Wall clock time and date at job start Mon Mar 30 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46760 * 124.34546 * 2 1 4 4 C 1.54486 * 105.46973 * 162.96460 * 3 2 1 5 5 H 1.08994 * 110.96971 * 143.57667 * 4 3 2 6 6 O 1.45206 * 110.96928 * 267.29943 * 4 3 2 7 7 C 1.34224 * 117.00077 * 206.91124 * 6 4 3 8 8 O 1.20833 * 120.00103 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00302 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47581 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47606 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47251 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46835 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00169 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99658 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00016 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99706 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47515 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46930 * 120.00182 * 17 15 13 20 20 H 1.48497 * 109.47526 * 239.99837 * 17 15 13 21 21 C 1.54627 * 101.79957 * 25.43271 * 4 3 2 22 22 C 1.34420 * 124.34795 * 179.97438 * 2 1 3 23 23 O 1.21280 * 124.94179 * 0.46242 * 22 2 1 24 24 H 1.08999 * 109.47247 * 89.99592 * 1 2 3 25 25 H 1.08997 * 109.47119 * 209.99442 * 1 2 3 26 26 H 1.08997 * 109.46912 * 329.99477 * 1 2 3 27 27 H 1.09000 * 110.24687 * 43.96688 * 3 2 1 28 28 H 1.08992 * 110.32186 * 282.00044 * 3 2 1 29 29 H 1.09009 * 109.46972 * 299.99362 * 9 7 6 30 30 H 1.08995 * 109.47473 * 59.99636 * 9 7 6 31 31 H 1.09005 * 109.46903 * 300.00018 * 10 9 7 32 32 H 1.09000 * 109.47608 * 59.99121 * 10 9 7 33 33 H 1.09002 * 109.46566 * 299.99970 * 11 10 9 34 34 H 1.09000 * 109.47303 * 59.98998 * 11 10 9 35 35 H 1.08997 * 109.47192 * 299.99573 * 12 11 10 36 36 H 1.09003 * 109.46861 * 59.99913 * 12 11 10 37 37 H 0.97002 * 119.99857 * 179.97438 * 16 15 13 38 38 H 1.08999 * 110.48597 * 93.85897 * 21 4 3 39 39 H 1.08997 * 110.49142 * 216.50918 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7488 0.4362 5 1 4.4754 1.3015 -0.0954 6 8 3.8682 0.8770 1.8729 7 6 5.1183 1.0563 2.3272 8 8 6.0425 1.1041 1.5503 9 6 5.3696 1.1968 3.8064 10 6 6.8671 1.3899 4.0534 11 6 7.1222 1.5332 5.5552 12 6 8.6198 1.7256 5.8021 13 6 8.8708 1.8674 7.2813 14 1 8.0449 1.8241 7.9758 15 6 10.1550 2.0523 7.7479 16 7 11.1607 2.1055 6.9022 17 14 10.4663 2.2274 9.5814 18 1 9.1779 2.1320 10.3136 19 1 11.3742 1.1433 10.0350 20 1 11.0943 3.5452 9.8534 21 6 3.6909 -0.7378 0.0108 22 6 2.2235 -1.1098 0.0005 23 8 1.7946 -2.2442 -0.0070 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.8982 1.9384 0.7100 28 1 2.3312 1.6441 -0.9997 29 1 4.8247 2.0608 4.1871 30 1 5.0293 0.2976 4.3199 31 1 7.4125 0.5262 3.6727 32 1 7.2072 2.2893 3.5400 33 1 6.5769 2.3970 5.9354 34 1 6.7821 0.6341 6.0689 35 1 9.1647 0.8615 5.4219 36 1 8.9601 2.6247 5.2883 37 1 12.0641 2.2360 7.2304 38 1 4.1208 -0.8527 -0.9842 39 1 4.2339 -1.3455 0.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805904113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:11 Heat of formation + Delta-G solvation = -137.872501 kcal Electronic energy + Delta-G solvation = -19854.323143 eV Core-core repulsion = 16568.496290 eV Total energy + Delta-G solvation = -3285.826853 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.22392 -40.02428 -37.24987 -36.04301 -35.02695 -32.83012 -32.50363 -29.96022 -28.11465 -26.99942 -25.91113 -23.36122 -21.93626 -20.68852 -20.08741 -20.00069 -18.03779 -17.26416 -16.56745 -16.41415 -16.23076 -16.07715 -15.48438 -14.80406 -14.45559 -14.05095 -13.94369 -13.65163 -13.36095 -13.06743 -12.75725 -12.69727 -12.41714 -12.25577 -11.91277 -11.71925 -11.68213 -11.09437 -11.04349 -10.64004 -10.60715 -10.50113 -10.43883 -10.13080 -9.68289 -9.32469 -9.19770 -9.02970 -8.33788 -5.98436 -4.00941 2.13147 2.20894 2.37783 2.58281 3.31701 3.39160 3.43046 3.82385 3.87524 4.21734 4.46373 4.52212 4.75276 4.84143 4.88417 4.96276 5.10904 5.11402 5.21186 5.28512 5.30816 5.37330 5.38034 5.68083 6.00973 6.01184 6.13914 6.25350 6.42779 6.62627 6.72818 6.90815 7.13231 7.66863 7.70314 7.76632 7.84408 8.02271 8.44048 9.06840 9.63104 11.12939 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.047705 B = 0.002568 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.796726 B =10900.462268 C =10999.485744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.624 5.624 3 C 0.108 3.892 4 C 0.072 3.928 5 H 0.118 0.882 6 O -0.349 6.349 7 C 0.461 3.539 8 O -0.500 6.500 9 C -0.112 4.112 10 C -0.109 4.109 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.170 4.170 22 C 0.522 3.478 23 O -0.528 6.528 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.121 0.879 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.594 -0.394 -15.568 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.360 5.360 3 C -0.015 4.015 4 C 0.016 3.984 5 H 0.136 0.864 6 O -0.267 6.267 7 C 0.304 3.696 8 O -0.386 6.386 9 C -0.149 4.149 10 C -0.146 4.146 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.559 4.559 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.210 4.210 22 C 0.310 3.690 23 O -0.404 6.404 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.139 0.861 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.462 -0.965 -15.844 25.898 hybrid contribution 0.320 0.197 0.860 0.939 sum -20.142 -0.768 -14.984 25.116 Atomic orbital electron populations 1.21569 0.77517 1.03456 1.01943 1.48133 1.06759 1.07077 1.74001 1.22223 0.88799 0.87947 1.02521 1.23532 0.98190 0.96411 0.80264 0.86435 1.86654 1.32425 1.82949 1.24683 1.24317 0.80062 0.71826 0.93363 1.90679 1.43910 1.45598 1.58452 1.21642 1.01236 1.05381 0.86682 1.21589 0.90723 1.03040 0.99268 1.21651 1.01112 1.00370 0.91647 1.19102 0.88934 0.97213 0.96497 1.21309 0.92685 1.49248 0.92615 0.92640 1.25044 0.96370 0.95478 0.97706 1.69981 0.99273 1.50296 1.33920 0.86547 0.78219 0.77634 0.85654 1.19757 1.21039 1.21041 1.22812 0.95457 0.96981 1.05772 1.20777 0.88997 0.84363 0.74912 1.90739 1.78560 1.21009 1.50142 0.92446 0.90528 0.90771 0.88664 0.88783 0.87755 0.87772 0.91482 0.91480 0.93184 0.93182 0.96530 0.96538 0.93068 0.86052 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 10.96 59.85 0.66 1.25 16 2 N -0.62 -5.15 3.33 -180.24 -0.60 -5.75 16 3 C 0.11 0.64 7.11 -3.12 -0.02 0.61 16 4 C 0.07 0.59 3.47 -25.10 -0.09 0.51 16 5 H 0.12 0.91 7.22 -51.93 -0.38 0.54 16 6 O -0.35 -3.74 10.00 -39.24 -0.39 -4.13 16 7 C 0.46 5.86 7.96 36.00 0.29 6.15 16 8 O -0.50 -7.68 15.23 -18.76 -0.29 -7.97 16 9 C -0.11 -1.38 5.81 -27.89 -0.16 -1.54 16 10 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 11 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 12 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 13 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.17 -1.53 6.63 -26.69 -0.18 -1.70 16 22 C 0.52 5.80 8.02 -10.81 -0.09 5.71 16 23 O -0.53 -7.97 17.59 5.56 0.10 -7.87 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.10 0.48 8.11 -51.93 -0.42 0.06 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 1.10 8.14 -51.92 -0.42 0.68 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.11 1.13 8.11 -51.93 -0.42 0.71 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -35.09 334.51 -7.06 -42.15 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -6.24 Total: -5.29 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.40 Total: -6.41 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.14 Total: -32.17 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.58 Total: -19.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.09 -7.06 -42.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805904113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.718 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds