Wall clock time and date at job start Mon Mar 30 2020 04:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47054 * 2 1 4 4 C 1.37101 * 119.99747 * 262.87693 * 3 2 1 5 5 H 1.08005 * 120.00203 * 196.11372 * 4 3 2 6 6 C 1.38950 * 120.00014 * 16.11780 * 4 3 2 7 7 N 1.31404 * 120.00183 * 15.98979 * 6 4 3 8 8 Si 1.86805 * 119.99914 * 195.99297 * 6 4 3 9 9 H 1.48500 * 109.47040 * 89.99721 * 8 6 4 10 10 H 1.48498 * 109.46873 * 209.99607 * 8 6 4 11 11 H 1.48497 * 109.47412 * 329.99910 * 8 6 4 12 12 C 1.34768 * 120.00410 * 82.87967 * 3 2 1 13 13 O 1.21300 * 120.00061 * 182.64034 * 12 3 2 14 14 C 1.50698 * 120.00231 * 2.63543 * 12 3 2 15 15 H 1.09004 * 110.03472 * 335.47612 * 14 12 3 16 16 C 1.54362 * 110.06158 * 213.96941 * 14 12 3 17 17 C 1.54921 * 104.20209 * 217.18744 * 16 14 12 18 18 C 1.54964 * 102.78711 * 37.75549 * 17 16 14 19 19 C 1.53533 * 110.05886 * 96.92470 * 14 12 3 20 20 O 1.43353 * 110.17813 * 359.89230 * 19 14 12 21 21 C 1.44882 * 104.69667 * 214.56420 * 20 19 14 22 22 C 1.54940 * 101.77493 * 35.72218 * 21 20 19 23 23 O 1.42976 * 110.37750 * 239.12653 * 19 14 12 24 24 H 1.08996 * 109.46933 * 60.00114 * 1 2 3 25 25 H 1.09005 * 109.46966 * 300.00011 * 1 2 3 26 26 H 1.09007 * 109.47182 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46933 * 119.99886 * 2 1 3 28 28 H 1.08997 * 109.47029 * 239.99334 * 2 1 3 29 29 H 0.97005 * 120.00269 * 180.02562 * 7 6 4 30 30 H 1.09005 * 110.48104 * 335.86829 * 16 14 12 31 31 H 1.08997 * 110.48477 * 98.50942 * 16 14 12 32 32 H 1.08993 * 110.75298 * 279.42659 * 17 16 14 33 33 H 1.09001 * 110.90237 * 156.14872 * 17 16 14 34 34 H 1.09004 * 110.50358 * 203.67687 * 18 17 16 35 35 H 1.09003 * 110.62192 * 81.04659 * 18 17 16 36 36 H 1.08994 * 110.96748 * 277.59798 * 21 20 19 37 37 H 1.09002 * 110.99935 * 153.85526 * 21 20 19 38 38 H 1.09001 * 110.68786 * 206.26321 * 22 21 20 39 39 H 1.09002 * 110.84132 * 83.14415 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3856 1.9783 -1.1782 5 1 2.9801 2.8800 -1.1643 6 6 1.9931 1.4236 -2.3902 7 7 1.0289 0.5314 -2.4228 8 14 2.8361 1.9462 -3.9732 9 1 4.0009 1.0613 -4.2291 10 1 1.8773 1.8415 -5.1024 11 1 3.3002 3.3510 -3.8465 12 6 2.1066 2.0647 1.1581 13 8 2.4653 3.2235 1.1526 14 6 1.7596 1.3897 2.4599 15 1 1.0752 0.5605 2.2798 16 6 1.1184 2.4059 3.4289 17 6 1.6701 2.0049 4.8199 18 6 3.1311 1.5959 4.5046 19 6 3.0354 0.8799 3.1453 20 8 4.1842 1.1921 2.3466 21 6 5.0863 0.0765 2.5483 22 6 4.0990 -1.1127 2.6574 23 8 2.9655 -0.5350 3.3384 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 0.7551 0.1439 -3.2689 30 1 1.4248 3.4207 3.1750 31 1 0.0321 2.3182 3.4097 32 1 1.1126 1.1620 5.2282 33 1 1.6456 2.8511 5.5066 34 1 3.5106 0.9166 5.2679 35 1 3.7684 2.4769 4.4280 36 1 5.6554 0.1968 3.4700 37 1 5.7523 -0.0466 1.6942 38 1 4.5325 -1.9201 3.2475 39 1 3.8128 -1.4710 1.6685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773846604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:28 Heat of formation + Delta-G solvation = -130.045832 kcal Electronic energy + Delta-G solvation = -22946.258252 eV Core-core repulsion = 19660.770789 eV Total energy + Delta-G solvation = -3285.487463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07637 -40.11848 -37.51845 -36.63703 -35.98640 -33.75127 -31.30531 -30.84310 -30.21575 -27.68002 -26.55645 -24.21790 -24.02128 -22.52317 -21.85562 -20.17299 -18.82273 -18.37234 -17.74966 -17.48698 -16.98290 -16.39750 -16.18446 -15.69152 -15.30189 -15.05702 -14.89170 -14.53392 -14.30290 -13.86283 -13.76107 -13.53784 -13.35643 -13.03191 -12.91334 -12.82574 -12.50963 -12.33944 -12.24082 -12.09403 -12.04329 -11.95772 -11.73163 -11.54813 -11.05680 -10.84536 -10.62909 -10.18665 -9.59663 -8.23401 -5.85949 1.36450 1.40605 1.52316 2.02164 2.27801 2.50247 2.94236 3.10236 3.17237 3.48067 3.61709 3.72335 3.99744 4.02063 4.17427 4.27571 4.39105 4.42440 4.51306 4.51822 4.60052 4.69427 4.77725 4.83618 4.89944 4.92671 4.95422 4.99941 5.09385 5.13155 5.15785 5.41171 5.43724 5.47702 5.94248 6.11450 6.21951 6.61192 7.24892 7.56491 8.14859 8.71951 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.007363 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.503165 B = 3801.763757 C = 3985.378091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.135 3.865 3 N -0.453 5.453 4 C -0.336 4.336 5 H 0.064 0.936 6 C -0.002 4.002 7 N -0.880 5.880 8 Si 0.985 3.015 9 H -0.268 1.268 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.466 3.534 13 O -0.632 6.632 14 C -0.118 4.118 15 H 0.102 0.898 16 C -0.113 4.113 17 C -0.105 4.105 18 C -0.136 4.136 19 C 0.266 3.734 20 O -0.390 6.390 21 C 0.006 3.994 22 C 0.017 3.983 23 O -0.380 6.380 24 H 0.070 0.930 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.271 0.729 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 -7.186 11.805 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 N -0.171 5.171 4 C -0.464 4.464 5 H 0.082 0.918 6 C -0.204 4.204 7 N -0.519 5.519 8 Si 0.809 3.191 9 H -0.194 1.194 10 H -0.197 1.197 11 H -0.208 1.208 12 C 0.255 3.745 13 O -0.520 6.520 14 C -0.140 4.140 15 H 0.120 0.880 16 C -0.151 4.151 17 C -0.142 4.142 18 C -0.174 4.174 19 C 0.188 3.812 20 O -0.311 6.311 21 C -0.070 4.070 22 C -0.059 4.059 23 O -0.301 6.301 24 H 0.088 0.912 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.156 0.844 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.183 -6.692 11.591 13.757 hybrid contribution 0.427 0.323 -1.324 1.429 sum 3.611 -6.369 10.267 12.610 Atomic orbital electron populations 1.22105 0.95717 1.01105 1.00968 1.21284 0.95175 0.82454 0.99926 1.43874 1.55891 1.11949 1.05341 1.19556 1.31685 1.11049 0.84087 0.91774 1.25903 0.95961 0.97245 1.01261 1.70132 1.25042 1.29357 1.27369 0.85070 0.78331 0.78221 0.77470 1.19357 1.19656 1.20751 1.20184 0.82447 0.86167 0.85691 1.90416 1.54435 1.19614 1.87524 1.22311 0.97683 1.00112 0.93845 0.88031 1.22335 1.00314 0.97901 0.94536 1.22419 0.93944 1.02547 0.95280 1.22906 0.99413 1.00562 0.94473 1.23676 0.85450 0.81239 0.90835 1.89464 1.28795 1.43671 1.69158 1.24653 0.93967 0.84021 1.04370 1.24417 0.85166 0.97410 0.98864 1.88818 1.48368 1.18341 1.74573 0.91171 0.95466 0.91846 0.93445 0.90339 0.91877 0.92316 0.90001 0.89179 0.88725 0.88005 0.90620 0.88297 0.87223 0.84396 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.14 9.39 71.98 0.68 -5.46 16 2 C 0.13 6.33 4.90 86.38 0.42 6.75 16 3 N -0.45 -24.72 2.64 -635.55 -1.68 -26.40 16 4 C -0.34 -19.92 9.38 84.04 0.79 -19.13 16 5 H 0.06 4.16 7.35 -2.91 -0.02 4.13 16 6 C 0.00 -0.13 5.03 84.93 0.43 0.29 16 7 N -0.88 -45.92 8.22 21.66 0.18 -45.74 16 8 Si 0.98 43.53 29.58 68.60 2.03 45.56 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 C 0.47 24.76 5.28 87.66 0.46 25.23 16 13 O -0.63 -38.73 15.45 -2.15 -0.03 -38.76 16 14 C -0.12 -4.84 2.24 -10.90 -0.02 -4.86 16 15 H 0.10 4.07 4.94 -2.38 -0.01 4.05 16 16 C -0.11 -3.97 6.33 31.71 0.20 -3.77 16 17 C -0.10 -2.70 6.91 31.92 0.22 -2.48 16 18 C -0.14 -3.89 6.28 31.58 0.20 -3.69 16 19 C 0.27 9.48 1.34 31.09 0.04 9.52 16 20 O -0.39 -15.82 9.45 -124.23 -1.17 -16.99 16 21 C 0.01 0.16 7.94 72.65 0.58 0.73 16 22 C 0.02 0.44 8.04 72.65 0.58 1.02 16 23 O -0.38 -11.87 10.57 -126.22 -1.33 -13.21 16 24 H 0.07 3.50 6.05 -2.39 -0.01 3.49 16 25 H 0.03 1.11 6.97 -2.38 -0.02 1.10 16 26 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 27 H 0.05 2.02 6.05 -2.39 -0.01 2.01 16 28 H 0.08 3.95 6.06 -2.39 -0.01 3.93 16 29 H 0.27 13.24 8.31 -92.70 -0.77 12.47 16 30 H 0.06 2.41 6.94 -2.38 -0.02 2.40 16 31 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 2.32 8.06 -2.38 -0.02 2.30 16 35 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 36 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 1.82 7.70 -2.39 -0.02 1.80 16 Total: -1.00 -72.47 303.82 3.61 -68.86 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 1.05 Total: 22.52 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 4.58 Total: 4.15 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -1.50 Total: -72.13 kcal Atomic # 8 Polarization: -66.42 SS G_CDS: -2.54 Total: -68.96 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -72.47 3.61 -68.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773846604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.185 kcal (2) G-P(sol) polarization free energy of solvation -72.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds