Wall clock time and date at job start Mon Mar 30 2020 04:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46762 * 124.35261 * 2 1 4 4 C 1.54477 * 105.47582 * 163.00671 * 3 2 1 5 5 H 1.08996 * 110.96688 * 267.26199 * 4 3 2 6 6 O 1.45196 * 110.97147 * 143.53267 * 4 3 2 7 7 C 1.34234 * 116.99938 * 150.00012 * 6 4 3 8 8 O 1.20822 * 119.99973 * 359.97438 * 7 6 4 9 9 C 1.50696 * 119.99738 * 180.02562 * 7 6 4 10 10 C 1.53004 * 109.46630 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46977 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47274 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99854 * 359.72512 * 15 13 12 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 13 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 13 21 21 C 1.54632 * 101.76536 * 25.41457 * 4 3 2 22 22 C 1.34425 * 124.34512 * 180.02562 * 2 1 3 23 23 O 1.21277 * 124.94080 * 0.41931 * 22 2 1 24 24 H 1.09002 * 109.47561 * 89.99798 * 1 2 3 25 25 H 1.09002 * 109.47247 * 209.99987 * 1 2 3 26 26 H 1.09004 * 109.47322 * 330.00121 * 1 2 3 27 27 H 1.08996 * 110.24619 * 44.00280 * 3 2 1 28 28 H 1.09006 * 110.24538 * 282.00572 * 3 2 1 29 29 H 1.08988 * 109.47520 * 59.99835 * 9 7 6 30 30 H 1.08997 * 109.47026 * 299.98961 * 9 7 6 31 31 H 1.08999 * 109.47785 * 59.99993 * 10 9 7 32 32 H 1.09000 * 109.46944 * 299.99068 * 10 9 7 33 33 H 1.09004 * 109.47166 * 59.99234 * 11 10 9 34 34 H 1.09005 * 109.46988 * 299.99622 * 11 10 9 35 35 H 1.09004 * 109.47330 * 59.99726 * 12 11 10 36 36 H 1.08997 * 109.47279 * 300.00213 * 12 11 10 37 37 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 38 38 H 1.08995 * 110.48353 * 93.88003 * 21 4 3 39 39 H 1.08997 * 110.48590 * 216.52842 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7012 0.7485 0.4351 5 1 3.8276 0.8450 1.5134 6 8 4.7325 1.4844 -0.2742 7 6 5.8968 1.6727 0.3667 8 8 6.0489 1.2376 1.4835 9 6 7.0138 2.4279 -0.3064 10 6 8.2194 2.4993 0.6329 11 6 9.3538 3.2655 -0.0507 12 6 10.5592 3.3375 0.8887 13 6 11.6767 4.0916 0.2152 14 1 11.5408 4.4803 -0.7833 15 6 12.8729 4.2845 0.8732 16 7 13.8479 4.9431 0.2856 17 14 13.1057 3.6176 2.6026 18 1 13.6521 2.2386 2.5319 19 1 14.0524 4.4878 3.3453 20 1 11.7975 3.5963 3.3051 21 6 3.6898 -0.7379 0.0092 22 6 2.2234 -1.1099 -0.0005 23 8 1.7944 -2.2442 -0.0083 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.8987 1.9381 0.7104 28 1 2.3304 1.6431 -1.0003 29 1 6.6781 3.4371 -0.5447 30 1 7.2987 1.9135 -1.2241 31 1 8.5551 1.4900 0.8708 32 1 7.9349 3.0135 1.5509 33 1 9.0184 4.2750 -0.2890 34 1 9.6383 2.7510 -0.9686 35 1 10.8947 2.3282 1.1274 36 1 10.2745 3.8522 1.8064 37 1 14.6896 5.0784 0.7484 38 1 4.1191 -0.8529 -0.9860 39 1 4.2328 -1.3462 0.7326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805904114.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:12 Heat of formation + Delta-G solvation = -156.491329 kcal Electronic energy + Delta-G solvation = -19761.316151 eV Core-core repulsion = 16474.681925 eV Total energy + Delta-G solvation = -3286.634226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.02806 -41.01632 -38.22785 -37.04295 -36.60236 -34.63025 -33.32173 -31.93617 -28.85137 -28.08155 -27.29045 -24.53558 -22.89448 -21.86498 -21.48217 -20.80077 -19.00201 -18.75900 -18.08976 -17.48113 -17.25294 -16.96781 -16.38229 -16.18145 -16.05392 -14.94529 -14.82846 -14.76365 -14.59159 -14.29742 -14.09222 -13.72356 -13.53572 -13.41870 -13.35750 -13.19230 -12.85120 -12.36697 -12.27515 -12.09172 -11.94548 -11.74274 -11.65278 -11.35934 -11.28559 -11.21489 -11.05922 -10.74017 -9.88279 -8.27585 -6.30591 1.16215 1.33420 1.36902 1.38334 1.39877 1.50584 1.97497 2.37601 3.08091 3.14772 3.22130 3.44359 3.80150 3.90827 4.05555 4.14649 4.32391 4.36215 4.42100 4.49139 4.61303 4.64714 4.66173 4.73092 4.79729 4.84973 4.85768 5.13906 5.20505 5.25060 5.35596 5.41660 5.63369 5.68297 5.71109 5.86588 6.31832 6.70849 6.78241 6.91794 7.34223 8.88942 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052640 B = 0.002588 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.788103 B =10817.561690 C =11010.829622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.618 5.618 3 C 0.113 3.887 4 C 0.073 3.927 5 H 0.106 0.894 6 O -0.335 6.335 7 C 0.469 3.531 8 O -0.535 6.535 9 C -0.105 4.105 10 C -0.103 4.103 11 C -0.095 4.095 12 C -0.018 4.018 13 C -0.529 4.529 14 H 0.037 0.963 15 C 0.001 3.999 16 N -0.952 5.952 17 Si 0.948 3.052 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.249 1.249 21 C -0.170 4.170 22 C 0.516 3.484 23 O -0.574 6.574 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.265 0.735 38 H 0.126 0.874 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.400 -6.564 -0.993 29.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.352 5.352 3 C -0.010 4.010 4 C 0.017 3.983 5 H 0.124 0.876 6 O -0.251 6.251 7 C 0.314 3.686 8 O -0.424 6.424 9 C -0.142 4.142 10 C -0.141 4.141 11 C -0.132 4.132 12 C -0.055 4.055 13 C -0.567 4.567 14 H 0.055 0.945 15 C -0.195 4.195 16 N -0.593 5.593 17 Si 0.772 3.228 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.172 1.172 21 C -0.210 4.210 22 C 0.305 3.695 23 O -0.454 6.454 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.144 0.856 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -28.555 -7.204 -0.637 29.457 hybrid contribution 0.760 -0.290 0.711 1.080 sum -27.796 -7.494 0.074 28.788 Atomic orbital electron populations 1.21801 0.75893 1.04270 1.03148 1.48326 1.07871 1.06659 1.72380 1.22218 0.86385 0.86846 1.05505 1.23493 0.86928 0.89622 0.98243 0.87617 1.86584 1.23245 1.68391 1.46906 1.24317 0.83090 0.76712 0.84461 1.90682 1.81460 1.48800 1.21437 1.21517 0.89636 1.02683 1.00406 1.21404 0.93573 1.00916 0.98215 1.21330 0.93694 0.99860 0.98355 1.19585 0.94157 0.95630 0.96175 1.21567 0.98428 1.34669 1.02085 0.94472 1.26024 0.95672 0.95222 1.02607 1.70068 1.05484 1.43540 1.40185 0.85685 0.78949 0.78498 0.79677 1.19373 1.21039 1.17218 1.22777 0.94506 0.97135 1.06612 1.20913 0.89563 0.84340 0.74721 1.90716 1.79184 1.22901 1.52589 0.91323 0.91791 0.87663 0.86294 0.87580 0.85069 0.85435 0.92323 0.92127 0.92106 0.92283 0.96800 0.96541 0.92601 0.85563 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.96 127.77 1.40 2.17 16 2 N -0.62 -8.14 3.33 -842.89 -2.81 -10.95 16 3 C 0.11 0.95 7.12 86.83 0.62 1.57 16 4 C 0.07 1.02 3.53 31.65 0.11 1.13 16 5 H 0.11 1.66 7.13 -2.39 -0.02 1.65 16 6 O -0.34 -5.33 9.99 -51.46 -0.51 -5.85 16 7 C 0.47 9.71 7.96 71.23 0.57 10.27 16 8 O -0.54 -14.75 15.18 21.98 0.33 -14.42 16 9 C -0.11 -1.98 5.81 29.85 0.17 -1.81 16 10 C -0.10 -2.86 4.50 30.60 0.14 -2.72 16 11 C -0.09 -3.31 5.15 30.59 0.16 -3.16 16 12 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 13 C -0.53 -30.27 9.66 25.60 0.25 -30.03 16 14 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 15 C 0.00 0.07 5.47 84.66 0.46 0.53 16 16 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 17 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 21 C -0.17 -2.78 6.62 30.59 0.20 -2.57 16 22 C 0.52 10.40 8.02 87.90 0.71 11.10 16 23 O -0.57 -16.63 17.59 -3.02 -0.05 -16.69 16 24 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.76 7.93 -2.39 -0.02 0.74 16 26 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 27 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.11 0.65 8.10 -2.38 -0.02 0.63 16 29 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.01 0.62 7.58 -2.38 -0.02 0.60 16 36 H 0.02 0.75 7.19 -2.39 -0.02 0.73 16 37 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.13 1.84 8.11 -2.39 -0.02 1.82 16 39 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -76.79 330.80 5.01 -71.78 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 0.97 Total: 3.19 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 4.90 Total: -14.21 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -2.51 Total: -70.47 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.23 Total: -36.95 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -76.79 5.01 -71.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805904114.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.709 kcal (2) G-P(sol) polarization free energy of solvation -76.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds