Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20755 * 119.99930 * 2 1 4 4 C 1.50705 * 120.00013 * 179.97438 * 2 1 3 5 5 C 1.52995 * 109.47267 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47566 * 180.02562 * 5 4 2 7 7 O 1.20828 * 119.99306 * 0.02562 * 6 5 4 8 8 O 1.34228 * 120.00472 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00148 * 180.02562 * 8 6 5 10 10 C 1.53071 * 109.44101 * 89.79318 * 9 8 6 11 11 C 1.53201 * 109.29371 * 181.23756 * 10 9 8 12 12 N 1.46928 * 108.89275 * 305.57634 * 11 10 9 13 13 C 1.36934 * 120.63265 * 233.51651 * 12 11 10 14 14 H 1.07997 * 119.99862 * 151.82898 * 13 12 11 15 15 C 1.38806 * 120.00015 * 331.83027 * 13 12 11 16 16 N 1.31624 * 120.00191 * 343.08772 * 15 13 12 17 17 Si 1.86800 * 120.00146 * 163.08448 * 15 13 12 18 18 H 1.48503 * 109.47142 * 60.00161 * 17 15 13 19 19 H 1.48498 * 109.47084 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47267 * 300.00095 * 17 15 13 21 21 C 1.46932 * 118.73342 * 53.53882 * 12 11 10 22 22 C 1.53045 * 109.45900 * 209.99901 * 9 8 6 23 23 H 1.09001 * 109.47449 * 239.99673 * 1 2 3 24 24 H 1.08997 * 109.47205 * 0.02562 * 1 2 3 25 25 H 1.09010 * 109.46977 * 120.00234 * 1 2 3 26 26 H 1.08997 * 109.47045 * 59.99967 * 4 2 1 27 27 H 1.09000 * 109.47222 * 300.00500 * 4 2 1 28 28 H 1.09005 * 109.47268 * 60.00024 * 5 4 2 29 29 H 1.09000 * 109.47085 * 300.00188 * 5 4 2 30 30 H 1.08998 * 109.45966 * 329.97279 * 9 8 6 31 31 H 1.09002 * 109.39343 * 61.35998 * 10 9 8 32 32 H 1.09003 * 109.62467 * 301.25225 * 10 9 8 33 33 H 1.09000 * 109.58250 * 185.72113 * 11 10 9 34 34 H 1.08995 * 109.58477 * 65.43833 * 11 10 9 35 35 H 0.96995 * 120.00379 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.59017 * 66.18099 * 21 12 11 37 37 H 1.09009 * 109.58200 * 186.46074 * 21 12 11 38 38 H 1.09002 * 109.49555 * 58.67543 * 22 9 8 39 39 H 1.08992 * 109.52043 * 298.59544 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5183 -2.3307 0.0011 7 8 3.9141 -3.3770 0.0002 8 8 5.8606 -2.3307 0.0020 9 6 6.5197 -3.6244 0.0013 10 6 6.7474 -4.0794 -1.4424 11 6 7.4149 -5.4583 -1.4392 12 7 8.6358 -5.3940 -0.6243 13 6 9.8390 -5.8001 -1.1367 14 1 10.7566 -5.3639 -0.7708 15 6 9.8791 -6.7726 -2.1264 16 7 8.8292 -7.5370 -2.3410 17 14 11.4229 -6.9964 -3.1540 18 1 12.5627 -7.3407 -2.2664 19 1 11.2104 -8.0910 -4.1347 20 1 11.7229 -5.7350 -3.8780 21 6 8.5410 -4.8860 0.7512 22 6 7.8642 -3.5120 0.7238 23 1 -0.3634 -0.5139 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 1.9972 -1.8771 -0.8891 27 1 1.9971 -1.8764 0.8908 28 1 4.0278 -0.4538 0.8911 29 1 4.0284 -0.4542 -0.8889 30 1 5.8914 -4.3523 0.5145 31 1 7.3939 -3.3634 -1.9499 32 1 5.7913 -4.1393 -1.9624 33 1 7.6714 -5.7424 -2.4598 34 1 6.7314 -6.1942 -1.0159 35 1 8.8574 -8.2167 -3.0323 36 1 7.9483 -5.5734 1.3546 37 1 9.5405 -4.7949 1.1767 38 1 7.7008 -3.1665 1.7446 39 1 8.5024 -2.8024 0.1973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800398290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = -117.958898 kcal Electronic energy + Delta-G solvation = -20574.222958 eV Core-core repulsion = 17289.259623 eV Total energy + Delta-G solvation = -3284.963334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50837 -39.63841 -37.53390 -35.85209 -33.34786 -32.67094 -30.68607 -30.23620 -29.69457 -26.18105 -24.83523 -22.33304 -22.15117 -20.49879 -19.77716 -19.31007 -17.61355 -17.00179 -16.55413 -16.27346 -15.43720 -15.27644 -15.17324 -14.77299 -14.00945 -13.77856 -13.56980 -13.28260 -12.87916 -12.72870 -12.65420 -12.51981 -12.43348 -12.11157 -11.55293 -11.52266 -11.25083 -11.15872 -10.73786 -10.70696 -10.34256 -10.31021 -10.22905 -10.02712 -9.91806 -9.68376 -9.41739 -8.49478 -6.74047 -5.82311 -3.25671 1.61730 2.35803 2.81185 3.37653 3.43387 3.44718 3.81993 4.37060 4.47138 4.73089 4.73832 4.93342 5.01550 5.11420 5.23628 5.30864 5.36852 5.42062 5.50479 5.53361 5.61698 5.65284 5.72452 6.01127 6.19792 6.28316 6.45455 6.50412 6.57950 6.68406 6.86173 6.94558 7.14887 7.29600 7.59739 7.76529 7.95756 8.41016 9.16672 9.79544 10.36076 11.26698 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.044049 B = 0.003330 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.497295 B = 8406.753013 C = 8585.203500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.356 3.644 3 O -0.459 6.459 4 C -0.163 4.163 5 C -0.108 4.108 6 C 0.458 3.542 7 O -0.512 6.512 8 O -0.357 6.357 9 C 0.097 3.903 10 C -0.153 4.153 11 C 0.175 3.825 12 N -0.592 5.592 13 C -0.257 4.257 14 H 0.067 0.933 15 C 0.003 3.997 16 N -0.903 5.903 17 Si 0.905 3.095 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.148 3.852 22 C -0.128 4.128 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.022 0.978 35 H 0.255 0.745 36 H 0.021 0.979 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.140 12.588 4.984 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.232 3.768 3 O -0.333 6.333 4 C -0.200 4.200 5 C -0.145 4.145 6 C 0.301 3.699 7 O -0.401 6.401 8 O -0.274 6.274 9 C 0.044 3.956 10 C -0.193 4.193 11 C 0.049 3.951 12 N -0.315 5.315 13 C -0.386 4.386 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.734 3.266 18 H -0.208 1.208 19 H -0.216 1.216 20 H -0.210 1.210 21 C 0.021 3.979 22 C -0.167 4.167 23 H 0.112 0.888 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.954 12.643 4.860 19.447 hybrid contribution 0.594 -0.420 -0.595 0.940 sum -13.360 12.223 4.265 18.603 Atomic orbital electron populations 1.22309 0.94044 1.04989 1.04824 1.24609 0.92204 0.89913 0.70073 1.90436 1.72034 1.35134 1.35686 1.21965 0.93800 0.97655 1.06582 1.21138 0.93161 0.93471 1.06770 1.23501 0.82208 0.91684 0.72518 1.90658 1.69381 1.34377 1.45704 1.86533 1.20174 1.37849 1.82859 1.22945 0.93009 0.80850 0.98829 1.22671 1.00527 1.02117 0.93980 1.20757 0.86464 0.89208 0.98687 1.44112 1.05627 1.74120 1.07650 1.19148 0.85104 1.15667 1.18676 0.91521 1.25078 0.97431 0.95517 1.01537 1.70017 1.29885 1.20864 1.33904 0.86336 0.82749 0.77309 0.80172 1.20801 1.21599 1.20959 1.20891 0.98187 0.90652 0.88148 1.22225 0.94281 1.01355 0.98872 0.88798 0.89977 0.88768 0.87240 0.87319 0.87417 0.87343 0.90354 0.91724 0.92791 0.88875 0.95978 0.93452 0.96116 0.91777 0.92277 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.00 10.26 36.01 0.37 -0.63 16 2 C 0.36 2.87 7.27 -29.03 -0.21 2.66 16 3 O -0.46 -5.36 16.71 6.00 0.10 -5.26 16 4 C -0.16 -1.35 4.93 -27.88 -0.14 -1.49 16 5 C -0.11 -1.14 5.10 -27.89 -0.14 -1.28 16 6 C 0.46 6.77 7.93 36.00 0.29 7.06 16 7 O -0.51 -8.81 15.20 -18.75 -0.29 -9.10 16 8 O -0.36 -5.97 9.88 -39.25 -0.39 -6.36 16 9 C 0.10 1.82 2.41 -26.67 -0.06 1.75 16 10 C -0.15 -3.14 5.73 -26.59 -0.15 -3.29 16 11 C 0.17 4.27 5.30 -3.71 -0.02 4.25 16 12 N -0.59 -14.96 3.00 -172.31 -0.52 -15.48 16 13 C -0.26 -7.03 9.58 -15.06 -0.14 -7.17 16 14 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 15 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 16 N -0.90 -26.24 11.20 55.49 0.62 -25.62 16 17 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 22 C -0.13 -2.31 5.75 -26.61 -0.15 -2.46 16 23 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 25 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 26 H 0.11 0.86 8.10 -51.93 -0.42 0.44 16 27 H 0.11 0.82 8.10 -51.93 -0.42 0.40 16 28 H 0.11 1.04 8.10 -51.93 -0.42 0.62 16 29 H 0.11 1.10 8.10 -51.93 -0.42 0.67 16 30 H 0.08 1.54 7.16 -51.93 -0.37 1.17 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 2.52 6.06 -51.93 -0.31 2.20 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 1.28 7.93 -51.92 -0.41 0.87 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -32.27 325.56 -7.20 -39.48 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.13 Total: -1.65 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.48 Total: 2.47 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.11 Total: -41.10 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.57 Total: -20.71 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.27 -7.20 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800398290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.482 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds