Wall clock time and date at job start Mon Mar 30 2020 04:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46762 * 124.35261 * 2 1 4 4 C 1.54477 * 105.47582 * 163.00671 * 3 2 1 5 5 H 1.08996 * 110.96688 * 267.26199 * 4 3 2 6 6 O 1.45196 * 110.97147 * 143.53267 * 4 3 2 7 7 C 1.34234 * 116.99938 * 150.00012 * 6 4 3 8 8 O 1.20822 * 119.99973 * 359.97438 * 7 6 4 9 9 C 1.50696 * 119.99738 * 180.02562 * 7 6 4 10 10 C 1.53004 * 109.46630 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46977 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47274 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99854 * 359.72512 * 15 13 12 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 13 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 13 21 21 C 1.54632 * 101.76536 * 25.41457 * 4 3 2 22 22 C 1.34425 * 124.34512 * 180.02562 * 2 1 3 23 23 O 1.21277 * 124.94080 * 0.41931 * 22 2 1 24 24 H 1.09002 * 109.47561 * 89.99798 * 1 2 3 25 25 H 1.09002 * 109.47247 * 209.99987 * 1 2 3 26 26 H 1.09004 * 109.47322 * 330.00121 * 1 2 3 27 27 H 1.08996 * 110.24619 * 44.00280 * 3 2 1 28 28 H 1.09006 * 110.24538 * 282.00572 * 3 2 1 29 29 H 1.08988 * 109.47520 * 59.99835 * 9 7 6 30 30 H 1.08997 * 109.47026 * 299.98961 * 9 7 6 31 31 H 1.08999 * 109.47785 * 59.99993 * 10 9 7 32 32 H 1.09000 * 109.46944 * 299.99068 * 10 9 7 33 33 H 1.09004 * 109.47166 * 59.99234 * 11 10 9 34 34 H 1.09005 * 109.46988 * 299.99622 * 11 10 9 35 35 H 1.09004 * 109.47330 * 59.99726 * 12 11 10 36 36 H 1.08997 * 109.47279 * 300.00213 * 12 11 10 37 37 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 38 38 H 1.08995 * 110.48353 * 93.88003 * 21 4 3 39 39 H 1.08997 * 110.48590 * 216.52842 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7012 0.7485 0.4351 5 1 3.8276 0.8450 1.5134 6 8 4.7325 1.4844 -0.2742 7 6 5.8968 1.6727 0.3667 8 8 6.0489 1.2376 1.4835 9 6 7.0138 2.4279 -0.3064 10 6 8.2194 2.4993 0.6329 11 6 9.3538 3.2655 -0.0507 12 6 10.5592 3.3375 0.8887 13 6 11.6767 4.0916 0.2152 14 1 11.5408 4.4803 -0.7833 15 6 12.8729 4.2845 0.8732 16 7 13.8479 4.9431 0.2856 17 14 13.1057 3.6176 2.6026 18 1 13.6521 2.2386 2.5319 19 1 14.0524 4.4878 3.3453 20 1 11.7975 3.5963 3.3051 21 6 3.6898 -0.7379 0.0092 22 6 2.2234 -1.1099 -0.0005 23 8 1.7944 -2.2442 -0.0083 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.8987 1.9381 0.7104 28 1 2.3304 1.6431 -1.0003 29 1 6.6781 3.4371 -0.5447 30 1 7.2987 1.9135 -1.2241 31 1 8.5551 1.4900 0.8708 32 1 7.9349 3.0135 1.5509 33 1 9.0184 4.2750 -0.2890 34 1 9.6383 2.7510 -0.9686 35 1 10.8947 2.3282 1.1274 36 1 10.2745 3.8522 1.8064 37 1 14.6896 5.0784 0.7484 38 1 4.1191 -0.8529 -0.9860 39 1 4.2328 -1.3462 0.7326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805904114.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:13 Heat of formation + Delta-G solvation = -134.130541 kcal Electronic energy + Delta-G solvation = -19760.346514 eV Core-core repulsion = 16474.681925 eV Total energy + Delta-G solvation = -3285.664589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26354 -40.19227 -37.35756 -36.21064 -35.18458 -32.84031 -32.51962 -30.36765 -28.16997 -27.14276 -26.14912 -23.26184 -21.90538 -20.68542 -20.14117 -20.10670 -18.10278 -17.37900 -16.72678 -16.56226 -16.43314 -16.25360 -15.51625 -14.89651 -14.23862 -14.20790 -14.02908 -13.92395 -13.50969 -12.97627 -12.88091 -12.80257 -12.68152 -12.41482 -12.26014 -11.84069 -11.60461 -11.21651 -11.17209 -10.85461 -10.65005 -10.61789 -10.26303 -9.92017 -9.72251 -9.58241 -9.28389 -9.17363 -8.52981 -6.03862 -4.01803 2.02816 2.10334 2.13753 2.60608 3.32334 3.39727 3.44352 3.77867 3.85288 4.16224 4.41537 4.46509 4.67367 4.77831 4.84353 4.91441 5.02817 5.07281 5.11217 5.21883 5.24840 5.30655 5.32173 5.58755 5.88148 5.90714 5.97884 6.16357 6.27428 6.51566 6.55582 6.69554 6.90593 7.31113 7.43837 7.57090 7.64771 7.80468 8.54147 9.00963 9.59089 11.09525 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052640 B = 0.002588 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.788103 B =10817.561690 C =11010.829622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.623 5.623 3 C 0.108 3.892 4 C 0.074 3.926 5 H 0.112 0.888 6 O -0.346 6.346 7 C 0.462 3.538 8 O -0.501 6.501 9 C -0.111 4.111 10 C -0.112 4.112 11 C -0.102 4.102 12 C -0.015 4.015 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.172 4.172 22 C 0.524 3.476 23 O -0.525 6.525 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.012 0.988 36 H 0.016 0.984 37 H 0.263 0.737 38 H 0.119 0.881 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.588 -6.847 -1.463 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.360 5.360 3 C -0.015 4.015 4 C 0.018 3.982 5 H 0.129 0.871 6 O -0.263 6.263 7 C 0.305 3.695 8 O -0.387 6.387 9 C -0.149 4.149 10 C -0.150 4.150 11 C -0.140 4.140 12 C -0.053 4.053 13 C -0.559 4.559 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.213 4.213 22 C 0.312 3.688 23 O -0.401 6.401 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.137 0.863 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.705 -7.526 -1.087 27.767 hybrid contribution 0.230 -0.262 0.953 1.014 sum -26.475 -7.788 -0.134 27.597 Atomic orbital electron populations 1.21597 0.77276 1.03430 1.02256 1.48165 1.06847 1.06851 1.74094 1.22060 0.88253 0.87409 1.03825 1.23395 0.86107 0.90101 0.98567 0.87063 1.86603 1.23690 1.68660 1.47324 1.24319 0.82599 0.77452 0.85096 1.90680 1.80798 1.47273 1.19924 1.21616 0.91311 1.00931 1.00994 1.21627 0.93152 1.02268 0.97930 1.21476 0.94470 0.98830 0.99212 1.19575 0.93636 0.96598 0.95463 1.21164 0.96750 1.34812 1.03144 0.91043 1.25051 0.95904 0.94769 0.97901 1.69919 1.04715 1.41666 1.38073 0.86772 0.78313 0.79004 0.85175 1.20312 1.21441 1.18939 1.22814 0.95419 0.96680 1.06347 1.20662 0.88685 0.84411 0.75083 1.90748 1.78343 1.20983 1.50000 0.92232 0.90415 0.90690 0.89015 0.89177 0.87492 0.87509 0.91468 0.91473 0.92529 0.92546 0.97012 0.96582 0.92773 0.86298 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 10.96 59.85 0.66 1.17 16 2 N -0.62 -4.73 3.33 -180.28 -0.60 -5.33 16 3 C 0.11 0.63 7.12 -3.12 -0.02 0.61 16 4 C 0.07 0.60 3.53 -25.10 -0.09 0.51 16 5 H 0.11 0.97 7.13 -51.93 -0.37 0.60 16 6 O -0.35 -3.26 9.99 -39.27 -0.39 -3.65 16 7 C 0.46 5.36 7.96 36.00 0.29 5.65 16 8 O -0.50 -7.30 15.18 -18.75 -0.28 -7.59 16 9 C -0.11 -1.22 5.81 -27.88 -0.16 -1.38 16 10 C -0.11 -1.67 4.50 -26.73 -0.12 -1.79 16 11 C -0.10 -1.87 5.15 -26.73 -0.14 -2.01 16 12 C -0.02 -0.36 4.04 -27.89 -0.11 -0.47 16 13 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 14 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 15 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 17 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 21 C -0.17 -1.49 6.62 -26.74 -0.18 -1.67 16 22 C 0.52 5.42 8.02 -10.86 -0.09 5.33 16 23 O -0.52 -7.44 17.59 5.56 0.10 -7.34 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 0.49 7.93 -51.93 -0.41 0.08 16 26 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.11 0.99 8.14 -51.94 -0.42 0.56 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 32 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.01 0.27 7.58 -51.93 -0.39 -0.12 16 36 H 0.02 0.38 7.19 -51.93 -0.37 0.00 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.12 0.94 8.11 -51.93 -0.42 0.52 16 39 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -34.72 330.80 -6.69 -41.40 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -6.20 Total: -5.20 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.40 Total: -7.33 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.17 Total: -32.47 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.58 Total: -18.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.72 -6.69 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805904114.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.727 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds