Wall clock time and date at job start Mon Mar 30 2020 04:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46792 * 2 1 4 4 C 1.50694 * 109.47437 * 239.99387 * 2 1 3 5 5 H 1.07995 * 120.00674 * 240.00331 * 4 2 1 6 6 C 1.37884 * 119.99412 * 60.00534 * 4 2 1 7 7 N 1.31511 * 120.00561 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99585 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47063 * 119.99872 * 8 6 4 11 11 H 1.48504 * 109.47193 * 239.99531 * 8 6 4 12 12 N 1.46502 * 109.46711 * 119.99634 * 2 1 3 13 13 C 1.34778 * 120.00196 * 275.00149 * 12 2 1 14 14 O 1.21279 * 119.99690 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00283 * 179.97438 * 13 12 2 16 16 H 1.09008 * 110.04270 * 60.00847 * 15 13 12 17 17 C 1.54020 * 110.06014 * 298.55069 * 15 13 12 18 18 C 1.54320 * 106.57106 * 241.11225 * 17 15 13 19 19 C 1.54993 * 104.37892 * 336.43679 * 18 17 15 20 20 C 1.53641 * 110.10817 * 181.49655 * 15 13 12 21 21 O 1.43075 * 110.64207 * 23.40299 * 20 15 13 22 22 C 1.44949 * 104.60013 * 213.65972 * 21 20 15 23 23 C 1.54967 * 101.82658 * 35.41798 * 22 21 20 24 24 O 1.42685 * 110.88089 * 261.53553 * 20 15 13 25 25 H 1.09005 * 109.47324 * 60.00612 * 1 2 3 26 26 H 1.08998 * 109.47309 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47844 * 300.00121 * 1 2 3 28 28 H 0.96995 * 120.00490 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00077 * 95.00004 * 12 2 1 30 30 H 1.08994 * 110.03725 * 121.83551 * 17 15 13 31 31 H 1.08998 * 110.07804 * 0.40996 * 17 15 13 32 32 H 1.09002 * 110.47437 * 95.19995 * 18 17 15 33 33 H 1.09001 * 110.47268 * 217.67602 * 18 17 15 34 34 H 1.09006 * 110.76533 * 155.69510 * 19 18 17 35 35 H 1.09002 * 110.76653 * 279.08850 * 19 18 17 36 36 H 1.09003 * 110.95741 * 277.28005 * 22 21 20 37 37 H 1.09001 * 110.98908 * 153.56626 * 22 21 20 38 38 H 1.09000 * 110.68970 * 206.42811 * 23 22 21 39 39 H 1.08992 * 110.68858 * 83.23632 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6035 8 14 2.3227 -1.1197 -4.0078 9 1 3.1485 -2.2858 -3.6036 10 1 1.1680 -1.5868 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8580 1.1584 2.4117 15 6 2.6486 -0.7286 3.5879 16 1 3.6481 -1.1251 3.4090 17 6 1.6873 -1.8707 3.9674 18 6 1.1540 -1.5464 5.3787 19 6 2.2326 -0.6189 5.9941 20 6 2.6707 0.2367 4.7829 21 8 1.7507 1.3132 4.5789 22 6 2.3772 2.4550 5.2152 23 6 3.8772 2.1981 4.9226 24 8 3.9821 0.7597 4.9900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7083 1.1608 -3.4844 29 1 2.2489 -1.6317 1.1528 30 1 2.2220 -2.8204 3.9793 31 1 0.8615 -1.9161 3.2574 32 1 0.1971 -1.0284 5.3150 33 1 1.0544 -2.4583 5.9674 34 1 1.8036 0.0064 6.7771 35 1 3.0696 -1.2017 6.3787 36 1 2.1841 2.4580 6.2880 37 1 2.0450 3.3874 4.7587 38 1 4.5033 2.6660 5.6823 39 1 4.1426 2.5575 3.9285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773951519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:34 Heat of formation + Delta-G solvation = -128.474475 kcal Electronic energy + Delta-G solvation = -22035.793702 eV Core-core repulsion = 18750.374378 eV Total energy + Delta-G solvation = -3285.419324 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.83076 -38.46461 -36.13352 -34.77835 -34.55974 -32.26459 -29.88013 -29.67267 -28.01557 -26.46981 -25.19566 -23.14349 -22.01002 -20.78481 -20.20031 -19.08412 -17.45180 -17.02981 -16.18435 -15.77011 -15.27633 -15.07424 -14.76972 -14.57877 -14.05624 -13.76951 -13.30606 -12.98224 -12.61444 -12.52821 -12.30718 -12.16402 -11.81649 -11.69250 -11.27520 -11.19383 -11.09323 -11.03019 -10.87609 -10.72477 -10.52625 -10.24593 -10.18794 -9.90417 -9.45011 -8.97066 -8.59348 -8.42549 -7.74987 -6.08003 -4.16715 3.25883 3.33534 3.36520 3.51202 3.64541 4.04775 4.22633 4.41437 4.51357 4.66062 4.81658 5.00073 5.09407 5.23463 5.24084 5.39760 5.46146 5.57027 5.60902 5.64302 5.71180 5.84437 5.88955 5.93879 6.03028 6.10397 6.22642 6.31076 6.90080 7.05635 7.23517 7.36999 7.57225 7.66838 7.77130 7.99906 8.21805 8.79126 8.87441 9.30289 9.52167 10.97984 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.005074 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.257183 B = 5516.993396 C = 5800.390741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.714 5.714 13 C 0.509 3.491 14 O -0.525 6.525 15 C -0.125 4.125 16 H 0.108 0.892 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.142 4.142 20 C 0.268 3.732 21 O -0.318 6.318 22 C 0.018 3.982 23 C 0.025 3.975 24 O -0.378 6.378 25 H 0.088 0.912 26 H 0.024 0.976 27 H 0.015 0.985 28 H 0.263 0.737 29 H 0.386 0.614 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -2.553 16.563 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.064 0.936 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.363 5.363 13 C 0.292 3.708 14 O -0.401 6.401 15 C -0.147 4.147 16 H 0.126 0.874 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.180 4.180 20 C 0.189 3.811 21 O -0.237 6.237 22 C -0.059 4.059 23 C -0.052 4.052 24 O -0.299 6.299 25 H 0.107 0.893 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.217 0.783 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.699 -1.696 16.337 16.645 hybrid contribution 0.491 -0.777 -0.885 1.276 sum 3.190 -2.473 15.452 15.971 Atomic orbital electron populations 1.22059 0.98635 0.98940 1.00789 1.18668 0.90893 0.93867 0.80099 0.93614 1.21285 1.32141 1.13089 0.90419 0.92118 1.24894 0.94878 0.94974 0.99036 1.69916 1.36063 1.22578 1.23649 0.86412 0.78586 0.79535 0.82658 1.19759 1.20905 1.20928 1.46505 1.65935 1.13415 1.10437 1.19998 0.79139 0.87601 0.84040 1.90679 1.49672 1.15537 1.84239 1.22290 1.01865 0.96382 0.94151 0.87384 1.22105 0.98793 0.96756 0.97490 1.22269 0.98614 0.99125 0.95498 1.23048 0.99454 0.98499 0.96991 1.23462 0.76680 0.88340 0.92579 1.89516 1.40586 1.17434 1.76164 1.24271 0.91591 0.92385 0.97664 1.24168 0.97036 0.81186 1.02777 1.88766 1.28436 1.19605 1.93057 0.89346 0.95645 0.96627 0.92716 0.78255 0.90726 0.90412 0.90923 0.91077 0.90697 0.89837 0.91776 0.87700 0.88941 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.27 6.98 2.56 -69.08 -0.18 6.80 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -14.38 8.73 -34.44 -0.30 -14.68 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.36 11.32 55.43 0.63 -24.73 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 N -0.71 -15.47 4.91 -54.94 -0.27 -15.74 16 13 C 0.51 10.66 6.79 -10.99 -0.07 10.59 16 14 O -0.52 -12.82 13.48 -19.33 -0.26 -13.08 16 15 C -0.12 -2.02 3.05 -90.91 -0.28 -2.30 16 16 H 0.11 1.63 8.07 -51.92 -0.42 1.21 16 17 C -0.11 -1.49 6.38 -25.51 -0.16 -1.65 16 18 C -0.12 -1.38 6.81 -24.99 -0.17 -1.55 16 19 C -0.14 -1.73 6.34 -24.82 -0.16 -1.89 16 20 C 0.27 4.19 1.02 -25.54 -0.03 4.16 16 21 O -0.32 -5.62 7.85 -67.87 -0.53 -6.15 16 22 C 0.02 0.24 7.96 38.20 0.30 0.54 16 23 C 0.02 0.33 8.08 38.20 0.31 0.64 16 24 O -0.38 -5.85 10.93 -59.03 -0.65 -6.50 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.39 7.31 8.51 -40.82 -0.35 6.97 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.13 7.60 -51.93 -0.39 0.73 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -32.27 315.06 -7.90 -40.17 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.06 Total: 6.40 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.48 Total: -1.04 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.36 Total: -40.47 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.44 Total: -25.73 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.27 -7.90 -40.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773951519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.306 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds