Wall clock time and date at job start Mon Mar 30 2020 04:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46792 * 2 1 4 4 C 1.50694 * 109.47437 * 239.99387 * 2 1 3 5 5 H 1.07995 * 120.00674 * 240.00331 * 4 2 1 6 6 C 1.37884 * 119.99412 * 60.00534 * 4 2 1 7 7 N 1.31511 * 120.00561 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99585 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47063 * 119.99872 * 8 6 4 11 11 H 1.48504 * 109.47193 * 239.99531 * 8 6 4 12 12 N 1.46502 * 109.46711 * 119.99634 * 2 1 3 13 13 C 1.34778 * 120.00196 * 275.00149 * 12 2 1 14 14 O 1.21279 * 119.99690 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00283 * 179.97438 * 13 12 2 16 16 H 1.09008 * 110.04270 * 60.00847 * 15 13 12 17 17 C 1.54020 * 110.06014 * 298.55069 * 15 13 12 18 18 C 1.54320 * 106.57106 * 241.11225 * 17 15 13 19 19 C 1.54993 * 104.37892 * 336.43679 * 18 17 15 20 20 C 1.53641 * 110.10817 * 181.49655 * 15 13 12 21 21 O 1.43075 * 110.64207 * 23.40299 * 20 15 13 22 22 C 1.44949 * 104.60013 * 213.65972 * 21 20 15 23 23 C 1.54967 * 101.82658 * 35.41798 * 22 21 20 24 24 O 1.42685 * 110.88089 * 261.53553 * 20 15 13 25 25 H 1.09005 * 109.47324 * 60.00612 * 1 2 3 26 26 H 1.08998 * 109.47309 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47844 * 300.00121 * 1 2 3 28 28 H 0.96995 * 120.00490 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00077 * 95.00004 * 12 2 1 30 30 H 1.08994 * 110.03725 * 121.83551 * 17 15 13 31 31 H 1.08998 * 110.07804 * 0.40996 * 17 15 13 32 32 H 1.09002 * 110.47437 * 95.19995 * 18 17 15 33 33 H 1.09001 * 110.47268 * 217.67602 * 18 17 15 34 34 H 1.09006 * 110.76533 * 155.69510 * 19 18 17 35 35 H 1.09002 * 110.76653 * 279.08850 * 19 18 17 36 36 H 1.09003 * 110.95741 * 277.28005 * 22 21 20 37 37 H 1.09001 * 110.98908 * 153.56626 * 22 21 20 38 38 H 1.09000 * 110.68970 * 206.42811 * 23 22 21 39 39 H 1.08992 * 110.68858 * 83.23632 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6035 8 14 2.3227 -1.1197 -4.0078 9 1 3.1485 -2.2858 -3.6036 10 1 1.1680 -1.5868 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8580 1.1584 2.4117 15 6 2.6486 -0.7286 3.5879 16 1 3.6481 -1.1251 3.4090 17 6 1.6873 -1.8707 3.9674 18 6 1.1540 -1.5464 5.3787 19 6 2.2326 -0.6189 5.9941 20 6 2.6707 0.2367 4.7829 21 8 1.7507 1.3132 4.5789 22 6 2.3772 2.4550 5.2152 23 6 3.8772 2.1981 4.9226 24 8 3.9821 0.7597 4.9900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7083 1.1608 -3.4844 29 1 2.2489 -1.6317 1.1528 30 1 2.2220 -2.8204 3.9793 31 1 0.8615 -1.9161 3.2574 32 1 0.1971 -1.0284 5.3150 33 1 1.0544 -2.4583 5.9674 34 1 1.8036 0.0064 6.7771 35 1 3.0696 -1.2017 6.3787 36 1 2.1841 2.4580 6.2880 37 1 2.0450 3.3874 4.7587 38 1 4.5033 2.6660 5.6823 39 1 4.1426 2.5575 3.9285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773951519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:33 Heat of formation + Delta-G solvation = -150.288058 kcal Electronic energy + Delta-G solvation = -22036.739610 eV Core-core repulsion = 18750.374378 eV Total energy + Delta-G solvation = -3286.365232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02910 -40.07362 -37.31756 -36.55894 -35.90826 -34.24638 -31.48484 -30.75605 -29.57579 -27.55284 -27.34311 -24.22698 -23.68818 -22.03309 -21.56801 -20.75591 -19.04218 -18.22800 -17.68580 -17.33437 -16.99526 -16.32772 -16.14525 -15.88684 -15.47478 -15.33391 -14.72340 -14.43780 -14.15706 -13.94451 -13.75162 -13.52592 -13.32184 -12.96931 -12.88841 -12.85924 -12.71258 -12.37981 -12.27308 -12.17383 -12.10618 -12.05044 -11.66115 -11.10280 -11.02066 -10.68047 -10.60449 -10.07315 -9.64668 -8.17966 -6.35653 1.43507 1.44105 1.56730 1.94366 2.32559 2.46806 2.75015 2.99488 3.12152 3.44715 3.55061 3.76426 3.99481 4.05100 4.20359 4.29700 4.36184 4.48010 4.52155 4.59779 4.67241 4.75467 4.79323 4.91525 4.92526 4.92751 5.05198 5.10444 5.13881 5.17524 5.37100 5.44771 5.63268 5.71396 5.93833 6.11155 6.26232 6.73292 7.05462 7.32907 7.66709 8.88661 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.005074 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.257183 B = 5516.993396 C = 5800.390741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.274 3.726 3 H -0.007 1.007 4 C -0.546 4.546 5 H 0.072 0.928 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.283 1.283 12 N -0.711 5.711 13 C 0.501 3.499 14 O -0.565 6.565 15 C -0.123 4.123 16 H 0.120 0.880 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.130 4.130 20 C 0.255 3.745 21 O -0.357 6.357 22 C 0.013 3.987 23 C 0.023 3.977 24 O -0.389 6.389 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.008 0.992 28 H 0.265 0.735 29 H 0.401 0.599 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 -4.772 17.973 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.170 3.830 3 H 0.011 0.989 4 C -0.584 4.584 5 H 0.090 0.910 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.361 5.361 13 C 0.288 3.712 14 O -0.444 6.444 15 C -0.145 4.145 16 H 0.138 0.862 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.168 4.168 20 C 0.177 3.823 21 O -0.277 6.277 22 C -0.063 4.063 23 C -0.053 4.053 24 O -0.310 6.310 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.235 0.765 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.622 -3.945 17.777 18.566 hybrid contribution 0.214 0.010 -1.311 1.328 sum 3.837 -3.936 16.467 17.360 Atomic orbital electron populations 1.21860 0.98489 0.99246 0.99258 1.18259 0.90942 0.91678 0.82086 0.98875 1.21586 1.32440 1.13463 0.90879 0.91004 1.25833 0.94872 0.95595 1.02398 1.70066 1.37106 1.24060 1.24522 0.85267 0.78113 0.78492 0.78266 1.18355 1.20288 1.20949 1.46285 1.66102 1.14037 1.09649 1.20927 0.78000 0.87323 0.84978 1.90657 1.51197 1.17570 1.84981 1.22388 1.02899 0.97371 0.91832 0.86180 1.22159 0.97821 0.96865 0.97954 1.22287 0.97574 1.00344 0.94860 1.23025 1.00093 0.98100 0.95593 1.23812 0.76567 0.88241 0.93695 1.89465 1.41789 1.19066 1.77361 1.24490 0.91317 0.91275 0.99239 1.24279 0.97791 0.80560 1.02678 1.88735 1.28719 1.20538 1.92999 0.91644 0.94199 0.97279 0.92568 0.76478 0.87382 0.92213 0.92527 0.87682 0.89629 0.87866 0.88516 0.88098 0.85024 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 2 C 0.27 14.83 2.56 44.24 0.11 14.95 16 3 H -0.01 -0.43 7.58 -2.39 -0.02 -0.44 16 4 C -0.55 -29.78 8.73 25.60 0.22 -29.56 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.98 11.32 21.45 0.24 -53.74 16 8 Si 0.97 42.78 29.54 68.60 2.03 44.80 16 9 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.71 -31.28 4.91 -446.11 -2.19 -33.47 16 13 C 0.50 21.48 6.79 87.66 0.60 22.08 16 14 O -0.57 -28.95 13.48 20.77 0.28 -28.67 16 15 C -0.12 -3.85 3.05 -10.98 -0.03 -3.89 16 16 H 0.12 3.42 8.07 -2.38 -0.02 3.40 16 17 C -0.11 -2.64 6.38 31.39 0.20 -2.44 16 18 C -0.11 -2.31 6.81 31.72 0.22 -2.09 16 19 C -0.13 -2.77 6.34 31.83 0.20 -2.56 16 20 C 0.26 7.64 1.02 31.36 0.03 7.67 16 21 O -0.36 -12.66 7.85 -117.77 -0.92 -13.58 16 22 C 0.01 0.34 7.96 72.65 0.58 0.92 16 23 C 0.02 0.59 8.08 72.65 0.59 1.18 16 24 O -0.39 -11.52 10.93 -126.23 -1.38 -12.90 16 25 H 0.06 3.77 6.07 -2.38 -0.01 3.75 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.27 14.65 8.31 -92.71 -0.77 13.87 16 29 H 0.40 15.01 8.51 -92.71 -0.79 14.22 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.66 7.60 -2.39 -0.02 1.64 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 2.63 8.14 -2.39 -0.02 2.62 16 38 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -72.61 315.06 2.14 -70.47 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.26 Total: 25.88 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 3.83 Total: 1.20 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -1.95 Total: -87.21 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -2.02 Total: -55.15 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -72.61 2.14 -70.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773951519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.816 kcal (2) G-P(sol) polarization free energy of solvation -72.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds