Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20755 * 119.99930 * 2 1 4 4 C 1.50705 * 120.00013 * 179.97438 * 2 1 3 5 5 C 1.52995 * 109.47267 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47566 * 180.02562 * 5 4 2 7 7 O 1.20828 * 119.99306 * 0.02562 * 6 5 4 8 8 O 1.34228 * 120.00472 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00148 * 180.02562 * 8 6 5 10 10 C 1.53071 * 109.44101 * 89.79318 * 9 8 6 11 11 C 1.53201 * 109.29371 * 181.23756 * 10 9 8 12 12 N 1.46928 * 108.89275 * 305.57634 * 11 10 9 13 13 C 1.36934 * 120.63265 * 233.51651 * 12 11 10 14 14 H 1.07997 * 119.99862 * 151.82898 * 13 12 11 15 15 C 1.38806 * 120.00015 * 331.83027 * 13 12 11 16 16 N 1.31624 * 120.00191 * 343.08772 * 15 13 12 17 17 Si 1.86800 * 120.00146 * 163.08448 * 15 13 12 18 18 H 1.48503 * 109.47142 * 60.00161 * 17 15 13 19 19 H 1.48498 * 109.47084 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47267 * 300.00095 * 17 15 13 21 21 C 1.46932 * 118.73342 * 53.53882 * 12 11 10 22 22 C 1.53045 * 109.45900 * 209.99901 * 9 8 6 23 23 H 1.09001 * 109.47449 * 239.99673 * 1 2 3 24 24 H 1.08997 * 109.47205 * 0.02562 * 1 2 3 25 25 H 1.09010 * 109.46977 * 120.00234 * 1 2 3 26 26 H 1.08997 * 109.47045 * 59.99967 * 4 2 1 27 27 H 1.09000 * 109.47222 * 300.00500 * 4 2 1 28 28 H 1.09005 * 109.47268 * 60.00024 * 5 4 2 29 29 H 1.09000 * 109.47085 * 300.00188 * 5 4 2 30 30 H 1.08998 * 109.45966 * 329.97279 * 9 8 6 31 31 H 1.09002 * 109.39343 * 61.35998 * 10 9 8 32 32 H 1.09003 * 109.62467 * 301.25225 * 10 9 8 33 33 H 1.09000 * 109.58250 * 185.72113 * 11 10 9 34 34 H 1.08995 * 109.58477 * 65.43833 * 11 10 9 35 35 H 0.96995 * 120.00379 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.59017 * 66.18099 * 21 12 11 37 37 H 1.09009 * 109.58200 * 186.46074 * 21 12 11 38 38 H 1.09002 * 109.49555 * 58.67543 * 22 9 8 39 39 H 1.08992 * 109.52043 * 298.59544 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5183 -2.3307 0.0011 7 8 3.9141 -3.3770 0.0002 8 8 5.8606 -2.3307 0.0020 9 6 6.5197 -3.6244 0.0013 10 6 6.7474 -4.0794 -1.4424 11 6 7.4149 -5.4583 -1.4392 12 7 8.6358 -5.3940 -0.6243 13 6 9.8390 -5.8001 -1.1367 14 1 10.7566 -5.3639 -0.7708 15 6 9.8791 -6.7726 -2.1264 16 7 8.8292 -7.5370 -2.3410 17 14 11.4229 -6.9964 -3.1540 18 1 12.5627 -7.3407 -2.2664 19 1 11.2104 -8.0910 -4.1347 20 1 11.7229 -5.7350 -3.8780 21 6 8.5410 -4.8860 0.7512 22 6 7.8642 -3.5120 0.7238 23 1 -0.3634 -0.5139 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 1.9972 -1.8771 -0.8891 27 1 1.9971 -1.8764 0.8908 28 1 4.0278 -0.4538 0.8911 29 1 4.0284 -0.4542 -0.8889 30 1 5.8914 -4.3523 0.5145 31 1 7.3939 -3.3634 -1.9499 32 1 5.7913 -4.1393 -1.9624 33 1 7.6714 -5.7424 -2.4598 34 1 6.7314 -6.1942 -1.0159 35 1 8.8574 -8.2167 -3.0323 36 1 7.9483 -5.5734 1.3546 37 1 9.5405 -4.7949 1.1767 38 1 7.7008 -3.1665 1.7446 39 1 8.5024 -2.8024 0.1973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800398290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = -136.702280 kcal Electronic energy + Delta-G solvation = -20575.035732 eV Core-core repulsion = 17289.259623 eV Total energy + Delta-G solvation = -3285.776108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.73853 -40.43526 -39.12648 -37.35370 -34.65052 -34.09774 -32.12093 -31.56637 -31.07599 -27.49340 -26.32911 -24.01296 -23.84122 -21.72246 -21.03672 -20.46073 -18.89088 -18.78162 -17.63927 -17.42615 -16.83410 -16.36289 -16.16779 -15.87398 -15.57138 -15.42665 -14.98456 -14.80842 -14.33625 -14.19675 -14.04109 -13.28855 -13.08573 -13.02231 -12.96177 -12.95373 -12.82476 -12.59433 -12.40204 -12.26087 -12.13564 -11.98568 -11.86660 -11.62299 -11.39036 -11.07785 -10.68466 -10.56382 -8.77281 -7.91454 -5.38020 1.00397 1.16512 1.47152 1.49896 1.56717 1.63178 2.49742 3.13673 3.25489 3.52642 3.59468 3.77037 3.85963 3.88446 4.03606 4.15025 4.26383 4.36407 4.52274 4.55077 4.66450 4.71066 4.72946 4.82576 4.85932 4.86623 4.94437 4.95774 5.04935 5.23506 5.24065 5.36128 5.52582 5.62322 5.65016 6.34882 6.54375 6.71066 7.09236 7.78633 8.31468 9.16114 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.044049 B = 0.003330 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.497295 B = 8406.753013 C = 8585.203500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.365 3.635 3 O -0.500 6.500 4 C -0.162 4.162 5 C -0.101 4.101 6 C 0.457 3.543 7 O -0.537 6.537 8 O -0.357 6.357 9 C 0.104 3.896 10 C -0.140 4.140 11 C 0.184 3.816 12 N -0.611 5.611 13 C -0.267 4.267 14 H 0.073 0.927 15 C -0.051 4.051 16 N -0.937 5.937 17 Si 0.971 3.029 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.278 1.278 21 C 0.143 3.857 22 C -0.115 4.115 23 H 0.114 0.886 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.061 0.939 34 H -0.002 1.002 35 H 0.251 0.749 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 14.096 5.635 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.244 3.756 3 O -0.377 6.377 4 C -0.199 4.199 5 C -0.138 4.138 6 C 0.302 3.698 7 O -0.427 6.427 8 O -0.273 6.273 9 C 0.050 3.950 10 C -0.179 4.179 11 C 0.058 3.942 12 N -0.335 5.335 13 C -0.397 4.397 14 H 0.091 0.909 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.799 3.201 18 H -0.198 1.198 19 H -0.221 1.221 20 H -0.204 1.204 21 C 0.018 3.982 22 C -0.154 4.154 23 H 0.132 0.868 24 H 0.098 0.902 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.016 0.984 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.477 14.175 5.538 21.004 hybrid contribution 0.683 -0.892 -0.744 1.347 sum -13.795 13.283 4.794 19.741 Atomic orbital electron populations 1.22326 0.91292 1.05472 1.06609 1.24936 0.93572 0.88858 0.68270 1.90437 1.73027 1.36280 1.37974 1.22022 0.92227 0.98215 1.07422 1.21249 0.94001 0.90979 1.07602 1.24355 0.81397 0.92875 0.71218 1.90655 1.69491 1.35713 1.46836 1.86547 1.21471 1.36139 1.83183 1.22637 0.93563 0.81731 0.97101 1.22423 1.00148 0.99585 0.95788 1.20471 0.86229 0.90860 0.96669 1.44373 1.05132 1.74435 1.09544 1.19526 0.86152 1.15284 1.18738 0.90943 1.25876 1.00400 0.95537 1.02825 1.70177 1.31957 1.21623 1.34487 0.85291 0.79416 0.77015 0.78422 1.19813 1.22095 1.20364 1.21057 0.99184 0.92025 0.85949 1.22041 0.93404 0.99237 1.00753 0.86779 0.90201 0.86966 0.86654 0.86285 0.86201 0.86704 0.91447 0.91832 0.92352 0.92016 0.98409 0.93970 0.96310 0.90852 0.88997 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.41 10.26 71.24 0.73 -0.68 16 2 C 0.36 5.12 7.27 29.10 0.21 5.34 16 3 O -0.50 -11.00 16.71 -1.44 -0.02 -11.03 16 4 C -0.16 -2.33 4.93 29.85 0.15 -2.18 16 5 C -0.10 -1.93 5.10 29.85 0.15 -1.77 16 6 C 0.46 12.77 7.93 71.24 0.56 13.33 16 7 O -0.54 -17.86 15.20 21.96 0.33 -17.53 16 8 O -0.36 -11.27 9.88 -51.40 -0.51 -11.78 16 9 C 0.10 3.77 2.41 30.63 0.07 3.85 16 10 C -0.14 -5.74 5.73 30.69 0.18 -5.56 16 11 C 0.18 9.23 5.30 86.37 0.46 9.69 16 12 N -0.61 -31.12 3.00 -699.07 -2.09 -33.22 16 13 C -0.27 -14.69 9.58 84.03 0.81 -13.89 16 14 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 15 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 16 N -0.94 -55.94 11.20 21.65 0.24 -55.70 16 17 Si 0.97 44.80 29.59 68.60 2.03 46.83 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 C 0.14 5.89 6.52 86.36 0.56 6.45 16 22 C -0.12 -3.93 5.75 30.67 0.18 -3.76 16 23 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 24 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 25 H 0.11 0.43 8.14 -2.38 -0.02 0.42 16 26 H 0.12 1.57 8.10 -2.39 -0.02 1.55 16 27 H 0.12 1.50 8.10 -2.39 -0.02 1.48 16 28 H 0.12 2.05 8.10 -2.38 -0.02 2.03 16 29 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 30 H 0.07 2.61 7.16 -2.39 -0.02 2.60 16 31 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 3.47 6.06 -2.39 -0.01 3.45 16 34 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 2.84 7.93 -2.38 -0.02 2.82 16 38 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -70.16 325.56 5.48 -64.69 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.02 Total: 9.36 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 4.47 Total: 8.37 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -1.85 Total: -88.91 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.20 Total: -40.33 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -70.16 5.48 -64.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800398290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.017 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds