818 6.80392 6.92512 7.03356 7.42968 7.54838 8.93850 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042173 B = 0.002774 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.776710 B =10091.706202 C =10309.242477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.290 3.710 3 H 0.000 1.000 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.734 5.734 13 C 0.064 3.936 14 C -0.006 4.006 15 N -0.299 5.299 16 N -0.372 5.372 17 C 0.149 3.851 18 C 0.061 3.939 19 O -0.393 6.393 20 C 0.051 3.949 21 C 0.078 3.922 22 O -0.594 6.594 23 C -0.042 4.042 24 H 0.026 0.974 25 H 0.063 0.937 26 H 0.019 0.981 27 H 0.264 0.736 28 H 0.393 0.607 29 H 0.168 0.832 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.398 0.602 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.049 0.700 22.361 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.185 3.815 3 H 0.018 0.982 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.369 5.369 13 C -0.045 4.045 14 C -0.193 4.193 15 N -0.123 5.123 16 N -0.163 5.163 17 C 0.028 3.972 18 C -0.017 4.017 19 O -0.312 6.312 20 C -0.026 4.026 21 C 0.001 3.999 22 O -0.403 6.403 23 C -0.189 4.189 24 H 0.046 0.954 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.226 0.774 29 H 0.185 0.815 30 H 0.112 0.888 31 H 0.141 0.859 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.248 0.752 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 7.767 1.688 22.614 23.970 hybrid contribution 0.318 -0.789 -1.415 1.651 sum 8.085 0.899 21.199 22.706 Atomic orbital electron populations 1.22016 0.99423 0.98879 0.99367 1.18113 0.90066 0.91458 0.81824 0.98186 1.21606 1.31631 1.13131 0.91414 0.92113 1.25680 0.95139 0.95734 1.01893 1.70016 1.37280 1.23934 1.24259 0.85420 0.78044 0.78547 0.79040 1.19087 1.20572 1.20831 1.44306 1.75591 1.11349 1.05639 1.18178 1.05480 0.92275 0.88606 1.23551 1.05633 0.95778 0.94360 1.77001 1.19943 1.08370 1.06960 1.48090 1.52824 1.06193 1.09204 1.21381 0.98346 1.01542 0.75951 1.22521 0.96962 0.99207 0.83024 1.87809 1.58808 1.58970 1.25622 1.22847 0.90740 0.92865 0.96106 1.22299 0.97891 0.85711 0.94034 1.86514 1.83169 1.35890 1.34732 1.21964 1.12465 0.96286 0.88174 0.95448 0.91852 0.96226 0.92716 0.77359 0.81500 0.88752 0.85896 0.93448 0.92663 0.93021 0.90121 0.89309 0.92066 0.75238 0.78521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.81 9.28 71.98 0.67 -6.14 16 2 C 0.29 14.64 2.57 44.24 0.11 14.76 16 3 H 0.00 0.02 7.15 -2.39 -0.02 0.00 16 4 C -0.54 -29.02 8.73 25.60 0.22 -28.79 16 5 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 6 C 0.02 0.82 5.30 84.66 0.45 1.26 16 7 N -0.92 -51.85 11.32 21.45 0.24 -51.61 16 8 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 N -0.73 -31.33 5.31 -323.03 -1.71 -33.05 16 13 C 0.06 2.49 6.94 37.59 0.26 2.75 16 14 C -0.01 -0.22 11.15 85.32 0.95 0.73 16 15 N -0.30 -10.92 12.41 -56.77 -0.70 -11.63 16 16 N -0.37 -11.35 3.71 -346.90 -1.29 -12.64 16 17 C 0.15 3.34 6.89 86.38 0.60 3.93 16 18 C 0.06 1.37 6.13 71.98 0.44 1.81 16 19 O -0.39 -8.61 10.31 -144.34 -1.49 -10.10 16 20 C 0.05 0.84 6.32 71.98 0.45 1.29 16 21 C 0.08 0.94 7.43 71.98 0.53 1.48 16 22 O -0.59 -9.23 13.62 -144.34 -1.97 -11.20 16 23 C -0.04 -1.31 11.52 83.46 0.96 -0.35 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 26 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.39 15.46 8.67 -92.70 -0.80 14.65 16 29 H 0.17 6.91 7.44 -2.91 -0.02 6.88 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.12 2.19 8.08 -2.39 -0.02 2.17 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.40 2.17 9.12 -74.06 -0.68 1.49 16 39 H 0.20 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -67.47 333.72 0.34 -67.13 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.42 Total: 25.54 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.65 Total: -7.26 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -3.46 Total: -108.92 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -3.45 Total: -21.29 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -67.47 0.34 -67.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757135900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.167 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds