Wall clock time and date at job start Mon Mar 30 2020 04:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46944 * 2 1 4 4 C 1.50692 * 109.47560 * 119.99940 * 2 1 3 5 5 H 1.07998 * 120.00550 * 119.99871 * 4 2 1 6 6 C 1.37880 * 120.00016 * 300.00462 * 4 2 1 7 7 N 1.31520 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00178 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47124 * 59.99803 * 8 6 4 10 10 H 1.48505 * 109.47198 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47102 * 300.00230 * 8 6 4 12 12 N 1.46496 * 109.47458 * 240.00438 * 2 1 3 13 13 C 1.34778 * 120.00491 * 84.99622 * 12 2 1 14 14 O 1.21279 * 119.99544 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00367 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.55331 * 26.68558 * 15 13 12 17 17 C 1.54964 * 110.50239 * 149.34208 * 15 13 12 18 18 C 1.54920 * 102.78875 * 156.31388 * 17 15 13 19 19 C 1.54363 * 104.20144 * 322.24816 * 18 17 15 20 20 C 1.53526 * 106.47111 * 23.55503 * 19 18 17 21 21 O 1.43361 * 110.15659 * 240.49757 * 20 19 18 22 22 C 1.44878 * 104.69863 * 214.57050 * 21 20 19 23 23 C 1.54944 * 101.77525 * 35.72076 * 22 21 20 24 24 O 1.42976 * 110.39163 * 119.74150 * 20 19 18 25 25 H 1.09001 * 109.46605 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47521 * 299.99660 * 1 2 3 27 27 H 1.09002 * 109.47331 * 60.00338 * 1 2 3 28 28 H 0.96999 * 119.99986 * 180.02562 * 7 6 4 29 29 H 0.97009 * 120.00049 * 264.99650 * 12 2 1 30 30 H 1.08995 * 110.75046 * 37.98481 * 17 15 13 31 31 H 1.09005 * 110.90381 * 274.71120 * 17 15 13 32 32 H 1.08997 * 110.48502 * 203.57111 * 18 17 15 33 33 H 1.08999 * 110.59806 * 80.98471 * 18 17 15 34 34 H 1.08998 * 110.05733 * 264.29881 * 19 18 17 35 35 H 1.09003 * 110.05019 * 142.80456 * 19 18 17 36 36 H 1.08992 * 110.96903 * 277.59732 * 22 21 20 37 37 H 1.08999 * 110.99536 * 153.85485 * 22 21 20 38 38 H 1.09005 * 110.68885 * 206.25957 * 23 22 21 39 39 H 1.09002 * 110.84225 * 83.13749 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1208 4.0081 10 1 1.8270 -0.4198 5.2205 11 1 1.8261 -2.5202 4.0077 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6490 -0.7286 -3.5878 16 1 2.4206 -1.7931 -3.5350 17 6 2.0321 -0.1039 -4.8647 18 6 3.0584 -0.4821 -5.9618 19 6 4.4275 -0.3515 -5.2607 20 6 4.1632 -0.5097 -3.7567 21 8 4.5665 0.6748 -3.0570 22 6 5.0674 0.1973 -1.7842 23 6 5.7421 -1.1371 -2.1904 24 8 4.8835 -1.6313 -3.2396 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.7094 1.1618 3.4844 29 1 2.2492 -1.6317 -1.1527 30 1 1.9538 0.9788 -4.7658 31 1 1.0574 -0.5419 -5.0802 32 1 2.9922 0.2101 -6.8011 33 1 2.8989 -1.5061 -6.2995 34 1 4.8593 0.6285 -5.4634 35 1 5.1007 -1.1360 -5.6065 36 1 4.2505 0.0239 -1.0838 37 1 5.7963 0.8915 -1.3660 38 1 5.7612 -1.8306 -1.3495 39 1 6.7500 -0.9631 -2.5672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773951518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:31 Heat of formation + Delta-G solvation = -153.761240 kcal Electronic energy + Delta-G solvation = -22320.162484 eV Core-core repulsion = 19033.646643 eV Total energy + Delta-G solvation = -3286.515840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.23618 -40.08727 -37.49782 -36.52850 -36.05701 -34.31733 -31.51120 -30.83681 -29.73536 -27.48013 -27.34898 -24.30575 -23.86354 -21.92048 -21.59806 -20.89359 -19.11627 -18.51803 -17.79597 -17.28030 -17.06639 -16.42089 -16.21836 -16.01345 -15.66236 -15.11175 -14.78987 -14.49352 -14.20615 -13.89646 -13.80367 -13.66117 -13.49672 -13.02701 -12.91941 -12.78303 -12.73907 -12.38255 -12.30626 -12.26519 -12.14713 -12.10628 -11.58055 -11.14614 -11.12438 -10.81067 -10.60688 -10.47985 -9.72092 -8.17864 -6.35887 1.44434 1.46268 1.54262 1.74155 2.29485 2.41487 2.67330 2.90161 3.12379 3.41691 3.50960 3.63444 3.97106 4.04510 4.14246 4.24317 4.34679 4.38336 4.43506 4.54765 4.66050 4.73075 4.77664 4.85823 4.89504 4.90849 4.99190 5.08202 5.11513 5.17235 5.39680 5.41931 5.60409 5.67323 5.88679 6.08550 6.10254 6.71561 6.95548 7.31716 7.55380 8.88296 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026274 B = 0.006135 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.432355 B = 4563.248681 C = 5199.663391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.275 3.725 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.265 1.265 12 N -0.706 5.706 13 C 0.514 3.486 14 O -0.586 6.586 15 C -0.139 4.139 16 H 0.122 0.878 17 C -0.107 4.107 18 C -0.108 4.108 19 C -0.122 4.122 20 C 0.261 3.739 21 O -0.381 6.381 22 C -0.006 4.006 23 C 0.028 3.972 24 O -0.379 6.379 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.009 0.991 28 H 0.265 0.735 29 H 0.401 0.599 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.611 -7.504 -13.409 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.172 3.828 3 H 0.014 0.986 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.355 5.355 13 C 0.301 3.699 14 O -0.466 6.466 15 C -0.161 4.161 16 H 0.140 0.860 17 C -0.145 4.145 18 C -0.145 4.145 19 C -0.160 4.160 20 C 0.183 3.817 21 O -0.302 6.302 22 C -0.082 4.082 23 C -0.048 4.048 24 O -0.300 6.300 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.235 0.765 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.281 -6.540 -13.437 17.085 hybrid contribution -0.003 -0.190 1.535 1.547 sum 8.279 -6.730 -11.902 15.984 Atomic orbital electron populations 1.21912 0.98627 0.99368 0.99441 1.18282 0.90892 0.91737 0.81926 0.98645 1.21469 1.32675 1.13485 0.90630 0.90852 1.25802 0.94829 0.95517 1.02311 1.70056 1.36970 1.23953 1.24653 0.85407 0.78798 0.78642 0.77550 1.19272 1.21329 1.18964 1.46395 1.65367 1.13950 1.09824 1.20707 0.77118 0.86925 0.85131 1.90606 1.52271 1.18059 1.85668 1.22895 0.96569 1.02364 0.94240 0.85993 1.22410 0.99680 1.00717 0.91728 1.22337 0.91510 1.03679 0.96986 1.22457 1.00070 1.04207 0.89247 1.23811 0.88553 0.75496 0.93861 1.89301 1.82708 1.29369 1.28793 1.24708 0.99245 0.97333 0.86918 1.24343 0.94908 0.94519 0.90992 1.88825 1.57171 1.31202 1.52852 0.94130 0.91467 0.97193 0.92569 0.76477 0.92272 0.89456 0.88971 0.88717 0.89938 0.87677 0.91944 0.86360 0.86630 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.26 71.98 0.67 -6.32 16 2 C 0.27 14.42 2.56 44.24 0.11 14.54 16 3 H 0.00 -0.27 7.58 -2.38 -0.02 -0.29 16 4 C -0.54 -28.56 8.73 25.60 0.22 -28.34 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -52.76 11.32 21.45 0.24 -52.52 16 8 Si 0.97 41.47 29.54 68.60 2.03 43.50 16 9 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 10 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 N -0.71 -30.27 3.94 -446.11 -1.76 -32.03 16 13 C 0.51 21.68 4.68 87.66 0.41 22.09 16 14 O -0.59 -30.19 15.32 6.13 0.09 -30.10 16 15 C -0.14 -4.36 2.96 -10.55 -0.03 -4.39 16 16 H 0.12 3.29 8.08 -2.39 -0.02 3.27 16 17 C -0.11 -2.92 6.23 31.92 0.20 -2.72 16 18 C -0.11 -2.05 6.84 31.71 0.22 -1.84 16 19 C -0.12 -2.73 6.44 31.23 0.20 -2.53 16 20 C 0.26 7.69 1.36 31.08 0.04 7.73 16 21 O -0.38 -13.65 9.85 -121.90 -1.20 -14.86 16 22 C -0.01 -0.19 7.44 72.65 0.54 0.35 16 23 C 0.03 0.68 8.08 72.65 0.59 1.27 16 24 O -0.38 -10.32 10.78 -126.22 -1.36 -11.68 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.40 14.92 8.54 -92.70 -0.79 14.13 16 30 H 0.06 1.97 7.28 -2.39 -0.02 1.96 16 31 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.89 7.96 -2.39 -0.02 1.87 16 35 H 0.10 1.92 7.96 -2.39 -0.02 1.90 16 36 H 0.06 2.46 5.92 -2.39 -0.01 2.44 16 37 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -69.29 312.52 1.92 -67.37 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.26 Total: 29.20 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 3.62 Total: 1.12 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -1.52 Total: -84.55 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -2.47 Total: -56.64 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -69.29 1.92 -67.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773951518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.390 kcal (2) G-P(sol) polarization free energy of solvation -69.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds