Wall clock time and date at job start Mon Mar 30 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46760 * 124.34546 * 2 1 4 4 C 1.54486 * 105.46973 * 162.96460 * 3 2 1 5 5 H 1.08994 * 110.96971 * 143.57667 * 4 3 2 6 6 O 1.45206 * 110.96928 * 267.29943 * 4 3 2 7 7 C 1.34224 * 117.00077 * 206.91124 * 6 4 3 8 8 O 1.20833 * 120.00103 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00302 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47581 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47606 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47251 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46835 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00169 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99658 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00016 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99706 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47515 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46930 * 120.00182 * 17 15 13 20 20 H 1.48497 * 109.47526 * 239.99837 * 17 15 13 21 21 C 1.54627 * 101.79957 * 25.43271 * 4 3 2 22 22 C 1.34420 * 124.34795 * 179.97438 * 2 1 3 23 23 O 1.21280 * 124.94179 * 0.46242 * 22 2 1 24 24 H 1.08999 * 109.47247 * 89.99592 * 1 2 3 25 25 H 1.08997 * 109.47119 * 209.99442 * 1 2 3 26 26 H 1.08997 * 109.46912 * 329.99477 * 1 2 3 27 27 H 1.09000 * 110.24687 * 43.96688 * 3 2 1 28 28 H 1.08992 * 110.32186 * 282.00044 * 3 2 1 29 29 H 1.09009 * 109.46972 * 299.99362 * 9 7 6 30 30 H 1.08995 * 109.47473 * 59.99636 * 9 7 6 31 31 H 1.09005 * 109.46903 * 300.00018 * 10 9 7 32 32 H 1.09000 * 109.47608 * 59.99121 * 10 9 7 33 33 H 1.09002 * 109.46566 * 299.99970 * 11 10 9 34 34 H 1.09000 * 109.47303 * 59.98998 * 11 10 9 35 35 H 1.08997 * 109.47192 * 299.99573 * 12 11 10 36 36 H 1.09003 * 109.46861 * 59.99913 * 12 11 10 37 37 H 0.97002 * 119.99857 * 179.97438 * 16 15 13 38 38 H 1.08999 * 110.48597 * 93.85897 * 21 4 3 39 39 H 1.08997 * 110.49142 * 216.50918 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7488 0.4362 5 1 4.4754 1.3015 -0.0954 6 8 3.8682 0.8770 1.8729 7 6 5.1183 1.0563 2.3272 8 8 6.0425 1.1041 1.5503 9 6 5.3696 1.1968 3.8064 10 6 6.8671 1.3899 4.0534 11 6 7.1222 1.5332 5.5552 12 6 8.6198 1.7256 5.8021 13 6 8.8708 1.8674 7.2813 14 1 8.0449 1.8241 7.9758 15 6 10.1550 2.0523 7.7479 16 7 11.1607 2.1055 6.9022 17 14 10.4663 2.2274 9.5814 18 1 9.1779 2.1320 10.3136 19 1 11.3742 1.1433 10.0350 20 1 11.0943 3.5452 9.8534 21 6 3.6909 -0.7378 0.0108 22 6 2.2235 -1.1098 0.0005 23 8 1.7946 -2.2442 -0.0070 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.8982 1.9384 0.7100 28 1 2.3312 1.6441 -0.9997 29 1 4.8247 2.0608 4.1871 30 1 5.0293 0.2976 4.3199 31 1 7.4125 0.5262 3.6727 32 1 7.2072 2.2893 3.5400 33 1 6.5769 2.3970 5.9354 34 1 6.7821 0.6341 6.0689 35 1 9.1647 0.8615 5.4219 36 1 8.9601 2.6247 5.2883 37 1 12.0641 2.2360 7.2304 38 1 4.1208 -0.8527 -0.9842 39 1 4.2339 -1.3455 0.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805904113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:10 Heat of formation + Delta-G solvation = -160.192745 kcal Electronic energy + Delta-G solvation = -19855.291022 eV Core-core repulsion = 16568.496290 eV Total energy + Delta-G solvation = -3286.794731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04484 -40.91787 -38.18627 -36.94938 -36.56448 -34.65645 -33.29564 -31.59493 -28.79360 -27.90371 -27.29256 -24.82226 -22.99314 -21.91549 -21.45131 -20.74615 -18.95873 -18.39805 -18.03251 -17.51250 -17.26268 -16.87099 -16.50466 -16.24610 -16.03688 -14.88442 -14.69125 -14.62734 -14.53362 -14.18203 -13.85210 -13.59721 -13.53636 -13.32227 -13.26503 -13.03927 -12.85456 -12.50952 -12.32411 -12.18071 -12.17347 -11.90460 -11.60631 -11.37244 -11.27777 -11.03234 -10.98153 -10.54394 -9.84359 -8.18275 -6.29582 1.16340 1.38377 1.41571 1.41931 1.54892 1.56261 1.97445 2.42657 3.15003 3.16133 3.23317 3.49177 3.75852 3.96543 4.11111 4.16791 4.34018 4.36640 4.42644 4.54733 4.62247 4.65266 4.68623 4.73496 4.81242 4.86449 4.88246 5.16867 5.28005 5.33966 5.42624 5.43090 5.58354 5.79713 5.89868 5.93706 6.26812 6.71862 6.89339 6.99018 7.40036 8.94037 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.047705 B = 0.002568 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.796726 B =10900.462268 C =10999.485744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.621 5.621 3 C 0.112 3.888 4 C 0.067 3.933 5 H 0.127 0.873 6 O -0.347 6.347 7 C 0.468 3.532 8 O -0.533 6.533 9 C -0.105 4.105 10 C -0.100 4.100 11 C -0.097 4.097 12 C 0.018 3.982 13 C -0.540 4.540 14 H 0.065 0.935 15 C -0.006 4.006 16 N -0.937 5.937 17 Si 0.967 3.033 18 H -0.258 1.258 19 H -0.280 1.280 20 H -0.279 1.279 21 C -0.168 4.168 22 C 0.511 3.489 23 O -0.581 6.581 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.060 0.940 35 H -0.014 1.014 36 H -0.011 1.011 37 H 0.263 0.737 38 H 0.142 0.858 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.536 0.826 -15.023 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.354 5.354 3 C -0.010 4.010 4 C 0.011 3.989 5 H 0.145 0.855 6 O -0.264 6.264 7 C 0.313 3.687 8 O -0.422 6.422 9 C -0.142 4.142 10 C -0.138 4.138 11 C -0.135 4.135 12 C -0.019 4.019 13 C -0.578 4.578 14 H 0.083 0.917 15 C -0.203 4.203 16 N -0.578 5.578 17 Si 0.791 3.209 18 H -0.182 1.182 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.208 4.208 22 C 0.300 3.700 23 O -0.461 6.461 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.004 0.996 36 H 0.007 0.993 37 H 0.071 0.929 38 H 0.159 0.841 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.448 0.297 -15.300 27.168 hybrid contribution 0.900 -0.159 0.623 1.106 sum -21.548 0.137 -14.678 26.072 Atomic orbital electron populations 1.21755 0.76307 1.03941 1.03016 1.48323 1.07749 1.07088 1.72234 1.22482 0.86631 0.86997 1.04842 1.23828 1.00205 0.95974 0.78846 0.85539 1.86631 1.30970 1.82377 1.26424 1.24229 0.80257 0.70983 0.93221 1.90677 1.44988 1.47275 1.59259 1.21501 0.98096 1.07539 0.87081 1.21353 0.93955 1.01769 0.96717 1.21444 0.96574 1.01389 0.94066 1.19060 0.93052 0.94536 0.95243 1.21792 0.93216 1.48875 0.93925 0.91687 1.26054 0.96190 0.95020 1.03075 1.70124 0.99838 1.51348 1.36461 0.85368 0.78574 0.77672 0.79241 1.18211 1.20619 1.20453 1.22825 0.94188 0.97293 1.06541 1.21127 0.90080 0.84281 0.74551 1.90703 1.79484 1.23066 1.52885 0.91111 0.92350 0.87968 0.86914 0.85330 0.85035 0.85887 0.93197 0.92670 0.91761 0.92176 0.99552 0.99295 0.92870 0.84056 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 10.96 127.77 1.40 2.33 16 2 N -0.62 -8.92 3.33 -842.75 -2.81 -11.73 16 3 C 0.11 0.93 7.11 86.83 0.62 1.55 16 4 C 0.07 0.96 3.47 31.65 0.11 1.07 16 5 H 0.13 1.67 7.22 -2.39 -0.02 1.65 16 6 O -0.35 -6.66 10.00 -51.35 -0.51 -7.17 16 7 C 0.47 11.15 7.96 71.23 0.57 11.72 16 8 O -0.53 -16.05 15.23 21.94 0.33 -15.71 16 9 C -0.11 -2.36 5.81 29.85 0.17 -2.19 16 10 C -0.10 -3.26 4.50 30.59 0.14 -3.12 16 11 C -0.10 -3.75 5.15 30.59 0.16 -3.59 16 12 C 0.02 0.96 4.97 29.85 0.15 1.11 16 13 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16 14 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 15 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 16 N -0.94 -58.03 13.29 21.45 0.28 -57.75 16 17 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 18 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 C -0.17 -2.88 6.63 30.62 0.20 -2.67 16 22 C 0.51 11.08 8.02 87.93 0.71 11.79 16 23 O -0.58 -18.01 17.59 -3.03 -0.05 -18.07 16 24 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.06 0.83 7.93 -2.39 -0.02 0.81 16 26 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.11 0.64 8.11 -2.39 -0.02 0.62 16 28 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 1.77 8.10 -2.38 -0.02 1.75 16 32 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.10 1.96 8.11 -2.39 -0.02 1.94 16 Total: -1.00 -78.58 334.51 5.21 -73.37 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.02 Total: 3.09 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 4.92 Total: -12.38 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -2.52 Total: -69.48 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.23 Total: -40.94 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -78.58 5.21 -73.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805904113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.821 kcal (2) G-P(sol) polarization free energy of solvation -78.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds