Wall clock time and date at job start Mon Mar 30 2020 04:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47054 * 2 1 4 4 C 1.37101 * 119.99747 * 262.87693 * 3 2 1 5 5 H 1.08005 * 120.00203 * 196.11372 * 4 3 2 6 6 C 1.38950 * 120.00014 * 16.11780 * 4 3 2 7 7 N 1.31404 * 120.00183 * 15.98979 * 6 4 3 8 8 Si 1.86805 * 119.99914 * 195.99297 * 6 4 3 9 9 H 1.48500 * 109.47040 * 89.99721 * 8 6 4 10 10 H 1.48498 * 109.46873 * 209.99607 * 8 6 4 11 11 H 1.48497 * 109.47412 * 329.99910 * 8 6 4 12 12 C 1.34768 * 120.00410 * 82.87967 * 3 2 1 13 13 O 1.21300 * 120.00061 * 182.64034 * 12 3 2 14 14 C 1.50698 * 120.00231 * 2.63543 * 12 3 2 15 15 H 1.09004 * 110.03472 * 335.47612 * 14 12 3 16 16 C 1.54362 * 110.06158 * 213.96941 * 14 12 3 17 17 C 1.54921 * 104.20209 * 217.18744 * 16 14 12 18 18 C 1.54964 * 102.78711 * 37.75549 * 17 16 14 19 19 C 1.53533 * 110.05886 * 96.92470 * 14 12 3 20 20 O 1.43353 * 110.17813 * 359.89230 * 19 14 12 21 21 C 1.44882 * 104.69667 * 214.56420 * 20 19 14 22 22 C 1.54940 * 101.77493 * 35.72218 * 21 20 19 23 23 O 1.42976 * 110.37750 * 239.12653 * 19 14 12 24 24 H 1.08996 * 109.46933 * 60.00114 * 1 2 3 25 25 H 1.09005 * 109.46966 * 300.00011 * 1 2 3 26 26 H 1.09007 * 109.47182 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46933 * 119.99886 * 2 1 3 28 28 H 1.08997 * 109.47029 * 239.99334 * 2 1 3 29 29 H 0.97005 * 120.00269 * 180.02562 * 7 6 4 30 30 H 1.09005 * 110.48104 * 335.86829 * 16 14 12 31 31 H 1.08997 * 110.48477 * 98.50942 * 16 14 12 32 32 H 1.08993 * 110.75298 * 279.42659 * 17 16 14 33 33 H 1.09001 * 110.90237 * 156.14872 * 17 16 14 34 34 H 1.09004 * 110.50358 * 203.67687 * 18 17 16 35 35 H 1.09003 * 110.62192 * 81.04659 * 18 17 16 36 36 H 1.08994 * 110.96748 * 277.59798 * 21 20 19 37 37 H 1.09002 * 110.99935 * 153.85526 * 21 20 19 38 38 H 1.09001 * 110.68786 * 206.26321 * 22 21 20 39 39 H 1.09002 * 110.84132 * 83.14415 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3856 1.9783 -1.1782 5 1 2.9801 2.8800 -1.1643 6 6 1.9931 1.4236 -2.3902 7 7 1.0289 0.5314 -2.4228 8 14 2.8361 1.9462 -3.9732 9 1 4.0009 1.0613 -4.2291 10 1 1.8773 1.8415 -5.1024 11 1 3.3002 3.3510 -3.8465 12 6 2.1066 2.0647 1.1581 13 8 2.4653 3.2235 1.1526 14 6 1.7596 1.3897 2.4599 15 1 1.0752 0.5605 2.2798 16 6 1.1184 2.4059 3.4289 17 6 1.6701 2.0049 4.8199 18 6 3.1311 1.5959 4.5046 19 6 3.0354 0.8799 3.1453 20 8 4.1842 1.1921 2.3466 21 6 5.0863 0.0765 2.5483 22 6 4.0990 -1.1127 2.6574 23 8 2.9655 -0.5350 3.3384 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 0.7551 0.1439 -3.2689 30 1 1.4248 3.4207 3.1750 31 1 0.0321 2.3182 3.4097 32 1 1.1126 1.1620 5.2282 33 1 1.6456 2.8511 5.5066 34 1 3.5106 0.9166 5.2679 35 1 3.7684 2.4769 4.4280 36 1 5.6554 0.1968 3.4700 37 1 5.7523 -0.0466 1.6942 38 1 4.5325 -1.9201 3.2475 39 1 3.8128 -1.4710 1.6685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773846604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:29 Heat of formation + Delta-G solvation = -109.182900 kcal Electronic energy + Delta-G solvation = -22945.353568 eV Core-core repulsion = 19660.770789 eV Total energy + Delta-G solvation = -3284.582779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68970 -38.30216 -35.98178 -34.84691 -34.56061 -31.70554 -29.64085 -29.42150 -28.69736 -26.29401 -24.62657 -23.05723 -22.14779 -20.92609 -20.57307 -18.46753 -17.02425 -16.64592 -16.34329 -15.92353 -15.52241 -14.96204 -14.40753 -14.01229 -13.69584 -13.66724 -13.31903 -12.65917 -12.65231 -12.54486 -12.34102 -12.05834 -11.70227 -11.36015 -11.27094 -11.03030 -11.00598 -10.84741 -10.80560 -10.65747 -10.27360 -10.21721 -10.01766 -9.89081 -9.73645 -9.26284 -8.82294 -8.19679 -7.55554 -6.18563 -3.72122 3.20217 3.29487 3.35379 3.61788 3.99375 4.19862 4.27830 4.74809 4.84223 4.87443 5.00016 5.09614 5.21938 5.32354 5.34078 5.60147 5.71017 5.78442 5.83567 5.89890 5.92814 6.04374 6.10320 6.16217 6.23320 6.27407 6.38368 6.45639 6.66010 6.76964 6.78501 6.87952 7.36901 7.46748 7.57458 7.88844 8.23348 8.65781 9.31810 9.57982 10.15622 10.79377 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.007363 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.503165 B = 3801.763757 C = 3985.378091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.128 3.872 3 N -0.442 5.442 4 C -0.291 4.291 5 H 0.099 0.901 6 C 0.023 3.977 7 N -0.879 5.879 8 Si 0.923 3.077 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.474 3.526 13 O -0.585 6.585 14 C -0.117 4.117 15 H 0.101 0.899 16 C -0.109 4.109 17 C -0.118 4.118 18 C -0.141 4.141 19 C 0.268 3.732 20 O -0.344 6.344 21 C 0.012 3.988 22 C 0.019 3.981 23 O -0.375 6.375 24 H 0.099 0.901 25 H 0.020 0.980 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.096 0.904 29 H 0.264 0.736 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -5.303 10.533 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.004 3.996 3 N -0.160 5.160 4 C -0.419 4.419 5 H 0.117 0.883 6 C -0.178 4.178 7 N -0.520 5.520 8 Si 0.751 3.249 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.196 1.196 12 C 0.262 3.738 13 O -0.469 6.469 14 C -0.139 4.139 15 H 0.119 0.881 16 C -0.147 4.147 17 C -0.155 4.155 18 C -0.178 4.178 19 C 0.190 3.810 20 O -0.263 6.263 21 C -0.064 4.064 22 C -0.058 4.058 23 O -0.297 6.297 24 H 0.117 0.883 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.163 -4.756 10.317 11.792 hybrid contribution 0.438 -0.222 -0.861 0.992 sum 3.601 -4.978 9.455 11.276 Atomic orbital electron populations 1.22260 0.96837 0.99658 1.02134 1.21303 0.94392 0.83907 1.00015 1.43658 1.55868 1.10961 1.05495 1.19728 1.29488 1.10549 0.82127 0.88342 1.25227 0.95934 0.97510 0.99147 1.70040 1.25707 1.29972 1.26283 0.85966 0.78825 0.79138 0.81017 1.20656 1.21139 1.19587 1.19328 0.83721 0.86503 0.84256 1.90467 1.52458 1.17418 1.86548 1.22260 0.95824 0.99875 0.95909 0.88052 1.22304 0.99464 1.00238 0.92733 1.22409 0.94955 1.00842 0.97327 1.22916 0.98642 1.00725 0.95561 1.23614 0.87073 0.80243 0.90033 1.89500 1.27346 1.41386 1.68097 1.24341 0.94182 0.85273 1.02643 1.24212 0.86057 0.96785 0.98699 1.88846 1.47082 1.19186 1.74544 0.88271 0.96144 0.94700 0.95310 0.88545 0.92574 0.89361 0.91404 0.91351 0.91182 0.90881 0.89530 0.91254 0.87671 0.88757 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.39 37.16 0.35 -2.98 16 2 C 0.13 2.98 4.90 -4.04 -0.02 2.96 16 3 N -0.44 -11.65 2.64 -114.82 -0.30 -11.95 16 4 C -0.29 -8.26 9.38 -14.93 -0.14 -8.40 16 5 H 0.10 2.97 7.35 -52.48 -0.39 2.59 16 6 C 0.02 0.60 5.03 -17.47 -0.09 0.52 16 7 N -0.88 -22.92 8.22 55.50 0.46 -22.46 16 8 Si 0.92 21.01 29.58 -169.99 -5.03 15.98 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.47 12.15 5.28 -10.99 -0.06 12.09 16 13 O -0.58 -16.91 15.45 4.56 0.07 -16.84 16 14 C -0.12 -2.40 2.24 -90.78 -0.20 -2.61 16 15 H 0.10 2.07 4.94 -51.93 -0.26 1.81 16 16 C -0.11 -1.95 6.33 -25.00 -0.16 -2.11 16 17 C -0.12 -1.68 6.91 -24.68 -0.17 -1.85 16 18 C -0.14 -2.17 6.28 -25.21 -0.16 -2.33 16 19 C 0.27 4.93 1.34 -25.97 -0.03 4.90 16 20 O -0.34 -6.93 9.45 -61.12 -0.58 -7.51 16 21 C 0.01 0.18 7.94 38.18 0.30 0.48 16 22 C 0.02 0.26 8.04 38.18 0.31 0.57 16 23 O -0.38 -6.34 10.57 -59.03 -0.62 -6.96 16 24 H 0.10 2.47 6.05 -51.93 -0.31 2.16 16 25 H 0.02 0.42 6.97 -51.93 -0.36 0.06 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.62 6.05 -51.93 -0.31 0.30 16 28 H 0.10 2.41 6.06 -51.93 -0.31 2.09 16 29 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.09 1.76 6.94 -51.93 -0.36 1.40 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 35 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.15 7.70 -51.93 -0.40 0.75 16 LS Contribution 303.82 15.07 4.58 4.58 Total: -1.00 -31.86 303.82 -7.14 -39.00 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.64 Total: 4.93 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.07 Total: 1.24 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.15 Total: -34.41 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.13 Total: -31.32 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.86 -7.14 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773846604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.186 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds